ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bastl19a06 |
|---|---|
| Clone Library Name | barley_pub |
>COPB2_MOUSE (O55029) Coatomer subunit beta' (Beta'-coat protein) (Beta'-COP)| (p102) Length = 905 Score = 110 bits (275), Expect = 8e-25 Identities = 48/68 (70%), Positives = 62/68 (91%) Frame = +2 Query: 200 MPLRLEIKRKFAQRSERVKSVDLHPTEPWILASLYSGTLCIWDYQTQTMVKSFEVSELPV 379 MPLRL+IKRK RS+RVKSVDLHPTEPW+LASLY+G++C+W+++TQT+VK+FEV +LPV Sbjct: 1 MPLRLDIKRKLTARSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQTLVKTFEVCDLPV 60 Query: 380 RSAKFCVR 403 R+AKF R Sbjct: 61 RAAKFVAR 68 Score = 31.6 bits (70), Expect = 0.47 Identities = 13/40 (32%), Positives = 23/40 (57%) Frame = +2 Query: 212 LEIKRKFAQRSERVKSVDLHPTEPWILASLYSGTLCIWDY 331 LE F S+ ++ + +HPT+P+IL S + +WD+ Sbjct: 89 LERVHMFEAHSDYIRCIAVHPTQPFILTSSDDMLIKLWDW 128
>COPB2_HUMAN (P35606) Coatomer subunit beta' (Beta'-coat protein) (Beta'-COP)| (p102) Length = 905 Score = 108 bits (270), Expect = 3e-24 Identities = 47/67 (70%), Positives = 61/67 (91%) Frame = +2 Query: 203 PLRLEIKRKFAQRSERVKSVDLHPTEPWILASLYSGTLCIWDYQTQTMVKSFEVSELPVR 382 PLRL+IKRK RS+RVKSVDLHPTEPW+LASLY+G++C+W+++TQT+VK+FEV +LPVR Sbjct: 1 PLRLDIKRKLTARSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQTLVKTFEVCDLPVR 60 Query: 383 SAKFCVR 403 +AKF R Sbjct: 61 AAKFVAR 67 Score = 31.6 bits (70), Expect = 0.47 Identities = 13/40 (32%), Positives = 23/40 (57%) Frame = +2 Query: 212 LEIKRKFAQRSERVKSVDLHPTEPWILASLYSGTLCIWDY 331 LE F S+ ++ + +HPT+P+IL S + +WD+ Sbjct: 88 LERVHMFEAHSDYIRCIAVHPTQPFILTSSDDMLIKLWDW 127
>COPB2_BOVIN (P35605) Coatomer subunit beta' (Beta'-coat protein) (Beta'-COP)| (p102) Length = 905 Score = 108 bits (270), Expect = 3e-24 Identities = 47/67 (70%), Positives = 61/67 (91%) Frame = +2 Query: 203 PLRLEIKRKFAQRSERVKSVDLHPTEPWILASLYSGTLCIWDYQTQTMVKSFEVSELPVR 382 PLRL+IKRK RS+RVKSVDLHPTEPW+LASLY+G++C+W+++TQT+VK+FEV +LPVR Sbjct: 1 PLRLDIKRKLTARSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQTLVKTFEVCDLPVR 60 Query: 383 SAKFCVR 403 +AKF R Sbjct: 61 AAKFVAR 67 Score = 31.6 bits (70), Expect = 0.47 Identities = 13/40 (32%), Positives = 23/40 (57%) Frame = +2 Query: 212 LEIKRKFAQRSERVKSVDLHPTEPWILASLYSGTLCIWDY 331 LE F S+ ++ + +HPT+P+IL S + +WD+ Sbjct: 88 LERVHMFEAHSDYIRCIAVHPTQPFILTSSDDMLIKLWDW 127
>COPB2_RAT (O35142) Coatomer subunit beta' (Beta'-coat protein) (Beta'-COP)| (p102) Length = 904 Score = 106 bits (264), Expect = 2e-23 Identities = 46/67 (68%), Positives = 60/67 (89%) Frame = +2 Query: 203 PLRLEIKRKFAQRSERVKSVDLHPTEPWILASLYSGTLCIWDYQTQTMVKSFEVSELPVR 382 PLRL+IKRK S+RVKSVDLHPTEPW+LASLY+G++C+W+++TQT+VK+FEV +LPVR Sbjct: 1 PLRLDIKRKLTAMSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQTLVKTFEVCDLPVR 60 Query: 383 SAKFCVR 403 +AKF R Sbjct: 61 AAKFVAR 67 Score = 31.6 bits (70), Expect = 0.47 Identities = 13/40 (32%), Positives = 23/40 (57%) Frame = +2 Query: 212 LEIKRKFAQRSERVKSVDLHPTEPWILASLYSGTLCIWDY 331 LE F S+ ++ + +HPT+P+IL S + +WD+ Sbjct: 88 LERVHMFEAHSDYIRCIAVHPTQPFILTSSDDMLIKLWDW 127
>COPB2_CAEEL (Q20168) Probable coatomer subunit beta' (Beta'-coat protein)| (Beta'-COP) Length = 1000 Score = 98.6 bits (244), Expect = 3e-21 Identities = 44/68 (64%), Positives = 57/68 (83%) Frame = +2 Query: 200 MPLRLEIKRKFAQRSERVKSVDLHPTEPWILASLYSGTLCIWDYQTQTMVKSFEVSELPV 379 MPLRL++KRK RS+RVK VDLHP E W+LA+LY+G + IW+Y+TQT+VKSFEV ++PV Sbjct: 1 MPLRLDVKRKLLARSDRVKCVDLHPVETWLLAALYNGNVHIWNYETQTLVKSFEVCDVPV 60 Query: 380 RSAKFCVR 403 R+AKF R Sbjct: 61 RAAKFVPR 68 Score = 32.3 bits (72), Expect = 0.28 Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 1/51 (1%) Frame = +2 Query: 212 LEIKRKFAQRSERVKSVDLHPTEPWILASLYSGTLCIWDYQTQ-TMVKSFE 361 LE +F S+ ++S+ +HPT P++++S + +WD+ + M +SFE Sbjct: 89 LERVHQFEAHSDYLRSLVVHPTLPYVISSSDDMLVKMWDWDNKWAMKQSFE 139
