ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl19a07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF474982.1| Hordeum vulgare clone BAC 011009, complete sequence 729 0.0
2dbj|AB244279.1| Oryza sativa (japonica cultivar-group) OML4 mRNA... 56 1e-04
3dbj|AK121247.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 1e-04
4dbj|AP007253.2| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
5ref|XM_467506.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.40
6gb|AY579887.1| Citrus unshiu AML1 mRNA, complete cds 44 0.40
7emb|BX927275.8| Zebrafish DNA sequence from clone DKEY-108P14 in... 44 0.40
8dbj|AB244277.1| Oryza sativa (japonica cultivar-group) OML2 mRNA... 44 0.40
9dbj|AK121396.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.40
10dbj|AK111503.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.40
11ref|XM_756495.1| Ustilago maydis 521 hypothetical protein (UM054... 42 1.6
12gb|AC025656.7| Homo sapiens chromosome 18, clone RP11-36L19, com... 42 1.6
13gb|AC009709.7|AC009709 Homo sapiens chromosome 18, clone RP11-31... 42 1.6
14gb|AC007911.8|AC007911 Homo sapiens chromosome 18, clone RP11-52... 42 1.6
15ref|NM_125589.2| Arabidopsis thaliana AML1; RNA binding / nuclei... 40 6.2
16ref|NM_001037045.1| Arabidopsis thaliana AML1; RNA binding / nuc... 40 6.2
17gb|AC135190.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.2
18gb|AC136998.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.2
19gb|AC146817.10| Medicago truncatula clone mth2-8c19, complete se... 40 6.2
20gb|AC166997.1| Mus musculus BAC clone RP23-107H9 from chromosome... 40 6.2
21emb|AL035684.25|HS1114A1 Human DNA sequence from clone RP5-1114A... 40 6.2
22gb|BT008806.1| Arabidopsis thaliana At5g61960 gene, complete cds 40 6.2
23gb|AC008114.25| Homo sapiens 12 BAC RP11-502N13 (Roswell Park Ca... 40 6.2
24gb|AC092994.4| Homo sapiens 3 BAC RP11-656A15 (Roswell Park Canc... 40 6.2
25dbj|AK125103.1| Homo sapiens cDNA FLJ43113 fis, clone CTONG2028208 40 6.2
26gb|AC004821.3| Homo sapiens chromosome 5 clone RP1-98O22, comple... 40 6.2
27gb|AC026397.4| Homo sapiens chromosome 16 clone CTA-162C2, compl... 40 6.2
28gb|AY062536.1| Arabidopsis thaliana Mei2-like protein (K22G18.9)... 40 6.2
29dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
30gb|AC044802.6| Homo sapiens chromosome 16 clone RP11-61A14, comp... 40 6.2
31gb|AC146083.5| Pan troglodytes BAC clone RP43-56I21 from chromos... 40 6.2
32gb|AC004803.11| Homo sapiens 12 BAC RP11-359B12 (Roswell Park Ca... 40 6.2
33gb|AC113403.4| Homo sapiens chromosome 5 clone RP11-461O14, comp... 40 6.2
34gb|AC145965.4| Pan troglodytes BAC clone clone RP43-12H8 from 7,... 40 6.2
35dbj|D86122.1| Arabidopsis thaliana mRNA for Mei2-like protein, c... 40 6.2
36gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.2
37emb|AL929066.7| Mouse DNA sequence from clone RP23-68E1 on chrom... 40 6.2
38gb|AC004638.1|HUAC004638 Homo sapiens Chromosome 16 BAC clone CI... 40 6.2 
>gb|AF474982.1| Hordeum vulgare clone BAC 011009, complete sequence
          Length = 77136

 Score =  729 bits (368), Expect = 0.0
 Identities = 368/368 (100%)
 Strand = Plus / Plus

                                                                         
Query: 1     aaccagctgaaaaggaactcaaccatgcagatgatgagccttttgaactaactcaggaaa 60
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52881 aaccagctgaaaaggaactcaaccatgcagatgatgagccttttgaactaactcaggaaa 52940

                                                                         
Query: 61    ttgaggcacaagtgattggcaatctcctccctgatgacgacgacttattgtcaggtgttc 120
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52941 ttgaggcacaagtgattggcaatctcctccctgatgacgacgacttattgtcaggtgttc 53000

                                                                         
Query: 121   tttataatgtgggtcaccctgcccgtgctaataacatagatgacattgatgacgacatat 180
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53001 tttataatgtgggtcaccctgcccgtgctaataacatagatgacattgatgacgacatat 53060

