ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl19a06 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK111584.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013089O14, full insert sequence Length = 3391 Score = 214 bits (108), Expect = 2e-52 Identities = 168/188 (89%) Strand = Plus / Plus Query: 207 tcaggttggagatcaagaggaagttcgcgcagcggtcggagagggtcaagtcggtggatc 266 ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| Sbjct: 187 tcaggttggagatcaagaggaagtttgcgcaacggtcggagagggtcaagtcggtggatc 246 Query: 267 tgcaccccaccgagccatggatcctggcgagcttgtactcggggactctctgcatctggg 326 |||||||||| ||||||||||||||| |||| | ||||| |||| | |||||||||| Sbjct: 247 tgcaccccacggagccatggatcctgtcgagtctttactccgggagcgtgtgcatctggg 306 Query: 327 actaccagacgcagaccatggtgaaatcattcgaagtttcagagctgccagtgcggtcgg 386 |||| ||| ||||||| |||||||| ||||| ||||||||||| ||||||||||||| | Sbjct: 307 actatcagtcgcagacaatggtgaagtcatttgaagtttcagaattgccagtgcggtcag 366 Query: 387 caaaattt 394 |||||||| Sbjct: 367 caaaattt 374
>ref|XM_464583.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2733 Score = 163 bits (82), Expect = 5e-37 Identities = 154/178 (86%) Strand = Plus / Plus Query: 207 tcaggttggagatcaagaggaagttcgcgcagcggtcggagagggtcaagtcggtggatc 266 |||||||||| |||||||||||| |||||||| ||||||||||||||||||| ||||||| Sbjct: 8 tcaggttggatatcaagaggaagctcgcgcagaggtcggagagggtcaagtccgtggatc 67 Query: 267 tgcaccccaccgagccatggatcctggcgagcttgtactcggggactctctgcatctggg 326 |||| || |||||||||||||| || |||| |||| || |||| ||||||||||| Sbjct: 68 tgcatccgaccgagccatggattttgtcgagtctgtattcagggagcgtctgcatctgga 127 Query: 327 actaccagacgcagaccatggtgaaatcattcgaagtttcagagctgccagtgcggtc 384 |||||||||||||||| |||||||||||||| ||||| ||||| | ||||| ||||| Sbjct: 128 actaccagacgcagacgatggtgaaatcatttgaagtcacagagttaccagttcggtc 185
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 105 bits (53), Expect = 1e-19 Identities = 62/65 (95%) Strand = Plus / Minus Query: 222 agaggaagttcgcgcagcggtcggagagggtcaagtcggtggatctgcaccccaccgagc 281 |||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||| Sbjct: 2328167 agaggaagtttgcgcaacggtcggagagggtcaagtcggtggatctgcaccccacggagc 2328108 Query: 282 catgg 286 ||||| Sbjct: 2328107 catgg 2328103 Score = 42.1 bits (21), Expect = 1.4 Identities = 30/33 (90%) Strand = Plus / Minus Query: 337 gcagaccatggtgaaatcattcgaagtttcaga 369 |||||| |||||||| ||||| ||||||||||| Sbjct: 2327207 gcagacaatggtgaagtcatttgaagtttcaga 2327175
>dbj|AP003487.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0007O20 Length = 147363 Score = 105 bits (53), Expect = 1e-19 Identities = 62/65 (95%) Strand = Plus / Minus Query: 222 agaggaagttcgcgcagcggtcggagagggtcaagtcggtggatctgcaccccaccgagc 281 |||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||| Sbjct: 49968 agaggaagtttgcgcaacggtcggagagggtcaagtcggtggatctgcaccccacggagc 49909 Query: 282 catgg 286 ||||| Sbjct: 49908 catgg 49904 Score = 42.1 bits (21), Expect = 1.4 Identities = 30/33 (90%) Strand = Plus / Minus Query: 337 gcagaccatggtgaaatcattcgaagtttcaga 369 |||||| |||||||| ||||| ||||||||||| Sbjct: 49008 gcagacaatggtgaagtcatttgaagtttcaga 48976
>ref|XM_464582.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2628 Score = 93.7 bits (47), Expect = 4e-16 Identities = 101/119 (84%) Strand = Plus / Plus Query: 222 agaggaagttcgcgcagcggtcggagagggtcaagtcggtggatctgcaccccaccgagc 281 |||||||| |||||||| |||||||||||| |||||| ||||||||||| || ||||||| Sbjct: 21 agaggaagctcgcgcagaggtcggagagggccaagtccgtggatctgcatccgaccgagc 80 Query: 282 catggatcctggcgagcttgtactcggggactctctgcatctgggactaccagacgcag 340 ||||||| || |||| |||| || |||| | ||||||||| |||||||||||||| Sbjct: 81 catggattttgtcgagtctgtattcagggagcgtttgcatctggaactaccagacgcag 139
