ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bastl18h11 |
|---|---|
| Clone Library Name | barley_pub |
>BGAL_ASPOF (P45582) Beta-galactosidase precursor (EC 3.2.1.23) (Lactase)| Length = 832 Score = 200 bits (508), Expect = 1e-51 Identities = 87/102 (85%), Positives = 95/102 (93%) Frame = +3 Query: 135 YDRKALVVNGRRRILLSGSIHYPRSVPEMWPDLIQKAKDGGLDVVQTYVFWNGHEPSPGQ 314 YD K++++NG+RRIL+SGSIHYPRS PEMWPDLIQKAKDGGLDV+QTYVFWNGHEPSPGQ Sbjct: 29 YDHKSVIINGQRRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGQ 88 Query: 315 YYFEGRYDLVHFIKLVKQAGLYVHLRTGPYVCAEWNFGGXPV 440 YYF GRYDLV F+KLVKQAGLY HLR GPYVCAEWNFGG PV Sbjct: 89 YYFGGRYDLVRFLKLVKQAGLYAHLRIGPYVCAEWNFGGFPV 130
>BGAL_MALDO (P48981) Beta-galactosidase precursor (EC 3.2.1.23) (Lactase) (Acid| beta-galactosidase) (Exo-(1-->4)-beta-D-galactanase) Length = 731 Score = 192 bits (488), Expect = 3e-49 Identities = 84/102 (82%), Positives = 94/102 (92%) Frame = +3 Query: 135 YDRKALVVNGRRRILLSGSIHYPRSVPEMWPDLIQKAKDGGLDVVQTYVFWNGHEPSPGQ 314 YD KA+++NG++RIL+SGSIHYPRS PEMWPDLIQKAKDGGLDV+QTYVFWNGHEPSPG Sbjct: 28 YDHKAIIINGQKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGN 87 Query: 315 YYFEGRYDLVHFIKLVKQAGLYVHLRTGPYVCAEWNFGGXPV 440 YYFE RYDLV FIKLV+Q GL+V+LR GPYVCAEWNFGG PV Sbjct: 88 YYFEERYDLVKFIKLVQQEGLFVNLRIGPYVCAEWNFGGFPV 129
>BGAL_LYCES (P48980) Beta-galactosidase precursor (EC 3.2.1.23) (Lactase) (Acid| beta-galactosidase) (Exo-(1-->4)-beta-D-galactanase) Length = 835 Score = 188 bits (477), Expect = 6e-48 Identities = 81/102 (79%), Positives = 93/102 (91%) Frame = +3 Query: 135 YDRKALVVNGRRRILLSGSIHYPRSVPEMWPDLIQKAKDGGLDVVQTYVFWNGHEPSPGQ 314 YD KA++VNG+R+IL+SGSIHYPRS PEMWPDLIQKAK+GG+DV+QTYVFWNGHEP G+ Sbjct: 26 YDHKAIIVNGQRKILISGSIHYPRSTPEMWPDLIQKAKEGGVDVIQTYVFWNGHEPEEGK 85 Query: 315 YYFEGRYDLVHFIKLVKQAGLYVHLRTGPYVCAEWNFGGXPV 440 YYFE RYDLV FIK+V++AGLYVHLR GPY CAEWNFGG PV Sbjct: 86 YYFEERYDLVKFIKVVQEAGLYVHLRIGPYACAEWNFGGFPV 127
>BGAL_DIACA (Q00662) Putative beta-galactosidase precursor (EC 3.2.1.23)| (Lactase) (SR12 protein) Length = 731 Score = 181 bits (459), Expect = 7e-46 Identities = 79/102 (77%), Positives = 90/102 (88%) Frame = +3 Query: 135 YDRKALVVNGRRRILLSGSIHYPRSVPEMWPDLIQKAKDGGLDVVQTYVFWNGHEPSPGQ 314 YD +A+ +N +RRILLSGSIHYPRS PEMWPD+I+KAKD LDV+QTYVFWNGHEPS G+ Sbjct: 33 YDYRAIKINDQRRILLSGSIHYPRSTPEMWPDIIEKAKDSQLDVIQTYVFWNGHEPSEGK 92 Query: 315 YYFEGRYDLVHFIKLVKQAGLYVHLRTGPYVCAEWNFGGXPV 440 YYFEGRYDLV FIKL+ QAGL+VHLR GP+ CAEWNFGG PV Sbjct: 93 YYFEGRYDLVKFIKLIHQAGLFVHLRIGPFACAEWNFGGFPV 134
