ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl18h07 |
|---|---|
| Clone Library Name | barley_pub |
>PP1R8_MOUSE (Q8R3G1) Nuclear inhibitor of protein phosphatase 1 (NIPP-1)| (Protein phosphatase 1 regulatory inhibitor subunit 8) Length = 351 Score = 42.7 bits (99), Expect = 2e-04 Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 1/46 (2%) Frame = +2 Query: 269 LFGRHPD-CHVLIDHPSVSRRHLEVRCKRRQRRITVTDLSSVHGTW 403 LFGR+PD C IDH S SR H + + +R+ + DL+S HGT+ Sbjct: 50 LFGRNPDLCDFTIDHQSCSRVHAALVYHKHLKRVFLIDLNSTHGTF 95
>PP1R8_HUMAN (Q12972) Nuclear inhibitor of protein phosphatase 1 (NIPP-1)| (Protein phosphatase 1 regulatory inhibitor subunit 8) [Includes: Activator of RNA decay (EC 3.1.4.-) (ARD-1)] Length = 351 Score = 42.7 bits (99), Expect = 2e-04 Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 1/46 (2%) Frame = +2 Query: 269 LFGRHPD-CHVLIDHPSVSRRHLEVRCKRRQRRITVTDLSSVHGTW 403 LFGR+PD C IDH S SR H + + +R+ + DL+S HGT+ Sbjct: 50 LFGRNPDLCDFTIDHQSCSRVHAALVYHKHLKRVFLIDLNSTHGTF 95
>PP1R8_BOVIN (Q28147) Nuclear inhibitor of protein phosphatase 1 (NIPP-1)| (Protein phosphatase 1, regulatory inhibitor subunit 8) Length = 351 Score = 42.7 bits (99), Expect = 2e-04 Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 1/46 (2%) Frame = +2 Query: 269 LFGRHPD-CHVLIDHPSVSRRHLEVRCKRRQRRITVTDLSSVHGTW 403 LFGR+PD C IDH S SR H + + +R+ + DL+S HGT+ Sbjct: 50 LFGRNPDLCDFTIDHQSCSRVHAALVYHKHLKRVFLIDLNSTHGTF 95
>Y1858_MYCBO (P64898) Hypothetical protein Mb1858| Length = 162 Score = 40.0 bits (92), Expect = 0.001 Identities = 18/43 (41%), Positives = 27/43 (62%) Frame = +2 Query: 275 GRHPDCHVLIDHPSVSRRHLEVRCKRRQRRITVTDLSSVHGTW 403 GRHPD + +D +VSRRH E R + + V D+ S++GT+ Sbjct: 80 GRHPDSDIFLDDVTVSRRHAEFRLENNE--FNVVDVGSLNGTY 120
>Y1827_MYCTU (P64897) Hypothetical protein Rv1827/MT1875| Length = 162 Score = 40.0 bits (92), Expect = 0.001 Identities = 18/43 (41%), Positives = 27/43 (62%) Frame = +2 Query: 275 GRHPDCHVLIDHPSVSRRHLEVRCKRRQRRITVTDLSSVHGTW 403 GRHPD + +D +VSRRH E R + + V D+ S++GT+ Sbjct: 80 GRHPDSDIFLDDVTVSRRHAEFRLENNE--FNVVDVGSLNGTY 120
>MDC1_PANTR (Q7YR40) Mediator of DNA damage checkpoint protein 1| Length = 2171 Score = 35.8 bits (81), Expect = 0.025 Identities = 15/42 (35%), Positives = 24/42 (57%) Frame = +2 Query: 275 GRHPDCHVLIDHPSVSRRHLEVRCKRRQRRITVTDLSSVHGT 400 GR PDC V + PS+S++H E+ + + D S++GT Sbjct: 57 GRMPDCSVALPFPSISKQHAEIEILAWDKAPILRDCGSLNGT 98
>MDC1_HUMAN (Q14676) Mediator of DNA damage checkpoint protein 1 (Nuclear| factor with BRCT domains 1) Length = 2089 Score = 35.8 bits (81), Expect = 0.025 Identities = 15/42 (35%), Positives = 24/42 (57%) Frame = +2 Query: 275 GRHPDCHVLIDHPSVSRRHLEVRCKRRQRRITVTDLSSVHGT 400 GR PDC V + PS+S++H E+ + + D S++GT Sbjct: 57 GRMPDCSVALPFPSISKQHAEIEILAWDKAPILRDCGSLNGT 98
>MDC1_MACMU (Q5TM68) Mediator of DNA damage checkpoint protein 1| Length = 2173 Score = 35.8 bits (81), Expect = 0.025 Identities = 15/42 (35%), Positives = 24/42 (57%) Frame = +2 Query: 275 GRHPDCHVLIDHPSVSRRHLEVRCKRRQRRITVTDLSSVHGT 400 GR PDC V + PS+S++H E+ + + D S++GT Sbjct: 57 GRMPDCSVALPFPSISKQHAEIEILAWDKAPILRDCGSLNGT 98