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 89.7 bits (45), Expect = 7e-15 Identities = 60/65 (92%) Strand = Plus / Minus Query: 222 agaggaagttcgcgcagcggtcggagagggtcaagtcggtggatctgcaccccaccgagc 281 |||||||| |||||||| ||||||||||||||||||| ||||||||||| || ||||||| Sbjct: 6140426 agaggaagctcgcgcagaggtcggagagggtcaagtccgtggatctgcatccgaccgagc 6140367 Query: 282 catgg 286 ||||| Sbjct: 6140366 catgg 6140362 Score = 81.8 bits (41), Expect = 2e-12 Identities = 59/65 (90%) Strand = Plus / Minus Query: 222 agaggaagttcgcgcagcggtcggagagggtcaagtcggtggatctgcaccccaccgagc 281 |||||||| |||||||| |||||||||||| |||||| ||||||||||| || ||||||| Sbjct: 6127729 agaggaagctcgcgcagaggtcggagagggccaagtccgtggatctgcatccgaccgagc 6127670 Query: 282 catgg 286 ||||| Sbjct: 6127669 catgg 6127665 Score = 44.1 bits (22), Expect = 0.35 Identities = 25/26 (96%) Strand = Plus / Minus Query: 315 tctgcatctgggactaccagacgcag 340 ||||||||||| |||||||||||||| Sbjct: 6140221 tctgcatctggaactaccagacgcag 6140196 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 317 tgcatctgggactaccagacgcag 340 ||||||||| |||||||||||||| Sbjct: 6127523 tgcatctggaactaccagacgcag 6127500
>dbj|AP003977.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1006_A02 Length = 175153 Score = 89.7 bits (45), Expect = 7e-15 Identities = 60/65 (92%) Strand = Plus / Minus Query: 222 agaggaagttcgcgcagcggtcggagagggtcaagtcggtggatctgcaccccaccgagc 281 |||||||| |||||||| ||||||||||||||||||| ||||||||||| || ||||||| Sbjct: 105908 agaggaagctcgcgcagaggtcggagagggtcaagtccgtggatctgcatccgaccgagc 105849 Query: 282 catgg 286 ||||| Sbjct: 105848 catgg 105844 Score = 81.8 bits (41), Expect = 2e-12 Identities = 59/65 (90%) Strand = Plus / Minus Query: 222 agaggaagttcgcgcagcggtcggagagggtcaagtcggtggatctgcaccccaccgagc 281 |||||||| |||||||| |||||||||||| |||||| ||||||||||| || ||||||| Sbjct: 93211 agaggaagctcgcgcagaggtcggagagggccaagtccgtggatctgcatccgaccgagc 93152 Query: 282 catgg 286 ||||| Sbjct: 93151 catgg 93147 Score = 44.1 bits (22), Expect = 0.35 Identities = 25/26 (96%) Strand = Plus / Minus Query: 315 tctgcatctgggactaccagacgcag 340 ||||||||||| |||||||||||||| Sbjct: 105703 tctgcatctggaactaccagacgcag 105678 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 317 tgcatctgggactaccagacgcag 340 ||||||||| |||||||||||||| Sbjct: 93005 tgcatctggaactaccagacgcag 92982
>ref|NM_106648.2| Arabidopsis thaliana protein transporter AT1G79990 mRNA, complete cds Length = 3179 Score = 69.9 bits (35), Expect = 6e-09 Identities = 71/83 (85%) Strand = Plus / Plus Query: 278 gagccatggatcctggcgagcttgtactcggggactctctgcatctgggactaccagacg 337 ||||||||||||||||| || ||||| || || ||||| ||||||||| | |||||||| Sbjct: 206 gagccatggatcctggcaagtttgtattccggaactctgtgcatctggaattaccagacc 265 Query: 338 cagaccatggtgaaatcattcga 360 ||||| ||||| ||||| ||||| Sbjct: 266 cagacaatggtaaaatctttcga 288
>gb|AY090955.1| Arabidopsis thaliana putative coatomer protein complex, subunit beta 2 (beta prime) (At1g79990) mRNA, complete cds Length = 3162 Score = 69.9 bits (35), Expect = 6e-09 Identities = 71/83 (85%) Strand = Plus / Plus Query: 278 gagccatggatcctggcgagcttgtactcggggactctctgcatctgggactaccagacg 337 ||||||||||||||||| || ||||| || || ||||| ||||||||| | |||||||| Sbjct: 206 gagccatggatcctggcaagtttgtattccggaactctgtgcatctggaattaccagacc 265 Query: 338 cagaccatggtgaaatcattcga 360 ||||| ||||| ||||| ||||| Sbjct: 266 cagacaatggtaaaatctttcga 288