>BGAL_BRAOL (P49676) Beta-galactosidase precursor (EC 3.2.1.23) (Lactase)| Length = 828 Score = 159 bits (402), Expect = 3e-39 Identities = 70/102 (68%), Positives = 82/102 (80%) Frame = +3 Query: 135 YDRKALVVNGRRRILLSGSIHYPRSVPEMWPDLIQKAKDGGLDVVQTYVFWNGHEPSPGQ 314 +D +A+ ++G+RRILLSGSIHYPRS +MWPDLI KAKDGGLD ++TYVFWN HEPS Q Sbjct: 29 HDERAITIDGQRRILLSGSIHYPRSTSDMWPDLISKAKDGGLDTIETYVFWNAHEPSRRQ 88 Query: 315 YYFEGRYDLVHFIKLVKQAGLYVHLRTGPYVCAEWNFGGXPV 440 Y F G DLV FIK ++ AGLY LR GPYVCAEWN+GG PV Sbjct: 89 YDFSGNLDLVRFIKTIQSAGLYSVLRIGPYVCAEWNYGGFPV 130
>BGAL_CANFA (Q9TRY9) Beta-galactosidase precursor (EC 3.2.1.23) (Lactase) (Acid| beta-galactosidase) Length = 668 Score = 107 bits (268), Expect = 1e-23 Identities = 50/101 (49%), Positives = 62/101 (61%) Frame = +3 Query: 135 YDRKALVVNGRRRILLSGSIHYPRSVPEMWPDLIQKAKDGGLDVVQTYVFWNGHEPSPGQ 314 Y + +G+ +SGSIHY R W D + K K GL+ +QTYV WN HEP PGQ Sbjct: 37 YSHNRFLKDGQPFRYISGSIHYSRVPRFYWKDRLLKMKMAGLNAIQTYVPWNFHEPQPGQ 96 Query: 315 YYFEGRYDLVHFIKLVKQAGLYVHLRTGPYVCAEWNFGGXP 437 Y F G D+ +FIKL + GL V LR GPY+CAEW+ GG P Sbjct: 97 YQFSGEQDVEYFIKLAHELGLLVILRPGPYICAEWDMGGLP 137
>BGAL_FELCA (O19015) Beta-galactosidase precursor (EC 3.2.1.23) (Lactase) (Acid| beta-galactosidase) Length = 669 Score = 106 bits (265), Expect = 2e-23 Identities = 49/101 (48%), Positives = 63/101 (62%) Frame = +3 Query: 135 YDRKALVVNGRRRILLSGSIHYPRSVPEMWPDLIQKAKDGGLDVVQTYVFWNGHEPSPGQ 314 Y + +G+ +SGSIHY R W D + K K GL+ +QTYV WN HEP PGQ Sbjct: 37 YGHNRFLKDGQPFRYISGSIHYFRVPRFYWKDRLLKMKMAGLNAIQTYVPWNFHEPQPGQ 96 Query: 315 YYFEGRYDLVHFIKLVKQAGLYVHLRTGPYVCAEWNFGGXP 437 Y F G +D+ +F+KL + GL V LR GPY+CAEW+ GG P Sbjct: 97 YQFSGEHDVEYFLKLAHELGLLVILRPGPYICAEWDMGGLP 137
>BGAL_MOUSE (P23780) Beta-galactosidase precursor (EC 3.2.1.23) (Lactase) (Acid| beta-galactosidase) Length = 647 Score = 105 bits (261), Expect = 7e-23 Identities = 50/101 (49%), Positives = 62/101 (61%) Frame = +3 Query: 135 YDRKALVVNGRRRILLSGSIHYPRSVPEMWPDLIQKAKDGGLDVVQTYVFWNGHEPSPGQ 314 Y R + +G+ +SGSIHY R W D + K K GL+ +Q YV WN HEP PGQ Sbjct: 37 YSRDRFLKDGQPFRYISGSIHYFRIPRFYWEDRLLKMKMAGLNAIQMYVPWNFHEPQPGQ 96 Query: 315 YYFEGRYDLVHFIKLVKQAGLYVHLRTGPYVCAEWNFGGXP 437 Y F G D+ HFI+L + GL V LR GPY+CAEW+ GG P Sbjct: 97 YEFSGDRDVEHFIQLAHELGLLVILRPGPYICAEWDMGGLP 137