>COPB2_DROME (O62621) Coatomer subunit beta' (Beta'-coat protein) (Beta'-COP)| Length = 914 Score = 89.4 bits (220), Expect = 2e-18 Identities = 40/68 (58%), Positives = 53/68 (77%) Frame = +2 Query: 200 MPLRLEIKRKFAQRSERVKSVDLHPTEPWILASLYSGTLCIWDYQTQTMVKSFEVSELPV 379 MPL+L+IKR+ RS+RVK VDLHP EPW+L +LY+G + I +Y+ Q MVK FEV ++PV Sbjct: 1 MPLKLDIKRRLTSRSDRVKCVDLHPAEPWMLCALYNGHVHIMNYENQQMVKDFEVCDVPV 60 Query: 380 RSAKFCVR 403 RSA+F R Sbjct: 61 RSARFVAR 68 Score = 28.5 bits (62), Expect = 4.0 Identities = 11/41 (26%), Positives = 23/41 (56%) Frame = +2 Query: 212 LEIKRKFAQRSERVKSVDLHPTEPWILASLYSGTLCIWDYQ 334 LE F S+ ++ + +HPT+P +L S + +W+++ Sbjct: 89 LEKVHSFEAHSDYLRCIAVHPTQPLVLTSSDDMLIKLWNWE 129
>COPB2_YEAST (P41811) Coatomer subunit beta' (Beta'-coat protein) (Beta'-COP)| Length = 889 Score = 86.7 bits (213), Expect = 1e-17 Identities = 35/66 (53%), Positives = 52/66 (78%) Frame = +2 Query: 206 LRLEIKRKFAQRSERVKSVDLHPTEPWILASLYSGTLCIWDYQTQTMVKSFEVSELPVRS 385 ++L+IK+ F+ RS+RVK +D HPTEPW+L +LYSG + +W+Y+TQ V+S +V+E PVR+ Sbjct: 1 MKLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRA 60 Query: 386 AKFCVR 403 KF R Sbjct: 61 GKFIAR 66 Score = 30.0 bits (66), Expect = 1.4 Identities = 12/48 (25%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Frame = +2 Query: 230 FAQRSERVKSVDLHPTEPWILASLYSGTLCIWDYQTQ-TMVKSFEVSE 370 F + ++S+ +HPT+P++L+ T+ +W+++ + ++FE E Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHE 140 Score = 28.9 bits (63), Expect = 3.1 Identities = 11/30 (36%), Positives = 20/30 (66%) Frame = +2 Query: 272 PTEPWILASLYSGTLCIWDYQTQTMVKSFE 361 P +P+++ + T+ IWDYQT++ V + E Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLE 225 Score = 28.5 bits (62), Expect = 4.0 Identities = 13/32 (40%), Positives = 18/32 (56%) Frame = +2 Query: 269 HPTEPWILASLYSGTLCIWDYQTQTMVKSFEV 364 HPT P I++ GTL IW+ T + K+ V Sbjct: 237 HPTLPIIISGSEDGTLKIWNSSTYKVEKTLNV 268
>COPB2_SCHPO (O42937) Probable coatomer subunit beta' (Beta'-coat protein)| (Beta'-COP) Length = 796 Score = 84.7 bits (208), Expect = 5e-17 Identities = 33/66 (50%), Positives = 52/66 (78%) Frame = +2 Query: 206 LRLEIKRKFAQRSERVKSVDLHPTEPWILASLYSGTLCIWDYQTQTMVKSFEVSELPVRS 385 +RL+ +RK +ERVK+VD HPTEPW++AS Y+G + IW+Y TQT+V+SF+++++P+R+ Sbjct: 2 MRLDFQRKLLSHTERVKAVDFHPTEPWVIASHYNGQVGIWNYNTQTLVRSFDINDVPIRA 61 Query: 386 AKFCVR 403 F R Sbjct: 62 CAFIAR 67
>COPA_YEAST (P53622) Coatomer subunit alpha (Alpha-coat protein) (Alpha-COP)| Length = 1201 Score = 59.3 bits (142), Expect = 2e-09 Identities = 24/61 (39%), Positives = 38/61 (62%) Frame = +2 Query: 212 LEIKRKFAQRSERVKSVDLHPTEPWILASLYSGTLCIWDYQTQTMVKSFEVSELPVRSAK 391 +++ KF +S R K + HP+ PW+L +L+S T+ +WDY+ T++ FE E PVR Sbjct: 1 MKMLTKFESKSTRAKGIAFHPSRPWVLVALFSSTIQLWDYRMGTLLHRFEDHEGPVRGLD 60 Query: 392 F 394 F Sbjct: 61 F 61 Score = 28.1 bits (61), Expect = 5.2 Identities = 14/40 (35%), Positives = 21/40 (52%) Frame = +2 Query: 242 SERVKSVDLHPTEPWILASLYSGTLCIWDYQTQTMVKSFE 361 + V SV HP + I++ TL +WD +T VK F+ Sbjct: 253 TNNVDSVIFHPHQNLIISVGEDKTLRVWDLDKRTPVKQFK 292
>COPA_HUMAN (P53621) Coatomer subunit alpha (Alpha-coat protein) (Alpha-COP)| (HEPCOP) (HEP-COP) [Contains: Xenin (Xenopsin-related peptide); Proxenin] Length = 1224 Score = 58.5 bits (140), Expect = 4e-09 Identities = 24/56 (42%), Positives = 35/56 (62%) Frame = +2 Query: 227 KFAQRSERVKSVDLHPTEPWILASLYSGTLCIWDYQTQTMVKSFEVSELPVRSAKF 394 KF +S RVK + HP PWIL SL++G + +WDY+ T++ F+ + PVR F Sbjct: 4 KFETKSARVKGLSFHPKRPWILTSLHNGVIQLWDYRMCTLIDKFDEHDGPVRGIDF 59 Score = 28.9 bits (63), Expect = 3.1 Identities = 10/33 (30%), Positives = 21/33 (63%) Frame = +2 Query: 251 VKSVDLHPTEPWILASLYSGTLCIWDYQTQTMV 349 +++ H PWIL++ T+ +W++Q++T V Sbjct: 96 IRTTFFHHEYPWILSASDDQTIRVWNWQSRTCV 128
