ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl18h12 |
|---|---|
| Clone Library Name | barley_pub |
>UHRF2_MOUSE (Q7TMI3) Ubiquitin-like PHD and RING finger domain-containing| protein 2 (EC 6.3.2.-) (Ubiquitin-like-containing PHD and RING finger domains protein 2) (Np95-like ring finger protein) (Nuclear zinc finger protein Np97) (NIRF) Length = 803 Score = 34.3 bits (77), Expect = 0.080 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 2/57 (3%) Frame = +3 Query: 150 CDECGDVGYSHLLLRCSNCNNAARHRYCLDEINFDLAVE--WLCSDCIPXHSEAIKS 314 C +CG+ ++ L C C N A H YCL + E W C C SE +K+ Sbjct: 348 CHKCGEKRDPNMQLLCDEC-NMAYHIYCLSPPLDKVPEEEYWYCPSCKTDSSEVVKA 403
>MLL2_HUMAN (O14686) Myeloid/lymphoid or mixed-lineage leukemia protein 2| (ALL1-related protein) Length = 5262 Score = 33.1 bits (74), Expect = 0.18 Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 1/59 (1%) Frame = +3 Query: 147 VCDECGDVGYSHLLLRCSNCNNAARHRYCLDEINFDLAV-EWLCSDCIPXHSEAIKSPG 320 VC+ CG LL C +C + + H YCLD + W C C+ SPG Sbjct: 1154 VCEVCGQASDPSRLLLCDDC-DISYHTYCLDPPLLTVPKGGWKCKWCVSCMQCGAASPG 1211
>ATXR5_ARATH (Q8VZJ1) Histone-lysine N-methyltransferase ATXR5 (EC 2.1.1.43)| (Trithorax-related protein 5) (TRX-related protein 5) (Protein SET DOMAIN GROUP 15) Length = 352 Score = 32.7 bits (73), Expect = 0.23 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 1/64 (1%) Frame = +3 Query: 96 PLVREAEDLRRRREMDDVCDECGDVGYSHLLLRCSNCNNAARHRYCLDEINFDLAV-EWL 272 P+V + E+ + C++CG LL C C+ H CL I + + WL Sbjct: 49 PVVEQEEEEDEDSYSNVTCEKCGSGEGDDELLLCDKCDRGF-HMKCLRPIVVRVPIGTWL 107 Query: 273 CSDC 284 C DC Sbjct: 108 CVDC 111
>PKL_ARATH (Q9S775) CHD3-type chromatin remodeling factor PICKLE (EC 3.6.1.-)| (Protein GYMNOS) Length = 1384 Score = 31.6 bits (70), Expect = 0.52 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 1/74 (1%) Frame = +3 Query: 93 DPLVREAEDLRRRREMDDVCDECGDVGYSHLLLRCSNCNNAARHRYCLDEINFDLAVE-W 269 D + E + R ++ C CG+ S L+ C+ C A H CL D +VE W Sbjct: 33 DRTFEQVEAIVRTDAKENACQACGE---STNLVSCNTCTYAF-HAKCLVPPLKDASVENW 88 Query: 270 LCSDCIPXHSEAIK 311 C +C+ +E K Sbjct: 89 RCPECVSPLNEIDK 102
>ATXR6_ARATH (Q9FNE9) Histone-lysine N-methyltransferase ATXR6 (EC 2.1.1.43)| (Trithorax-related protein 6) (TRX-related protein 6) (Protein SET DOMAIN GROUP 34) Length = 349 Score = 30.8 bits (68), Expect = 0.89 Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 1/51 (1%) Frame = +3 Query: 135 EMDDVCDECGDVGYSHLLLRCSNCNNAARHRYCLDEINFDLAV-EWLCSDC 284 + D VC+EC LL C C+ H +CL I + W C C Sbjct: 30 DWDTVCEECSSGKQPAKLLLCDKCDKGF-HLFCLRPILVSVPKGSWFCPSC 79