>BGAL_HUMAN (P16278) Beta-galactosidase precursor (EC 3.2.1.23) (Lactase) (Acid| beta-galactosidase) Length = 677 Score = 103 bits (258), Expect = 1e-22 Identities = 48/101 (47%), Positives = 63/101 (62%) Frame = +3 Query: 135 YDRKALVVNGRRRILLSGSIHYPRSVPEMWPDLIQKAKDGGLDVVQTYVFWNGHEPSPGQ 314 Y R + + +G+ +SGSIHY R W D + K K GL+ +QTYV WN HEP PGQ Sbjct: 36 YSRDSFLKDGQPFRYISGSIHYSRVPRFYWKDRLLKMKMAGLNAIQTYVPWNFHEPWPGQ 95 Query: 315 YYFEGRYDLVHFIKLVKQAGLYVHLRTGPYVCAEWNFGGXP 437 Y F +D+ +F++L + GL V LR GPY+CAEW GG P Sbjct: 96 YQFSEDHDVEYFLRLAHELGLLVILRPGPYICAEWEMGGLP 136
>BGAL_MACFA (Q60HF6) Beta-galactosidase precursor (EC 3.2.1.23) (Lactase) (Acid| beta-galactosidase) Length = 682 Score = 101 bits (252), Expect = 7e-22 Identities = 47/101 (46%), Positives = 62/101 (61%) Frame = +3 Query: 135 YDRKALVVNGRRRILLSGSIHYPRSVPEMWPDLIQKAKDGGLDVVQTYVFWNGHEPSPGQ 314 Y + + +G+ +SGSIHY R W D + K K GL+ +QTYV WN HEP PGQ Sbjct: 36 YSQDRFLKDGQPFRYISGSIHYSRVPRFYWKDRLLKMKMAGLNTIQTYVPWNFHEPWPGQ 95 Query: 315 YYFEGRYDLVHFIKLVKQAGLYVHLRTGPYVCAEWNFGGXP 437 Y F +D+ +F++L + GL V LR GPY+CAEW GG P Sbjct: 96 YQFSEDHDVEYFLRLAHELGLLVILRPGPYICAEWEMGGLP 136
>BGAL_XANMN (P48982) Beta-galactosidase precursor (EC 3.2.1.23) (Lactase)| Length = 598 Score = 95.1 bits (235), Expect = 7e-20 Identities = 47/95 (49%), Positives = 58/95 (61%) Frame = +3 Query: 153 VVNGRRRILLSGSIHYPRSVPEMWPDLIQKAKDGGLDVVQTYVFWNGHEPSPGQYYFEGR 332 V +G+ LLSG+IH+ R W D +QKA+ GL+ V+TYVFWN EP GQ+ F G Sbjct: 38 VRDGKPYQLLSGAIHFQRIPRAYWKDRLQKARALGLNTVETYVFWNLVEPQQGQFDFSGN 97 Query: 333 YDLVHFIKLVKQAGLYVHLRTGPYVCAEWNFGGXP 437 D+ F+K GL V LR GPY CAEW GG P Sbjct: 98 NDVAAFVKEAAAQGLNVILRPGPYACAEWEAGGYP 132
>BGAL_ASPNG (P29853) Beta-galactosidase precursor (EC 3.2.1.23) (Lactase)| (Tilactase) (Lactase-N) Length = 1006 Score = 74.7 bits (182), Expect = 9e-14 Identities = 40/102 (39%), Positives = 57/102 (55%), Gaps = 1/102 (0%) Frame = +3 Query: 135 YDRKALVVNGRRRILLSGSIH-YPRSVPEMWPDLIQKAKDGGLDVVQTYVFWNGHEPSPG 311 +D K+L +NG R ++ SG H + V E+ D+ QK K G + V YV W E PG Sbjct: 48 WDDKSLFINGERIMIFSGEFHPFRLPVKELQLDIFQKVKALGFNCVSFYVDWALVEGKPG 107 Query: 312 QYYFEGRYDLVHFIKLVKQAGLYVHLRTGPYVCAEWNFGGXP 437 +Y +G +DL F +AG+Y+ R GPY+ AE + GG P Sbjct: 108 EYRADGIFDLEPFFDAASEAGIYLLARPGPYINAESSGGGFP 149