                                                                         
Query: 181   tctctactggaggtggaatggaattggaagctgatgaaaataacaagttgctaaaacata 240
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53061 tctctactggaggtggaatggaattggaagctgatgaaaataacaagttgctaaaacata 53120

                                                                         
Query: 241   acggtggagccaacactggtcagactgggttaaatggcctaccgtatggcgaaaacccct 300
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53121 acggtggagccaacactggtcagactgggttaaatggcctaccgtatggcgaaaacccct 53180

                                                                         
Query: 301   cgagaacccttttcatcagaaacattaatgccaatgttgaggatactgaattgaaactcc 360
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53181 cgagaacccttttcatcagaaacattaatgccaatgttgaggatactgaattgaaactcc 53240

                     
Query: 361   tatttgag 368
             ||||||||
Sbjct: 53241 tatttgag 53248



 Score =  145 bits (73), Expect = 1e-31
 Identities = 90/95 (94%), Gaps = 3/95 (3%)
 Strand = Plus / Plus

                                                                         
Query: 367   agcaatatggagacatccaaacactttacactgcctacaaacatcacggtttagtgataa 426
             |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 53328 agcaatatggagacatccaaacactttacactgcctacaaacatcatggtttagtgataa 53387

                                                
Query: 427   tatcatggtactatgatataagatccgcagaacgt 461
             ||||    |||||||||||||||||||||||||||
Sbjct: 53388 tatc---ttactatgatataagatccgcagaacgt 53419
to top
>dbj|AB244279.1| Oryza sativa (japonica cultivar-group) OML4 mRNA for MEI2-like RNA
           binding protein, complete cds
          Length = 3006

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 105/130 (80%), Gaps = 3/130 (2%)
 Strand = Plus / Plus

                                                                       
Query: 319 gaaacattaatgccaatgttgaggatactgaattgaaactcctatttgagcaatatggag 378
           |||||||||||   |||||||||||  |||||||||| |||||||||||||| |  ||||
Sbjct: 839 gaaacattaatagtaatgttgaggactctgaattgaagctcctatttgagcatttcggag 898

                                                                       
Query: 379 acatccaaacactttacactgcctacaaacatcacggtttagtgataatatcatggtact 438
           | ||||   | ||||| |||||||  |||||||  ||||| ||||| ||||| |   |||
Sbjct: 899 atatccgtgccctttatactgcctgtaaacatcgtggttttgtgatgatatctt---act 955

                     
Query: 439 atgatataag 448
           ||||||||||
Sbjct: 956 atgatataag 965



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 80/99 (80%)
 Strand = Plus / Plus

                                                                       
Query: 21  aaccatgcagatgatgagccttttgaactaactcaggaaattgaggcacaagtgattggc 80
           |||||||  ||||||||||| |||||  | ||  ||||||||||||| ||| | ||||| 
Sbjct: 526 aaccatgttgatgatgagccctttgagttgaccgaggaaattgaggcccaaataattgga 585

                                                  
Query: 81  aatctcctccctgatgacgacgacttattgtcaggtgtt 119
           ||||| || |||||||| || ||| | || |||||||||
Sbjct: 586 aatcttcttcctgatgatgatgacctgttatcaggtgtt 624



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 48/57 (84%)
 Strand = Plus / Plus

                                                                    
Query: 167 tgatgacgacatattctctactggaggtggaatggaattggaagctgatgaaaataa 223
           |||||| || |||||||  |||||||| || |||||| | ||| |||||||||||||
Sbjct: 672 tgatgatgatatattctacactggaggcgggatggaactcgaaactgatgaaaataa 728
to top
>dbj|AK121247.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023099P19, full
            insert sequence
          Length = 3975

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 105/130 (80%), Gaps = 3/130 (2%)
 Strand = Plus / Plus

                                                                        
Query: 319  gaaacattaatgccaatgttgaggatactgaattgaaactcctatttgagcaatatggag 378
            |||||||||||   |||||||||||  |||||||||| |||||||||||||| |  ||||
Sbjct: 1175 gaaacattaatagtaatgttgaggactctgaattgaagctcctatttgagcatttcggag 1234

                                                                        
Query: 379  acatccaaacactttacactgcctacaaacatcacggtttagtgataatatcatggtact 438
            | ||||   | ||||| |||||||  |||||||  ||||| ||||| ||||| |   |||
Sbjct: 1235 atatccgtgccctttatactgcctgtaaacatcgtggttttgtgatgatatctt---act 1291