>COPA_BOVIN (Q27954) Coatomer subunit alpha (Alpha-coat protein) (Alpha-COP)| (HEPCOP) (HEP-COP) [Contains: Xenin (Xenopsin-related peptide); Proxenin] Length = 1224 Score = 58.5 bits (140), Expect = 4e-09 Identities = 24/56 (42%), Positives = 35/56 (62%) Frame = +2 Query: 227 KFAQRSERVKSVDLHPTEPWILASLYSGTLCIWDYQTQTMVKSFEVSELPVRSAKF 394 KF +S RVK + HP PWIL SL++G + +WDY+ T++ F+ + PVR F Sbjct: 4 KFETKSARVKGLSFHPKRPWILTSLHNGVIQLWDYRMCTLIDKFDEHDGPVRGIDF 59 Score = 28.9 bits (63), Expect = 3.1 Identities = 10/33 (30%), Positives = 21/33 (63%) Frame = +2 Query: 251 VKSVDLHPTEPWILASLYSGTLCIWDYQTQTMV 349 +++ H PWIL++ T+ +W++Q++T V Sbjct: 96 IRTTFFHHEYPWILSASDDQTIRVWNWQSRTCV 128
>COPA_CANFA (P40765) Coatomer subunit alpha (Alpha-coat protein) (Alpha-COP)| (HEPCOP) (HEP-COP) [Contains: Xenin (Xenopsin-related peptide); Proxenin] (Fragment) Length = 35 Score = 38.5 bits (88), Expect = 0.004 Identities = 15/30 (50%), Positives = 20/30 (66%) Frame = +2 Query: 227 KFAQRSERVKSVDLHPTEPWILASLYSGTL 316 KF +S RVK + HP PWIL SL++G + Sbjct: 4 KFETKSARVKGLSFHPKRPWILTSLHNGVI 33
>Y143_SYNY3 (P74442) Hypothetical WD-repeat protein slr0143| Length = 1191 Score = 35.0 bits (79), Expect = 0.043 Identities = 16/40 (40%), Positives = 25/40 (62%) Frame = +2 Query: 236 QRSERVKSVDLHPTEPWILASLYSGTLCIWDYQTQTMVKS 355 QR E ++SV LHPT P + A G L +W++ T+++S Sbjct: 995 QRKEPIRSVSLHPTLPQLAAGDEQGNLTLWNFD-GTLIRS 1033
>YZLL_CAEEL (Q93847) Hypothetical WD-repeat protein K04G11.4| Length = 395 Score = 33.1 bits (74), Expect = 0.16 Identities = 18/61 (29%), Positives = 30/61 (49%) Frame = +2 Query: 218 IKRKFAQRSERVKSVDLHPTEPWILASLYSGTLCIWDYQTQTMVKSFEVSELPVRSAKFC 397 +K + + V P +ILAS + TL +WDYQ ++K + E ++K+C Sbjct: 267 VKTLIDEEHPPITHVKFSPNGKYILASNLNNTLKLWDYQKLRVLKEYTGHE----NSKYC 322 Query: 398 V 400 V Sbjct: 323 V 323
>SKB15_SCHPO (O74453) Shk1 kinase-binding protein 15| Length = 341 Score = 31.6 bits (70), Expect = 0.47 Identities = 13/38 (34%), Positives = 24/38 (63%) Frame = +2 Query: 215 EIKRKFAQRSERVKSVDLHPTEPWILASLYSGTLCIWD 328 +I +F +RVKSV +P + +++ + G++CIWD Sbjct: 230 KILHEFTAHKKRVKSV--YPVDDYLITASSDGSVCIWD 265
>WD51A_BOVIN (Q2TBP4) WD-repeat protein 51A| Length = 407 Score = 31.6 bits (70), Expect = 0.47 Identities = 14/60 (23%), Positives = 28/60 (46%) Frame = +2 Query: 215 EIKRKFAQRSERVKSVDLHPTEPWILASLYSGTLCIWDYQTQTMVKSFEVSELPVRSAKF 394 E + + V VD HP+ I A+ T+ +WD +T +++ +++ V + F Sbjct: 178 ECVHSYCEHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDVRTHRLLQHYQLHSAAVNALSF 237
>KAD_METCA (Q606F1) Adenylate kinase (EC 2.7.4.3) (ATP-AMP transphosphorylase)| Length = 214 Score = 31.6 bits (70), Expect = 0.47 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 7/60 (11%) Frame = +1 Query: 208 QVGDQEEVRAAVGEGQVGGSAPHRAMDPGELVLGDSLHLGL-------PDADHGEIIRSF 366 Q+ + +RAAV EG G + MD G+LV DS+ LGL PD +G ++ F Sbjct: 28 QISTGDMLRAAVREGTPLGMEAKKIMDAGQLV-SDSIILGLIKERIAAPDCANGFLLDGF 86
>WD51A_HUMAN (Q8NBT0) WD-repeat protein 51A| Length = 407 Score = 31.2 bits (69), Expect = 0.62 Identities = 14/60 (23%), Positives = 27/60 (45%) Frame = +2 Query: 215 EIKRKFAQRSERVKSVDLHPTEPWILASLYSGTLCIWDYQTQTMVKSFEVSELPVRSAKF 394 E + + V VD HP+ I A+ T+ +WD +T +++ +++ V F Sbjct: 178 ECVHSYCEHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDVRTHRLLQHYQLHSAAVNGLSF 237