>ref|XM_422637.1| PREDICTED: Gallus gallus similar to beta prime cop (LOC424823), mRNA Length = 3274 Score = 46.1 bits (23), Expect = 0.088 Identities = 32/35 (91%) Strand = Plus / Plus Query: 260 gtggatctgcaccccaccgagccatggatcctggc 294 ||||| ||||||||||| ||||||||||| ||||| Sbjct: 346 gtggacctgcaccccacagagccatggatgctggc 380
>emb|BX006538.1|CNS08D7I Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAA11AC02 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 970 Score = 46.1 bits (23), Expect = 0.088 Identities = 32/35 (91%) Strand = Plus / Plus Query: 254 aagtcggtggatctgcaccccaccgagccatggat 288 |||||||| ||||||||||| || ||||||||||| Sbjct: 161 aagtcggtagatctgcacccgacggagccatggat 195
>gb|DQ363460.1| Ictalurus punctatus clone C145DB06 hypothetical protein mRNA, partial cds Length = 867 Score = 46.1 bits (23), Expect = 0.088 Identities = 32/35 (91%) Strand = Plus / Plus Query: 260 gtggatctgcaccccaccgagccatggatcctggc 294 |||||||| || ||||||||||||||||| ||||| Sbjct: 61 gtggatctccatcccaccgagccatggatgctggc 95
>ref|XM_318012.2| Anopheles gambiae str. PEST ENSANGP00000010744 (ENSANGG00000008255), partial mRNA Length = 2466 Score = 46.1 bits (23), Expect = 0.088 Identities = 32/35 (91%) Strand = Plus / Plus Query: 254 aagtcggtggatctgcaccccaccgagccatggat 288 |||||||| ||||||||||| || ||||||||||| Sbjct: 52 aagtcggtagatctgcacccgacggagccatggat 86
>gb|AC150654.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0094L06, complete sequence Length = 189328 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 8 ctcctcccaccccgcttcgctcctc 32 ||||||||||||||| ||||||||| Sbjct: 171638 ctcctcccaccccgcctcgctcctc 171614
>gb|AC114012.5| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0079H11, complete sequence Length = 143925 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 8 ctcctcccaccccgcttcgctcctc 32 ||||||||||||||| ||||||||| Sbjct: 50958 ctcctcccaccccgcctcgctcctc 50934
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 8 ctcctcccaccccgcttcgctcctc 32 ||||||||||||||| ||||||||| Sbjct: 16185638 ctcctcccaccccgcctcgctcctc 16185614
>dbj|AK099761.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013093N23, full insert sequence Length = 2078 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 8 ctcctcccaccccgcttcgctcctc 32 ||||||||||||||| ||||||||| Sbjct: 396 ctcctcccaccccgcctcgctcctc 372
>gb|AC108762.2| Oryza sativa (japonica cultivar-group) chromosome 9 clone OSJNBb0052C07, complete sequence Length = 154528 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 8 ctcctcccaccccgcttcgc 27 |||||||||||||||||||| Sbjct: 86588 ctcctcccaccccgcttcgc 86569
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 370 gctgccagtgcggtcggcaa 389 |||||||||||||||||||| Sbjct: 5040590 gctgccagtgcggtcggcaa 5040609
>gb|DP000059.1| Carollia perspicillata target 117 genomic scaffold Length = 359132 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 9 tcctcccaccccgcttcgctcctc 32 |||||||||||||||||| ||||| Sbjct: 88216 tcctcccaccccgcttcgttcctc 88239 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,773,323 Number of Sequences: 3902068 Number of extensions: 1773323 Number of successful extensions: 30808 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 20 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 30727 Number of HSP's gapped (non-prelim): 79 length of query: 404 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 382 effective length of database: 17,147,199,772 effective search space: 6550230312904 effective search space used: 6550230312904 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