                      
Query: 439  atgatataag 448
            ||||||||||
Sbjct: 1292 atgatataag 1301



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 80/99 (80%)
 Strand = Plus / Plus

                                                                       
Query: 21  aaccatgcagatgatgagccttttgaactaactcaggaaattgaggcacaagtgattggc 80
           |||||||  ||||||||||| |||||  | ||  ||||||||||||| ||| | ||||| 
Sbjct: 862 aaccatgttgatgatgagccctttgagttgaccgaggaaattgaggcccaaataattgga 921

                                                  
Query: 81  aatctcctccctgatgacgacgacttattgtcaggtgtt 119
           ||||| || |||||||| || ||| | || |||||||||
Sbjct: 922 aatcttcttcctgatgatgatgacctgttatcaggtgtt 960



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 48/57 (84%)
 Strand = Plus / Plus

                                                                     
Query: 167  tgatgacgacatattctctactggaggtggaatggaattggaagctgatgaaaataa 223
            |||||| || |||||||  |||||||| || |||||| | ||| |||||||||||||
Sbjct: 1008 tgatgatgatatattctacactggaggcgggatggaactcgaaactgatgaaaataa 1064
to top
>dbj|AP007253.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0004O05
          Length = 140513

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                                
Query: 319    gaaacattaatgccaatgttgaggatactgaattgaaactcctatttgag 368
              |||||||||||   |||||||||||  |||||||||| ||||||||||||
Sbjct: 118124 gaaacattaatagtaatgttgaggactctgaattgaagctcctatttgag 118173



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 80/99 (80%)
 Strand = Plus / Plus

                                                                          
Query: 21     aaccatgcagatgatgagccttttgaactaactcaggaaattgaggcacaagtgattggc 80
              |||||||  ||||||||||| |||||  | ||  ||||||||||||| ||| | ||||| 
Sbjct: 117811 aaccatgttgatgatgagccctttgagttgaccgaggaaattgaggcccaaataattgga 117870

                                                     
Query: 81     aatctcctccctgatgacgacgacttattgtcaggtgtt 119
              ||||| || |||||||| || ||| | || |||||||||
Sbjct: 117871 aatcttcttcctgatgatgatgacctgttatcaggtgtt 117909



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 48/57 (84%)
 Strand = Plus / Plus

                                                                       
Query: 167    tgatgacgacatattctctactggaggtggaatggaattggaagctgatgaaaataa 223
              |||||| || |||||||  |||||||| || |||||| | ||| |||||||||||||
Sbjct: 117957 tgatgatgatatattctacactggaggcgggatggaactcgaaactgatgaaaataa 118013
to top
>ref|XM_467506.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3094

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                 
Query: 363 tttgagcaatatggagacatccaaacactttacactgc 400
           |||||||||||||| || |||| ||||||||| |||||
Sbjct: 831 tttgagcaatatggggatatccgaacactttatactgc 868
to top
>gb|AY579887.1| Citrus unshiu AML1 mRNA, complete cds
          Length = 3183

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                 
Query: 363 tttgagcaatatggagacatccaaacactttacactgc 400
           |||||||||||||||||||||  ||| || ||||||||
Sbjct: 743 tttgagcaatatggagacatcagaactctgtacactgc 780
to top
>emb|BX927275.8| Zebrafish DNA sequence from clone DKEY-108P14 in linkage group 23,
             complete sequence
          Length = 133912

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 148   ctaataacatagatgacattgatgac 173
             ||||||||||||||||||| ||||||
Sbjct: 64133 ctaataacatagatgacatagatgac 64108
to top
>dbj|AB244277.1| Oryza sativa (japonica cultivar-group) OML2 mRNA for MEI2-like RNA
           binding protein, complete cds
          Length = 2547

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                 
Query: 363 tttgagcaatatggagacatccaaacactttacactgc 400
           |||||||||||||| || |||| ||||||||| |||||
Sbjct: 649 tttgagcaatatggggatatccgaacactttatactgc 686
to top
>dbj|AK121396.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023131E09, full
           insert sequence
          Length = 3234

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                 
Query: 363 tttgagcaatatggagacatccaaacactttacactgc 400
           |||||||||||||| || |||| ||||||||| |||||
Sbjct: 883 tttgagcaatatggggatatccgaacactttatactgc 920
to top
>dbj|AK111503.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000P21, full
           insert sequence
          Length = 3094