>WD51A_MOUSE (Q8JZX3) WD-repeat protein 51A| Length = 405 Score = 30.8 bits (68), Expect = 0.80 Identities = 14/60 (23%), Positives = 28/60 (46%) Frame = +2 Query: 215 EIKRKFAQRSERVKSVDLHPTEPWILASLYSGTLCIWDYQTQTMVKSFEVSELPVRSAKF 394 E + + V VD HP+ I A+ T+ +WD +T +++ +++ V + F Sbjct: 178 ECIHSYCEHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDARTHRLLQHYQLHSAAVNALSF 237
>NUP37_HUMAN (Q8NFH4) Nucleoporin Nup37 (p37)| Length = 326 Score = 30.4 bits (67), Expect = 1.1 Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 1/50 (2%) Frame = +2 Query: 257 SVDLHPTEPW-ILASLYSGTLCIWDYQTQTMVKSFEVSELPVRSAKFCVR 403 SV HP E + ++ + +GT+ +D Q + S E ++P+ SA +C++ Sbjct: 170 SVCWHPEETFKLMVAEKNGTIRFYDLLAQQAILSLESEQVPLMSAHWCLK 219
>YC47_SCHPO (O14053) Hypothetical WD-repeat protein C1672.07 in chromosome III| Length = 902 Score = 30.0 bits (66), Expect = 1.4 Identities = 14/47 (29%), Positives = 23/47 (48%) Frame = +2 Query: 215 EIKRKFAQRSERVKSVDLHPTEPWILASLYSGTLCIWDYQTQTMVKS 355 +I R+ S R+ S D T W++ + GT+ WD T ++ S Sbjct: 563 KIVRELWGHSNRLTSFDFSDTGRWLVTASLDGTIRTWDLPTGHLIDS 609
>WDR23_HUMAN (Q8TEB1) WD-repeat protein 23| Length = 546 Score = 29.6 bits (65), Expect = 1.8 Identities = 13/39 (33%), Positives = 20/39 (51%) Frame = +2 Query: 218 IKRKFAQRSERVKSVDLHPTEPWILASLYSGTLCIWDYQ 334 I +K V+ V HP E I++S + G L +W Y+ Sbjct: 475 IVKKLTNHKACVRDVSWHPFEEKIVSSSWDGNLRLWQYR 513
>WDR23_MOUSE (Q91VU6) WD-repeat protein 23| Length = 549 Score = 29.6 bits (65), Expect = 1.8 Identities = 13/39 (33%), Positives = 20/39 (51%) Frame = +2 Query: 218 IKRKFAQRSERVKSVDLHPTEPWILASLYSGTLCIWDYQ 334 I +K V+ V HP E I++S + G L +W Y+ Sbjct: 475 IVKKLTNHKACVRDVSWHPFEEKIVSSSWDGNLRLWQYR 513
>AAC3_DICDI (P14197) AAC-rich mRNA clone AAC3 protein (Fragment)| Length = 437 Score = 29.6 bits (65), Expect = 1.8 Identities = 13/45 (28%), Positives = 21/45 (46%) Frame = +2 Query: 260 VDLHPTEPWILASLYSGTLCIWDYQTQTMVKSFEVSELPVRSAKF 394 ++ PT ++ A + +WD + VK+F S P RS F Sbjct: 324 MEFDPTGKYLAAGSADSIVSLWDIEDMMCVKTFIKSTFPCRSVSF 368
>KTNB1_STRPU (O61585) Katanin p80 WD40-containing subunit B1 (Katanin p80| subunit B1) (p80 katanin) Length = 690 Score = 29.3 bits (64), Expect = 2.3 Identities = 15/57 (26%), Positives = 25/57 (43%) Frame = +2 Query: 224 RKFAQRSERVKSVDLHPTEPWILASLYSGTLCIWDYQTQTMVKSFEVSELPVRSAKF 394 ++F + V ++ HP E + + T+ WD +T +V S VRS F Sbjct: 179 QEFKNHTGGVTGIEFHPNEFLLASGSSDRTVQFWDLETFQLVSSTSPGASAVRSISF 235
>NUP37_MOUSE (Q9CWU9) Nucleoporin Nup37| Length = 326 Score = 29.3 bits (64), Expect = 2.3 Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 1/50 (2%) Frame = +2 Query: 257 SVDLHPTEPW-ILASLYSGTLCIWDYQTQTMVKSFEVSELPVRSAKFCVR 403 SV HP E + ++ + +GT+ +D Q + S + + P+ SA +C++ Sbjct: 170 SVCWHPEETFKLMVAEKNGTIRFYDLMAQQAILSLQSEQTPLMSAHWCLK 219
>KTNB1_CHICK (Q5ZIU8) Katanin p80 WD40-containing subunit B1 (Katanin p80| subunit B1) (p80 katanin) Length = 657 Score = 29.3 bits (64), Expect = 2.3 Identities = 16/56 (28%), Positives = 24/56 (42%) Frame = +2 Query: 227 KFAQRSERVKSVDLHPTEPWILASLYSGTLCIWDYQTQTMVKSFEVSELPVRSAKF 394 +F S V V+ HP+E + + T+ WD + +V E PVR F Sbjct: 183 EFTGHSGPVNVVEFHPSEYLLASGSSDRTIRFWDLEKFHVVSCIEEEATPVRCILF 238
>KTNB1_BRARE (Q7ZUV2) Katanin p80 WD40-containing subunit B1 homolog| Length = 694 Score = 28.9 bits (63), Expect = 3.1 Identities = 16/56 (28%), Positives = 24/56 (42%) Frame = +2 Query: 227 KFAQRSERVKSVDLHPTEPWILASLYSGTLCIWDYQTQTMVKSFEVSELPVRSAKF 394 +F + V V HP E + + T+ +WD + M+ S E VRS F Sbjct: 184 EFTSHTSAVNVVQFHPNEYLLASGSADRTVKLWDLEKFNMIGSSEGETGVVRSVLF 239