>CHD3_DROME (O16102) Chromodomain helicase-DNA-binding protein 3 (EC 3.6.1.-)| (ATP-dependent helicase Chd3) Length = 892 Score = 29.6 bits (65), Expect = 2.0 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%) Frame = +3 Query: 141 DDVCDECGDVGYSHLLLRCSNCNNAARHRYCLDEINFDLAV-EWLCSDCIPXHSEAIK 311 ++ C C D G LL C +C + HR CL + +W+C CIP +A K Sbjct: 35 EEYCKVCSDGGD---LLCCDSCPSVY-HRTCLSPPLKSIPKGDWICPRCIPLPGKAEK 88
>TIF1A_HUMAN (O15164) Transcription intermediary factor 1-alpha (TIF1-alpha)| (Tripartite motif protein 24) (RING finger protein 82) Length = 1050 Score = 29.6 bits (65), Expect = 2.0 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%) Frame = +3 Query: 195 CSNC-NNAARHRYCLDEINFDLAVEWLCSDCIPXH 296 C++C +NA + +C++ VEWLC CI H Sbjct: 163 CTSCEDNAEANGFCVE------CVEWLCKTCIRAH 191
>TIF1A_MOUSE (Q64127) Transcription intermediary factor 1-alpha (TIF1-alpha)| (Tripartite motif protein 24) Length = 1051 Score = 29.6 bits (65), Expect = 2.0 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%) Frame = +3 Query: 195 CSNC-NNAARHRYCLDEINFDLAVEWLCSDCIPXH 296 C++C +NA + +C++ VEWLC CI H Sbjct: 163 CTSCEDNAEANGFCVE------CVEWLCKTCIRAH 191
>MLL3_HUMAN (Q8NEZ4) Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog| (Histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3) (EC 2.1.1.43) (Homologous to ALR protein) Length = 4911 Score = 29.3 bits (64), Expect = 2.6 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%) Frame = +3 Query: 147 VCDECGDVGYSHLLLRCSNCNNAARHRYCLD-EINFDLAVEWLCSDCI 287 VC+ CG LL C +C + + H YCLD + W C C+ Sbjct: 1009 VCEACGKATDPGRLLLCDDC-DISYHTYCLDPPLQTVPKGGWKCKWCV 1055
>RPC2_YEAST (P22276) DNA-directed RNA polymerase III 130 kDa polypeptide (EC| 2.7.7.6) (C128) (RNA polymerase III subunit 2) Length = 1149 Score = 29.3 bits (64), Expect = 2.6 Identities = 11/23 (47%), Positives = 14/23 (60%) Frame = +3 Query: 144 DVCDECGDVGYSHLLLRCSNCNN 212 DVCD+CG +GYS C + N Sbjct: 1093 DVCDKCGLMGYSGWCTTCKSAEN 1115
>MLL3_MOUSE (Q8BRH4) Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog| (Histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3) (EC 2.1.1.43) Length = 4903 Score = 29.3 bits (64), Expect = 2.6 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%) Frame = +3 Query: 147 VCDECGDVGYSHLLLRCSNCNNAARHRYCLD-EINFDLAVEWLCSDCI 287 VC+ CG LL C +C + + H YCLD + W C C+ Sbjct: 1002 VCEACGKATDPGRLLLCDDC-DISYHTYCLDPPLQTVPKGGWKCKWCV 1048
>FILA_HUMAN (P20930) Filaggrin| Length = 4061 Score = 28.9 bits (63), Expect = 3.4 Identities = 19/56 (33%), Positives = 22/56 (39%) Frame = -3 Query: 288 GYNHYTTTPLPNQSLSHPSNTGA*QRXXXXXXXAEGDCSRHLHTRRTHHPSRGASS 121 GY+H TTP SH + GD SRH +R H PS A S Sbjct: 1516 GYHHSHTTPQGRSDASHGQSGPRSASRQTRNEEQSGDGSRHSGSRH-HEPSTRAGS 1570