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                 
Query: 363 tttgagcaatatggagacatccaaacactttacactgc 400
           |||||||||||||| || |||| ||||||||| |||||
Sbjct: 831 tttgagcaatatggggatatccgaacactttatactgc 868
to top
>ref|XM_756495.1| Ustilago maydis 521 hypothetical protein (UM05441.1) partial mRNA
          Length = 1230

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 328  atgccaatgttgaggatactg 348
            |||||||||||||||||||||
Sbjct: 1004 atgccaatgttgaggatactg 984
to top
>gb|AC025656.7| Homo sapiens chromosome 18, clone RP11-36L19, complete sequence
          Length = 193351

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 307    cccttttcatcagaaacattaatgccaat 335
              |||||||||||||||| ||||| ||||||
Sbjct: 192960 cccttttcatcagaaagattaaagccaat 192932
to top
>gb|AC009709.7|AC009709 Homo sapiens chromosome 18, clone RP11-319O9, complete sequence
          Length = 187615

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 307   cccttttcatcagaaacattaatgccaat 335
             |||||||||||||||| ||||| ||||||
Sbjct: 22696 cccttttcatcagaaagattaaagccaat 22668
to top
>gb|AC007911.8|AC007911 Homo sapiens chromosome 18, clone RP11-520K18, complete sequence
          Length = 160299

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 307   cccttttcatcagaaacattaatgccaat 335
             |||||||||||||||| ||||| ||||||
Sbjct: 16403 cccttttcatcagaaagattaaagccaat 16375
to top
>ref|NM_125589.2| Arabidopsis thaliana AML1; RNA binding / nucleic acid binding
            AT5G61960 (AML1) transcript variant AT5G61960.1 mRNA,
            complete cds
          Length = 3817

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 358  tcctatttgagcaatatggagacatcca 385
            |||| |||||||||| ||||||||||||
Sbjct: 1293 tcctttttgagcaatttggagacatcca 1320
to top
>ref|NM_001037045.1| Arabidopsis thaliana AML1; RNA binding / nucleic acid binding
           AT5G61960 (AML1) transcript variant AT5G61960.2 mRNA,
           complete cds
          Length = 3410

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 358 tcctatttgagcaatatggagacatcca 385
           |||| |||||||||| ||||||||||||
Sbjct: 885 tcctttttgagcaatttggagacatcca 912
to top
>gb|AC135190.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0064H09, complete sequence
          Length = 146742

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 39    ccttttgaactaactcagga 58
             ||||||||||||||||||||
Sbjct: 15283 ccttttgaactaactcagga 15264
to top
>gb|AC136998.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
              OSJNBa0082P17, complete sequence
          Length = 157539

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 39     ccttttgaactaactcagga 58
              ||||||||||||||||||||
Sbjct: 122901 ccttttgaactaactcagga 122882
to top
>gb|AC146817.10| Medicago truncatula clone mth2-8c19, complete sequence
          Length = 114343

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 163  acattgatgacgacatattctcta 186
            |||||||| |||||||||||||||
Sbjct: 5099 acattgattacgacatattctcta 5122
to top
>gb|AC166997.1| Mus musculus BAC clone RP23-107H9 from chromosome 14, complete sequence
          Length = 201316

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 253    acactggtcagactgggtta 272
              ||||||||||||||||||||
Sbjct: 140095 acactggtcagactgggtta 140114
to top
>emb|AL035684.25|HS1114A1 Human DNA sequence from clone RP5-1114A1 on chromosome 20q13.11-13.2
              Contains the 3' part of the ATP9A gene for ATPase, class
              II, type 9A (KIAA0611), the 5' end of the NFATC2 gene for
              cytoplasmic calcineurin-dependent (2) nuclear factor of
              activated T-cells  gene and two CpG islands, complete
              sequence
          Length = 148845

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 56     ggaaattgaggcacaagtga 75
              ||||||||||||||||||||
Sbjct: 115672 ggaaattgaggcacaagtga 115653
to top
>gb|BT008806.1| Arabidopsis thaliana At5g61960 gene, complete cds
          Length = 2748

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 358 tcctatttgagcaatatggagacatcca 385
           |||| |||||||||| ||||||||||||
Sbjct: 704 tcctttttgagcaatttggagacatcca 731
to top
>gb|AC008114.25| Homo sapiens 12 BAC RP11-502N13 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 126503