>HAT2_YARLI (Q6C7Q4) Histone acetyltransferase type B subunit 2 (EC 2.3.1.48)| Length = 452 Score = 28.9 bits (63), Expect = 3.1 Identities = 10/19 (52%), Positives = 13/19 (68%) Frame = +2 Query: 242 SERVKSVDLHPTEPWILAS 298 S R+ D HPT PW++AS Sbjct: 403 SSRISDFDWHPTLPWVIAS 421
>YRIQ_CAEEL (P90794) Hypothetical WD-repeat protein D2030.9| Length = 571 Score = 28.9 bits (63), Expect = 3.1 Identities = 11/38 (28%), Positives = 20/38 (52%) Frame = +2 Query: 218 IKRKFAQRSERVKSVDLHPTEPWILASLYSGTLCIWDY 331 + R+ + V+ D HPTE I++S + G +W + Sbjct: 476 VSRRLKGHTAVVRECDWHPTENEIVSSAWDGVTTVWTW 513
>TLE6_MOUSE (Q9WVB3) Transducin-like enhancer protein 6 (Groucho-related| protein 6) Length = 581 Score = 28.9 bits (63), Expect = 3.1 Identities = 12/49 (24%), Positives = 26/49 (53%) Frame = +2 Query: 248 RVKSVDLHPTEPWILASLYSGTLCIWDYQTQTMVKSFEVSELPVRSAKF 394 ++ S+ PTE W+L L +G C+++ + + V + + + + KF Sbjct: 470 QIMSLAHSPTEDWLLLGLANGQHCLFNSRKRDQVLTVDTKDNTILGLKF 518
>KTNB1_MOUSE (Q8BG40) Katanin p80 WD40-containing subunit B1 (Katanin p80| subunit B1) (p80 katanin) Length = 658 Score = 28.5 bits (62), Expect = 4.0 Identities = 16/56 (28%), Positives = 24/56 (42%) Frame = +2 Query: 227 KFAQRSERVKSVDLHPTEPWILASLYSGTLCIWDYQTQTMVKSFEVSELPVRSAKF 394 +F + V V+ HP E + + T+ WD + +V E PVRS F Sbjct: 184 EFPGHTGPVNVVEFHPNEYLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLF 239
>DIP2_YEAST (Q12220) DOM34-interacting protein 2 (U3 small nucleolar| RNA-associated protein 12) (U3 snoRNA-associated protein 12) Length = 943 Score = 28.5 bits (62), Expect = 4.0 Identities = 16/53 (30%), Positives = 31/53 (58%) Frame = +2 Query: 203 PLRLEIKRKFAQRSERVKSVDLHPTEPWILASLYSGTLCIWDYQTQTMVKSFE 361 PL+ QR++ V+S+D+ +LA+ +G+L IW+ +T +++FE Sbjct: 379 PLKTHTIELQGQRTD-VRSIDISDDNK-LLATASNGSLKIWNIKTHKCIRTFE 429
>ZNF16_HUMAN (P17020) Zinc finger protein 16 (Zinc finger protein KOX9)| Length = 682 Score = 28.5 bits (62), Expect = 4.0 Identities = 10/24 (41%), Positives = 16/24 (66%) Frame = -1 Query: 350 SPWSASGSPRCRESPSTSSPGSMA 279 SPW+ + R R++P+ + PGS A Sbjct: 21 SPWTPAAQARVRDAPAVTHPGSAA 44
>HIRA_MOUSE (Q61666) HIRA protein (TUP1-like enhancer of split protein 1)| Length = 1015 Score = 28.5 bits (62), Expect = 4.0 Identities = 11/28 (39%), Positives = 17/28 (60%) Frame = +2 Query: 266 LHPTEPWILASLYSGTLCIWDYQTQTMV 349 LH T P+++A + TL +WD Q +V Sbjct: 778 LHCTGPYVMALTAAATLSVWDVHRQVVV 805
>KTNB1_HUMAN (Q9BVA0) Katanin p80 WD40-containing subunit B1 (Katanin p80| subunit B1) (p80 katanin) Length = 655 Score = 28.5 bits (62), Expect = 4.0 Identities = 16/56 (28%), Positives = 24/56 (42%) Frame = +2 Query: 227 KFAQRSERVKSVDLHPTEPWILASLYSGTLCIWDYQTQTMVKSFEVSELPVRSAKF 394 +F + V V+ HP E + + T+ WD + +V E PVRS F Sbjct: 184 EFPGHTGPVNVVEFHPNEYLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLF 239
>FBXW4_MOUSE (Q9JMJ2) F-box/WD-repeat protein 4 (F-box and WD-40 domain protein| 4) (Hagoromo protein) Length = 410 Score = 28.1 bits (61), Expect = 5.2 Identities = 10/36 (27%), Positives = 21/36 (58%) Frame = +2 Query: 296 SLYSGTLCIWDYQTQTMVKSFEVSELPVRSAKFCVR 403 S Y G + +WD + + + +F ++ P+ S +C+R Sbjct: 353 SSYYGLVRLWDRRQRACLHAFSLTSTPLSSPVYCLR 388
>YR154_MIMIV (Q5UPL6) Putative BTB/POZ domain and WD-repeat protein R154| Length = 468 Score = 28.1 bits (61), Expect = 5.2 Identities = 11/36 (30%), Positives = 23/36 (63%) Frame = +2 Query: 287 ILASLYSGTLCIWDYQTQTMVKSFEVSELPVRSAKF 394 IL ++G + IW+ + T+VKS ++ ++P+ S + Sbjct: 376 ILVGCHNGLMDIWNLKKLTLVKSTQLFDVPIISMTY 411