>KPC2_DROME (P13677) Protein kinase C, eye isozyme (EC 2.7.11.13) (PKC)| (dPKC53E(EY)) (Protein INAC) (Inactivation no after-potential C protein) (Photoreceptor-specific PKC) (Eye-PKC) Length = 700 Score = 28.9 bits (63), Expect = 3.4 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 2/27 (7%) Frame = +3 Query: 150 CDECGDV--GYSHLLLRCSNCNNAARH 224 CDECG + G +H ++C NCN H Sbjct: 150 CDECGLLLHGVAHQGVKCENCNLNVHH 176
>ESR1_ICTPU (Q9YHZ7) Estrogen receptor (ER) (Estradiol receptor) (ER-alpha)| Length = 617 Score = 28.9 bits (63), Expect = 3.4 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 4/30 (13%) Frame = -3 Query: 159 TRRTHHPSRGAS--SDLP--PPGLEDHPKP 82 T THHPS G++ +DLP PPG P P Sbjct: 588 TTTTHHPSNGSTCPADLPSNPPGPGQSPSP 617
>PRH_PETCR (P48786) Pathogenesis-related homeodomain protein (PRHP)| Length = 1088 Score = 28.5 bits (62), Expect = 4.4 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 8/64 (12%) Frame = +3 Query: 117 DLRRRREMDDV-CDECG--DVGYSHLLLRCSNCNNAARHRYCLDEINFDLAVE-----WL 272 D R + +D+ C +CG DV S+ ++ C + H++CLD + WL Sbjct: 569 DSRGEIDSEDIFCAKCGSKDVTLSNDIILCDGACDRGFHQFCLDPPLLKEYIPPDDEGWL 628 Query: 273 CSDC 284 C C Sbjct: 629 CPGC 632
>PHF10_XENLA (Q63ZP1) PHD finger protein 10| Length = 417 Score = 28.1 bits (61), Expect = 5.8 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 4/42 (9%) Frame = +3 Query: 171 GYSHLLLRCSNCNNAARHRYCLDEINFDLAV----EWLCSDC 284 G S L+ CS C+N+ H CLD +AV W C +C Sbjct: 312 GRSERLIHCSQCDNSG-HPSCLDMSAELVAVIKKYPWQCMEC 352
>ATX2_ARATH (Q9MA43) Histone-lysine N-methyltransferase ATX2 (EC 2.1.1.43)| (Trithorax-homolog protein 2) (TRX-homolog protein 2) (Protein SET DOMAIN GROUP 30) Length = 1193 Score = 27.7 bits (60), Expect = 7.5 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%) Frame = +3 Query: 144 DVCDECG-DVGY-SHLLLRCSNCNNAARHRYCLDEINFDLAVEWLCSDCIP 290 D C+ C D Y ++L L+C C H C ++ + WLC+ C P Sbjct: 589 DKCNVCHMDEEYENNLFLQCDKCRMMV-HTRCYGQLEPHNGILWLCNLCRP 638
>EGFR_DROME (P04412) Epidermal growth factor receptor precursor (EC 2.7.10.1)| (Egfr) (Gurken receptor) (Protein torpedo) (Drosophila relative of ERBB) Length = 1426 Score = 27.7 bits (60), Expect = 7.5 Identities = 15/57 (26%), Positives = 23/57 (40%) Frame = +3 Query: 132 REMDDVCDECGDVGYSHLLLRCSNCNNAARHRYCLDEINFDLAVEWLCSDCIPXHSE 302 R+ +C+ C + GY + CS C + R C E D + +C H E Sbjct: 738 RKCHPLCELCTNYGYHEQV--CSKCTHYKRREQCETECPADHYTDEEQRECFQRHPE 792
>VWF_CANFA (Q28295) Von Willebrand factor precursor (vWF)| Length = 2813 Score = 27.7 bits (60), Expect = 7.5 Identities = 17/58 (29%), Positives = 24/58 (41%) Frame = +3 Query: 135 EMDDVCDECGDVGYSHLLLRCSNCNNAARHRYCLDEINFDLAVEWLCSDCIPXHSEAI 308 E DVC C D+ S + LR + C+ CL + L C C+P E + Sbjct: 2446 EACDVCT-CTDLEDSVMGLRVAQCSQKPCEDNCLSGFTYVLHEGECCGRCLPSACEVV 2502
>LIN49_CAEEL (Q20318) Protein lin-49 (Abnormal cell lineage protein 49)| Length = 1042 Score = 27.7 bits (60), Expect = 7.5 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 2/35 (5%) Frame = +3 Query: 135 EMDDVCDEC--GDVGYSHLLLRCSNCNNAARHRYC 233 E+DDVC+ C GD + ++ C CN + H+ C Sbjct: 193 ELDDVCNICLDGDTSNCNQIVYCDRCNLSV-HQDC 226