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 334   atgttgaggatactgaattg 353
             ||||||||||||||||||||
Sbjct: 24393 atgttgaggatactgaattg 24374
to top
>gb|AC092994.4| Homo sapiens 3 BAC RP11-656A15 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 159445

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 118   ttctttataatgtgggtcac 137
             ||||||||||||||||||||
Sbjct: 80459 ttctttataatgtgggtcac 80478
to top
>dbj|AK125103.1| Homo sapiens cDNA FLJ43113 fis, clone CTONG2028208
          Length = 2466

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 334  atgttgaggatactgaattg 353
            ||||||||||||||||||||
Sbjct: 1632 atgttgaggatactgaattg 1613
to top
>gb|AC004821.3| Homo sapiens chromosome 5 clone RP1-98O22, complete sequence
          Length = 163332

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 348   gaattgaaactcctatttga 367
             ||||||||||||||||||||
Sbjct: 94354 gaattgaaactcctatttga 94335
to top
>gb|AC026397.4| Homo sapiens chromosome 16 clone CTA-162C2, complete sequence
          Length = 124998

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 52    ctcaggaaattgaggcacaa 71
             ||||||||||||||||||||
Sbjct: 18998 ctcaggaaattgaggcacaa 19017
to top
>gb|AY062536.1| Arabidopsis thaliana Mei2-like protein (K22G18.9) mRNA, complete
           cds
          Length = 3327

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 358 tcctatttgagcaatatggagacatcca 385
           |||| |||||||||| ||||||||||||
Sbjct: 904 tcctttttgagcaatttggagacatcca 931
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 39       ccttttgaactaactcagga 58
                ||||||||||||||||||||
Sbjct: 26712825 ccttttgaactaactcagga 26712806
to top
>gb|AC044802.6| Homo sapiens chromosome 16 clone RP11-61A14, complete sequence
          Length = 170691

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 52    ctcaggaaattgaggcacaa 71
             ||||||||||||||||||||
Sbjct: 44867 ctcaggaaattgaggcacaa 44886
to top
>gb|AC146083.5| Pan troglodytes BAC clone RP43-56I21 from chromosome 7, complete sequence
          Length = 177922

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 307    cccttttcatcagaaacattaatg 330
              |||||||||||| |||||||||||
Sbjct: 127182 cccttttcatcataaacattaatg 127159
to top
>gb|AC004803.11| Homo sapiens 12 BAC RP11-359B12 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 154369

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 311    tttcatcagaaacattaatg 330
              ||||||||||||||||||||
Sbjct: 115025 tttcatcagaaacattaatg 115044
to top
>gb|AC113403.4| Homo sapiens chromosome 5 clone RP11-461O14, complete sequence
          Length = 167159

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 348   gaattgaaactcctatttga 367
             ||||||||||||||||||||
Sbjct: 16966 gaattgaaactcctatttga 16985
to top
>gb|AC145965.4| Pan troglodytes BAC clone clone RP43-12H8 from 7, complete sequence
          Length = 201762

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 307    cccttttcatcagaaacattaatg 330
              |||||||||||| |||||||||||
Sbjct: 189293 cccttttcatcataaacattaatg 189316
to top
>dbj|D86122.1| Arabidopsis thaliana mRNA for Mei2-like protein, complete cds
          Length = 3587

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 358  tcctatttgagcaatatggagacatcca 385
            |||| |||||||||| ||||||||||||
Sbjct: 1062 tcctttttgagcaatttggagacatcca 1089
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 39       ccttttgaactaactcagga 58
                ||||||||||||||||||||
Sbjct: 27037888 ccttttgaactaactcagga 27037869
to top
>emb|AL929066.7| Mouse DNA sequence from clone RP23-68E1 on chromosome 2, complete
              sequence
          Length = 210907

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 311    tttcatcagaaacattaatg 330
              ||||||||||||||||||||
Sbjct: 167205 tttcatcagaaacattaatg 167186
to top
>gb|AC004638.1|HUAC004638 Homo sapiens Chromosome 16 BAC clone CIT987SK-A-116A10, complete
             sequence
          Length = 124645

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 52    ctcaggaaattgaggcacaa 71
             ||||||||||||||||||||
Sbjct: 18998 ctcaggaaattgaggcacaa 19017


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,095,415
Number of Sequences: 3902068
Number of extensions: 4095415
Number of successful extensions: 83932
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 83841
Number of HSP's gapped (non-prelim): 87
length of query: 461
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 439
effective length of database: 17,147,199,772
effective search space: 7527620699908
effective search space used: 7527620699908
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top