>TSSC1_PONPY (Q5RE10) Protein TSSC1| Length = 414 Score = 28.1 bits (61), Expect = 5.2 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%) Frame = +2 Query: 203 PLRLEIKRKFAQRSERVKSVDLHPTEPWILASL-YSGTLCI 322 PL+ + + + + V +VD +PW+ ASL Y G L I Sbjct: 361 PLQDNVIATYEEHEDSVYAVDWSSADPWLFASLSYDGRLVI 401
>PRP46_ASHGO (Q75BY3) Pre-mRNA-splicing factor PRP46 (Pre-mRNA-processing| protein 46) Length = 425 Score = 28.1 bits (61), Expect = 5.2 Identities = 15/61 (24%), Positives = 29/61 (47%) Frame = +2 Query: 209 RLEIKRKFAQRSERVKSVDLHPTEPWILASLYSGTLCIWDYQTQTMVKSFEVSELPVRSA 388 R + R F V SVDLHP+ I+++ + +WD ++++ V + P+ Sbjct: 187 RNTVVRDFHGTLSGVHSVDLHPSLDLIVSAGRDSVVRVWDIRSRSCVLTLAGHRGPINKV 246 Query: 389 K 391 + Sbjct: 247 R 247
>YKY4_CAEEL (Q17963) Hypothetical WD-repeat protein C14B1.4| Length = 376 Score = 28.1 bits (61), Expect = 5.2 Identities = 17/61 (27%), Positives = 27/61 (44%) Frame = +2 Query: 218 IKRKFAQRSERVKSVDLHPTEPWILASLYSGTLCIWDYQTQTMVKSFEVSELPVRSAKFC 397 IK + V V P +ILAS TL +WD+ +K + E ++K+C Sbjct: 248 IKTLVDDENPPVAFVKFSPNGKYILASNLDSTLKLWDFSKGKTLKQYTGHE----NSKYC 303 Query: 398 V 400 + Sbjct: 304 I 304
>TLE2_HUMAN (Q04725) Transducin-like enhancer protein 2 (ESG2)| Length = 743 Score = 28.1 bits (61), Expect = 5.2 Identities = 12/48 (25%), Positives = 22/48 (45%) Frame = +2 Query: 218 IKRKFAQRSERVKSVDLHPTEPWILASLYSGTLCIWDYQTQTMVKSFE 361 IK + + ++ + P + G + +WD Q QTMV+ F+ Sbjct: 539 IKAELTSSAPACYALAVSPDAKVCFSCCSDGNIVVWDLQNQTMVRQFQ 586
>TBX6_MOUSE (P70327) T-box transcription factor TBX6 (T-box protein 6)| Length = 540 Score = 28.1 bits (61), Expect = 5.2 Identities = 12/28 (42%), Positives = 17/28 (60%) Frame = +1 Query: 250 GQVGGSAPHRAMDPGELVLGDSLHLGLP 333 G + S P +A PG+L+L LH+G P Sbjct: 317 GDIRDSDPEQAPTPGKLLLPQLLHVGAP 344
>FBXW4_HUMAN (P57775) F-box/WD-repeat protein 4 (F-box and WD-40 domain protein| 4) (Dactylin) Length = 412 Score = 28.1 bits (61), Expect = 5.2 Identities = 10/36 (27%), Positives = 21/36 (58%) Frame = +2 Query: 296 SLYSGTLCIWDYQTQTMVKSFEVSELPVRSAKFCVR 403 S Y G + +WD + + + +F ++ P+ S +C+R Sbjct: 355 SSYYGVVRLWDRRQRACLHAFPLTSTPLSSPVYCLR 390
>TSSC1_MACFA (Q4R571) Protein TSSC1| Length = 387 Score = 28.1 bits (61), Expect = 5.2 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%) Frame = +2 Query: 203 PLRLEIKRKFAQRSERVKSVDLHPTEPWILASL-YSGTLCI 322 PL+ + + + + V +VD +PW+ ASL Y G L I Sbjct: 334 PLQDNVIATYEEHEDSVYAVDWSSADPWLFASLSYDGRLVI 374
>TSSC1_HUMAN (Q53HC9) Protein TSSC1 (Tumor-suppressing subchromosomal| transferable fragment candidate gene 1 protein) (Tumor-suppressing STF cDNA 1 protein) Length = 387 Score = 28.1 bits (61), Expect = 5.2 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%) Frame = +2 Query: 203 PLRLEIKRKFAQRSERVKSVDLHPTEPWILASL-YSGTLCI 322 PL+ + + + + V +VD +PW+ ASL Y G L I Sbjct: 334 PLQDNVIATYEEHEDSVYAVDWSSADPWLFASLSYDGRLVI 374
>WDS_DROME (Q9V3J8) Protein will die slowly| Length = 361 Score = 27.7 bits (60), Expect = 6.8 Identities = 14/50 (28%), Positives = 24/50 (48%) Frame = +2 Query: 251 VKSVDLHPTEPWILASLYSGTLCIWDYQTQTMVKSFEVSELPVRSAKFCV 400 V V P +ILA+ TL +WDY +K++ ++ K+C+ Sbjct: 244 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH----KNEKYCI 289
>TSSC1_RAT (Q5PPK9) Protein TSSC1| Length = 386 Score = 27.7 bits (60), Expect = 6.8 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%) Frame = +2 Query: 203 PLRLEIKRKFAQRSERVKSVDLHPTEPWILASL-YSGTLCI 322 PL+ + + + + V +VD +PW+ ASL Y G L I Sbjct: 333 PLQDNVIATYEEHEDSVYAVDWASADPWLFASLSYDGRLVI 373
>TSCC1_MOUSE (Q8K0G5) Protein TSSC1| Length = 386 Score = 27.7 bits (60), Expect = 6.8 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%) Frame = +2 Query: 203 PLRLEIKRKFAQRSERVKSVDLHPTEPWILASL-YSGTLCI 322 PL+ + + + + V +VD +PW+ ASL Y G L I Sbjct: 333 PLQDNVIATYEEHEDSVYAVDWASADPWLFASLSYDGRLVI 373