>BGAM_HUMAN (P16279) Beta-galactosidase-related protein precursor| (Beta-galactosidase-like protein) (S-Gal) (Elastin-binding protein) (EBP) Length = 546 Score = 36.6 bits (83), Expect = 0.028 Identities = 18/47 (38%), Positives = 26/47 (55%) Frame = +3 Query: 135 YDRKALVVNGRRRILLSGSIHYPRSVPEMWPDLIQKAKDGGLDVVQT 275 Y R + + +G+ +SGSIHY R W D + K K GL+ +QT Sbjct: 36 YSRDSFLKDGQPFRYISGSIHYSRVPRFYWKDRLLKMKMAGLNAIQT 82
>RSP3_CAEEL (Q9NEW6) Probable splicing factor, arginine/serine-rich 3 (CeSF2)| (CeSF2/ASF) Length = 258 Score = 30.8 bits (68), Expect = 1.6 Identities = 13/30 (43%), Positives = 19/30 (63%) Frame = -3 Query: 330 SPRNSTGQGRARGHSRTRTSAPRPGRRPWP 241 SPR S + R+R SR+R+++ P R P P Sbjct: 228 SPRRSRSRSRSRSRSRSRSASRSPSRSPSP 257
>DPYL4_HUMAN (O14531) Dihydropyrimidinase-related protein 4 (DRP-4) (Collapsin| response mediator protein 3) (CRMP-3) (UNC33-like phosphoprotein 4) (ULIP4 protein) Length = 572 Score = 30.8 bits (68), Expect = 1.6 Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Frame = -1 Query: 392 AEVHVESGLLHQLDEVH*IIPPLEIVLARGGLVAIPEHVRLH-HVQAAVLGL 240 A+VHVE GL+ Q+ E + I+P + GL+ +P V +H +Q VLG+ Sbjct: 33 ADVHVEDGLIKQIGE-NLIVPGGIKTIDAHGLMVLPGGVDVHTRLQMPVLGM 83
>ROBO3_HUMAN (Q96MS0) Roundabout homolog 3 precursor (Roundabout-like protein 3)| Length = 1386 Score = 30.4 bits (67), Expect = 2.0 Identities = 12/28 (42%), Positives = 20/28 (71%) Frame = -3 Query: 333 TSPRNSTGQGRARGHSRTRTSAPRPGRR 250 +S R S G GR+R S++R+ + RPG++ Sbjct: 1353 SSSRGSRGPGRSRSRSQSRSQSQRPGQK 1380
>VE2_HPV09 (P36780) Regulatory protein E2| Length = 461 Score = 30.0 bits (66), Expect = 2.7 Identities = 21/67 (31%), Positives = 25/67 (37%), Gaps = 15/67 (22%) Frame = +3 Query: 225 PDLIQKAKDGGLDVVQTYVFWN---------------GHEPSPGQYYFEGRYDLVHFIKL 359 P I+ DG D V +Y WN GH G YYFEG ++I Sbjct: 114 PQNIEVVYDGDPDNVMSYTIWNFIYYQTVNDTWEKVQGHVDYFGAYYFEGTVK-TYYINF 172 Query: 360 VKQAGLY 380 K A Y Sbjct: 173 DKDAARY 179