>JAD1D_PANTR (Q5XUN4) Jumonji/ARID domain-containing protein 1D (SmcY protein)| Length = 1535 Score = 27.3 bits (59), Expect = 9.8 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 4/36 (11%) Frame = +3 Query: 150 CDECGD--VGYSHL--LLRCSNCNNAARHRYCLDEI 245 C +C D V SH+ L +CS+ R+RY LDE+ Sbjct: 711 CYDCPDGLVCLSHINDLCKCSSSRQYLRYRYTLDEL 746
>JAD1D_HUMAN (Q9BY66) Jumonji/ARID domain-containing protein 1D (SmcY protein)| (Histocompatibility Y antigen) (H-Y) Length = 1539 Score = 27.3 bits (59), Expect = 9.8 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 4/36 (11%) Frame = +3 Query: 150 CDECGD--VGYSHL--LLRCSNCNNAARHRYCLDEI 245 C +C D V SH+ L +CS+ R+RY LDE+ Sbjct: 711 CYDCPDGLVCLSHINDLCKCSSSRQYLRYRYTLDEL 746
>PHF7_RAT (Q6AXW4) PHD finger protein 7| Length = 380 Score = 27.3 bits (59), Expect = 9.8 Identities = 15/50 (30%), Positives = 24/50 (48%) Frame = +3 Query: 153 DECGDVGYSHLLLRCSNCNNAARHRYCLDEINFDLAVEWLCSDCIPXHSE 302 D D G L+L C+ C + HR C + +W C++C+P +E Sbjct: 259 DSFEDEGRWRLIL-CATCGSHGTHRDCSSLR--PNSKKWECNECLPASTE 305
>TRUA_PROAC (Q6A6S8) tRNA pseudouridine synthase A (EC 5.4.99.12) (tRNA-uridine| isomerase I) (tRNA pseudouridylate synthase I) Length = 279 Score = 27.3 bits (59), Expect = 9.8 Identities = 10/24 (41%), Positives = 14/24 (58%) Frame = +3 Query: 90 DDPLVREAEDLRRRREMDDVCDEC 161 D+ L + A R RR +D+CD C Sbjct: 252 DEDLAQRAAQARSRRSHNDICDTC 275
>JAD1C_MOUSE (P41230) Jumonji/ARID domain-containing protein 1C (SmcX protein)| (Xe169 protein) Length = 1554 Score = 27.3 bits (59), Expect = 9.8 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 4/36 (11%) Frame = +3 Query: 150 CDECGD--VGYSHL--LLRCSNCNNAARHRYCLDEI 245 C +C D V SH+ L +CS+ R+RY LDE+ Sbjct: 721 CYDCPDGLVCLSHINDLCKCSSSRQYLRYRYTLDEL 756
>JAD1C_HUMAN (P41229) Jumonji/ARID domain-containing protein 1C (SmcX protein)| (Xe169 protein) Length = 1560 Score = 27.3 bits (59), Expect = 9.8 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 4/36 (11%) Frame = +3 Query: 150 CDECGD--VGYSHL--LLRCSNCNNAARHRYCLDEI 245 C +C D V SH+ L +CS+ R+RY LDE+ Sbjct: 721 CYDCPDGLVCLSHINDLCKCSSSRQYLRYRYTLDEL 756 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 32,688,544 Number of Sequences: 219361 Number of extensions: 485770 Number of successful extensions: 1671 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 1627 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1671 length of database: 80,573,946 effective HSP length: 83 effective length of database: 62,366,983 effective search space used: 1496807592 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