>RNC_RHOPA (Q6N6C1) Ribonuclease III (EC 3.1.26.3) (RNase III)| Length = 272 Score = 27.7 bits (60), Expect = 6.8 Identities = 15/34 (44%), Positives = 19/34 (55%) Frame = +1 Query: 298 LVLGDSLHLGLPDADHGEIIRSFRAASAVGKILC 399 L++ D L+ PDAD GE+ S R A V K C Sbjct: 93 LIVSDMLYRAFPDADEGEL--SKRLADLVRKETC 124
>WDR5_MOUSE (P61965) WD-repeat protein 5 (BMP2-induced 3-kb gene protein)| (WD-repeat protein BIG-3) Length = 334 Score = 27.7 bits (60), Expect = 6.8 Identities = 14/50 (28%), Positives = 24/50 (48%) Frame = +2 Query: 251 VKSVDLHPTEPWILASLYSGTLCIWDYQTQTMVKSFEVSELPVRSAKFCV 400 V V P +ILA+ TL +WDY +K++ ++ K+C+ Sbjct: 217 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH----KNEKYCI 262
>WDR5_HUMAN (P61964) WD-repeat protein 5 (BMP2-induced 3-kb gene protein)| Length = 334 Score = 27.7 bits (60), Expect = 6.8 Identities = 14/50 (28%), Positives = 24/50 (48%) Frame = +2 Query: 251 VKSVDLHPTEPWILASLYSGTLCIWDYQTQTMVKSFEVSELPVRSAKFCV 400 V V P +ILA+ TL +WDY +K++ ++ K+C+ Sbjct: 217 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH----KNEKYCI 262
>LE14B_PRUAR (O24467) LEC14B homolog| Length = 475 Score = 27.7 bits (60), Expect = 6.8 Identities = 10/37 (27%), Positives = 19/37 (51%) Frame = +2 Query: 251 VKSVDLHPTEPWILASLYSGTLCIWDYQTQTMVKSFE 361 V+ HP P +++S + GT+ W++ V + E Sbjct: 428 VRDCSWHPLYPMLVSSSWDGTIARWEFPGDDQVPTLE 464
>GBB_ORYSA (Q40687) Guanine nucleotide-binding protein beta subunit| Length = 380 Score = 27.7 bits (60), Expect = 6.8 Identities = 14/45 (31%), Positives = 22/45 (48%) Frame = +2 Query: 203 PLRLEIKRKFAQRSERVKSVDLHPTEPWILASLYSGTLCIWDYQT 337 P L R S +V S+D P + WI+++ G L +W+ T Sbjct: 53 PTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALT 97
>GBB_MAIZE (P49178) Guanine nucleotide-binding protein beta subunit| Length = 380 Score = 27.7 bits (60), Expect = 6.8 Identities = 14/45 (31%), Positives = 22/45 (48%) Frame = +2 Query: 203 PLRLEIKRKFAQRSERVKSVDLHPTEPWILASLYSGTLCIWDYQT 337 P L R S +V S+D P + WI+++ G L +W+ T Sbjct: 53 PTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALT 97
>DMXL1_HUMAN (Q9Y485) Protein DmX-like 1 (X-like 1 protein)| Length = 3027 Score = 27.7 bits (60), Expect = 6.8 Identities = 15/50 (30%), Positives = 25/50 (50%) Frame = +2 Query: 221 KRKFAQRSERVKSVDLHPTEPWILASLYSGTLCIWDYQTQTMVKSFEVSE 370 ++ F VK+V + PTE + + G + IW T ++ +F VSE Sbjct: 2921 RQLFQSHDSPVKAVAVDPTEEYFVTGSAEGNIKIWSLSTFGLLHTF-VSE 2969
>LUXS_BACHD (Q9K7K8) S-ribosylhomocysteine lyase (EC 4.4.1.21) (Autoinducer-2| production protein luxS) (AI-2 synthesis protein) Length = 158 Score = 27.7 bits (60), Expect = 6.8 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 4/62 (6%) Frame = +2 Query: 224 RKFAQRSERVKSVDLHP----TEPWILASLYSGTLCIWDYQTQTMVKSFEVSELPVRSAK 391 RKFA+ + +DL P T +++ S I D QTM S E+ E+P + K Sbjct: 65 RKFAEAYDHFDVIDLSPMGCQTGFYLIMSGKPTVEEIIDVLEQTMKYSLELEEVPAANEK 124 Query: 392 FC 397 C Sbjct: 125 QC 126
>VPS15_PICPA (Q9UVG6) Putative serine/threonine-protein kinase VPS15 (EC 2.7.11.1)| (Vacuolar protein sorting protein 15) Length = 1339 Score = 27.3 bits (59), Expect = 8.9 Identities = 11/38 (28%), Positives = 22/38 (57%) Frame = +2 Query: 251 VKSVDLHPTEPWILASLYSGTLCIWDYQTQTMVKSFEV 364 + S DL ++ W+L G L +D + + +VKS+++ Sbjct: 1093 ITSFDLDSSQSWLLIGTSKGILDFYDLRFELLVKSWKL 1130
>WDR34_MOUSE (Q5U4F6) WD-repeat protein 34| Length = 535 Score = 27.3 bits (59), Expect = 8.9 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%) Frame = +2 Query: 251 VKSVDLHPTEP-WILASLYSGTLCIWD 328 V + HPT+P I LYSG + +WD Sbjct: 219 VMCLAFHPTQPSHIAGGLYSGEVLVWD 245