>TBP_MESAU (P53360) TATA-box-binding protein (TATA-box factor) (TATA-binding| factor) (TATA sequence-binding protein) (Transcription initiation factor TFIID TBP subunit) Length = 318 Score = 29.3 bits (64), Expect = 4.5 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%) Frame = -3 Query: 330 SPRNSTGQGRARGHSRTRTSAPRPGRRP-WPSVSDPAT 220 S + ++GQ HS+T T+AP PG P +PS P T Sbjct: 89 STQGASGQTPQLFHSQTLTTAPLPGTTPLYPSPMTPMT 126
>AMOT_MOUSE (Q8VHG2) Angiomotin (Fragment)| Length = 926 Score = 29.3 bits (64), Expect = 4.5 Identities = 20/52 (38%), Positives = 28/52 (53%) Frame = +1 Query: 277 TCSGMATSPPLASTISRGGMI*CTSSSW*SRPDSTCTSALAPTSAPSGTSVA 432 T S + S PL S S+ G C++ + P+ST T+A+ P SAP VA Sbjct: 619 TPSPVPPSTPLLSAHSKTGSRDCSTQTE-RGPESTKTAAVTPISAPMAGPVA 669
>VPHE_NPVAC (P24728) Polyhedral envelope protein (PE) (Polyhedral calyx| protein) Length = 252 Score = 29.3 bits (64), Expect = 4.5 Identities = 14/29 (48%), Positives = 20/29 (68%) Frame = -3 Query: 336 HTSPRNSTGQGRARGHSRTRTSAPRPGRR 250 H PR+ + R+R SR+R+S+PR GRR Sbjct: 125 HCRPRS---RSRSRSRSRSRSSSPRRGRR 150
>TBP_HUMAN (P20226) TATA-box-binding protein (TATA-box factor) (TATA-binding| factor) (TATA sequence-binding protein) (Transcription initiation factor TFIID TBP subunit) Length = 339 Score = 28.9 bits (63), Expect = 5.9 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%) Frame = -3 Query: 324 RNSTGQGRARGHSRTRTSAPRPGRRP-WPSVSDPAT 220 + ++GQ HS+T T+AP PG P +PS P T Sbjct: 112 QGTSGQAPQLFHSQTLTTAPLPGTTPLYPSPMTPMT 147
>REX_BACHD (Q9Z9P6) Redox-sensing transcriptional repressor rex| Length = 211 Score = 28.9 bits (63), Expect = 5.9 Identities = 9/16 (56%), Positives = 14/16 (87%) Frame = -1 Query: 296 VAIPEHVRLHHVQAAV 249 +A+PEHVR+HH+ +V Sbjct: 182 IAVPEHVRVHHIDLSV 197
>EBNA2_EBVG (Q3KSV2) Epstein-Barr nuclear antigen 2 (EBV nuclear antigen 2)| (EBNA-2) (EBNA2) Length = 451 Score = 28.5 bits (62), Expect = 7.7 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%) Frame = -3 Query: 312 GQGRARGHSRTRTSAPRPGR--RPWPSVSDPA 223 G+GR RG ++R +PG RP P+ S P+ Sbjct: 314 GRGRGRGRGKSRDKQRKPGGPWRPEPNTSSPS 345 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,874,156 Number of Sequences: 219361 Number of extensions: 1148466 Number of successful extensions: 4180 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 3941 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4179 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2628831825 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