>PF20_CHLRE (P93107) Flagellar WD-repeat protein PF20| Length = 606 Score = 27.3 bits (59), Expect = 8.9 Identities = 13/48 (27%), Positives = 22/48 (45%) Frame = +2 Query: 251 VKSVDLHPTEPWILASLYSGTLCIWDYQTQTMVKSFEVSELPVRSAKF 394 V VD HP + + + IWD++ Q V +F + + S +F Sbjct: 371 VAGVDFHPAGTCLASGGGDSAVKIWDFEKQRCVTTFTDHKQAIWSVRF 418
>TAF5_YEAST (P38129) Transcription initiation factor TFIID subunit 5| (TBP-associated factor 5) (TBP-associated factor 90 kDa) (TAFII-90) Length = 798 Score = 27.3 bits (59), Expect = 8.9 Identities = 17/58 (29%), Positives = 21/58 (36%) Frame = +2 Query: 224 RKFAQRSERVKSVDLHPTEPWILASLYSGTLCIWDYQTQTMVKSFEVSELPVRSAKFC 397 R FA V V HP ++ T +WD T V+ F PV S C Sbjct: 603 RIFAGHLNDVDCVSFHPNGCYVFTGSSDKTCRMWDVSTGDSVRLFLGHTAPVISIAVC 660
>TAF5_MOUSE (Q8C092) Transcription initiation factor TFIID subunit 5| (Transcription initiation factor TFIID 100 kDa subunit) (TAF(II)100) (TAFII-100) (TAFII100) Length = 801 Score = 27.3 bits (59), Expect = 8.9 Identities = 13/48 (27%), Positives = 22/48 (45%) Frame = +2 Query: 251 VKSVDLHPTEPWILASLYSGTLCIWDYQTQTMVKSFEVSELPVRSAKF 394 V P ++L+S GT+ +W QT T + ++ PV +F Sbjct: 547 VYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQF 594
>TLE1_XENLA (O42469) Enhancer of split groucho-like protein 1| Length = 767 Score = 27.3 bits (59), Expect = 8.9 Identities = 11/48 (22%), Positives = 22/48 (45%) Frame = +2 Query: 218 IKRKFAQRSERVKSVDLHPTEPWILASLYSGTLCIWDYQTQTMVKSFE 361 IK + + ++ + P + G + +WD Q QT+V+ F+ Sbjct: 563 IKAELTSSAPACYALAISPDAKVCFSCCSDGNIVVWDLQNQTLVRQFQ 610
>TAF5_HUMAN (Q15542) Transcription initiation factor TFIID subunit 5| (Transcription initiation factor TFIID 100 kDa subunit) (TAF(II)100) (TAFII-100) (TAFII100) Length = 800 Score = 27.3 bits (59), Expect = 8.9 Identities = 13/48 (27%), Positives = 22/48 (45%) Frame = +2 Query: 251 VKSVDLHPTEPWILASLYSGTLCIWDYQTQTMVKSFEVSELPVRSAKF 394 V P ++L+S GT+ +W QT T + ++ PV +F Sbjct: 546 VYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQF 593
>BOP1_MOUSE (P97452) Ribosome biogenesis protein BOP1 (Block of proliferation 1| protein) Length = 732 Score = 27.3 bits (59), Expect = 8.9 Identities = 10/22 (45%), Positives = 14/22 (63%) Frame = +2 Query: 251 VKSVDLHPTEPWILASLYSGTL 316 V V HPT+PW+ +S GT+ Sbjct: 707 VLDVAFHPTQPWVFSSGADGTI 728
>YR739_MIMIV (Q5UNZ2) Putative BTB/POZ domain and WD-repeat protein R739| Length = 490 Score = 27.3 bits (59), Expect = 8.9 Identities = 12/49 (24%), Positives = 25/49 (51%) Frame = +2 Query: 248 RVKSVDLHPTEPWILASLYSGTLCIWDYQTQTMVKSFEVSELPVRSAKF 394 ++ +D +I + G +WD++T +VK+F +S + + KF Sbjct: 325 KINCIDCSSNNKYIASGDDDGQTIVWDFETGNIVKTF-ISMSEIYAVKF 372
>RNP2_PYRFU (Q8U151) Ribonuclease P protein component 2 (EC 3.1.26.5) (RNase P| component 2) Length = 120 Score = 27.3 bits (59), Expect = 8.9 Identities = 9/19 (47%), Positives = 11/19 (57%) Frame = +3 Query: 291 WRACTRGLSASGTTRRRPW 347 W AC R L GT + +PW Sbjct: 39 WNACLRTLGELGTAKAKPW 57 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.314 0.134 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 33,423,801 Number of Sequences: 219361 Number of extensions: 507441 Number of successful extensions: 1769 Number of sequences better than 10.0: 67 Number of HSP's better than 10.0 without gapping: 1622 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1769 length of database: 80,573,946 effective HSP length: 110 effective length of database: 56,444,236 effective search space used: 1354661664 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits)