>NADAP_HUMAN (Q9BWU0) Kanadaptin (Kidney anion exchanger adapter protein)| (Solute carrier family 4 anion exchanger member 1 adapter protein) (Lung cancer oncogene 3 protein) Length = 796 Score = 35.4 bits (80), Expect = 0.033 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 9/54 (16%) Frame = +2 Query: 269 LFGRHPDCHVLIDHPSVSRRHLEVR---------CKRRQRRITVTDLSSVHGTW 403 LFGR C V ++HPSVSR H ++ C + DL S HGT+ Sbjct: 190 LFGRLSGCDVCLEHPSVSRYHAVLQHRASGPDGECDSNGPGFYLYDLGSTHGTF 243
>MDC1_RAT (Q5U2M8) Mediator of DNA damage checkpoint protein 1| Length = 1279 Score = 34.7 bits (78), Expect = 0.056 Identities = 18/60 (30%), Positives = 31/60 (51%) Frame = +2 Query: 221 GPDRDRVEEEAEDPPVLFGRHPDCHVLIDHPSVSRRHLEVRCKRRQRRITVTDLSSVHGT 400 GP+RD ++ + GR PDC V + PS+S++H + + + D S++GT Sbjct: 42 GPERDFPLYLGKN---VVGRSPDCSVALPFPSISKQHAVIEISAWNKAPILQDCGSLNGT 98
>MDC1_MOUSE (Q5PSV9) Mediator of DNA damage checkpoint protein 1| Length = 1707 Score = 34.7 bits (78), Expect = 0.056 Identities = 18/60 (30%), Positives = 31/60 (51%) Frame = +2 Query: 221 GPDRDRVEEEAEDPPVLFGRHPDCHVLIDHPSVSRRHLEVRCKRRQRRITVTDLSSVHGT 400 GP+RD ++ + GR PDC V + PS+S++H + + + D S++GT Sbjct: 42 GPERDFPLYLGKN---VVGRSPDCSVALPFPSISKQHAVIEISAWNKAPILQDCGSLNGT 98
>ABA2_LYCES (P93236) Zeaxanthin epoxidase, chloroplast precursor (EC| 1.14.13.90) Length = 669 Score = 32.7 bits (73), Expect = 0.21 Identities = 16/40 (40%), Positives = 20/40 (50%) Frame = +2 Query: 284 PDCHVLIDHPSVSRRHLEVRCKRRQRRITVTDLSSVHGTW 403 P +++ P VS H + CK VTDL S HGTW Sbjct: 574 PGKSIVLPLPQVSEMHARISCK--DGAFFVTDLRSEHGTW 611
>CDS1_SCHPO (Q09170) Serine/threonine-protein kinase cds1 (EC 2.7.11.1)| (Checkpoint kinase cds1) Length = 460 Score = 30.0 bits (66), Expect = 1.4 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = +2 Query: 272 FGRHPDCHVLIDHPSVSRRHLEV 340 FGRH C V+++ P VS H E+ Sbjct: 62 FGRHKSCEVVLNGPRVSNFHFEI 84
>YOT2_CAEEL (P34648) Hypothetical protein ZK632.2| Length = 710 Score = 29.6 bits (65), Expect = 1.8 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 6/51 (11%) Frame = +2 Query: 266 VLFGR-HPDCHVLIDHPSVSRRHLEVRCKRRQRRIT-----VTDLSSVHGT 400 V+ GR P C +L++HPS+SR H ++ + T + +L S HG+ Sbjct: 108 VVIGRIKPGCDLLMEHPSISRYHCILQYGNDKMSKTGKGWHIFELGSTHGS 158
>TULP1_MOUSE (Q9Z273) Tubby-related protein 1 (Tubby-like protein 1)| Length = 543 Score = 29.3 bits (64), Expect = 2.3 Identities = 15/41 (36%), Positives = 21/41 (51%) Frame = +2 Query: 134 PIAAFAVAKGGVVLKHILLNGPPTEAARRGPDRDRVEEEAE 256 P A F V +GG K + GPP +G + ++ EEE E Sbjct: 215 PAAMFLVGEGGAAEKGVKKKGPP-----KGSEEEKKEEEEE 250
>MDC1_PIG (Q767L8) Mediator of DNA damage checkpoint protein 1| Length = 2042 Score = 28.9 bits (63), Expect = 3.1 Identities = 12/42 (28%), Positives = 22/42 (52%) Frame = +2 Query: 275 GRHPDCHVLIDHPSVSRRHLEVRCKRRQRRITVTDLSSVHGT 400 GR P+C V + S+S++H + + + D S++GT Sbjct: 57 GRMPECSVALPFSSISKQHAVIEILAWNKAPVLRDCGSLNGT 98
>ABA2_NICPL (Q40412) Zeaxanthin epoxidase, chloroplast precursor (EC| 1.14.13.90) Length = 663 Score = 28.9 bits (63), Expect = 3.1 Identities = 17/40 (42%), Positives = 19/40 (47%) Frame = +2 Query: 284 PDCHVLIDHPSVSRRHLEVRCKRRQRRITVTDLSSVHGTW 403 P V+I P VS H + K VTDL S HGTW Sbjct: 568 PGKSVVIPLPQVSEMHARISYKGGA--FFVTDLRSEHGTW 605
>ASPM_MACMU (P62292) Abnormal spindle-like microcephaly-associated protein| homolog Length = 3479 Score = 28.1 bits (61), Expect = 5.2 Identities = 18/32 (56%), Positives = 18/32 (56%), Gaps = 4/32 (12%) Frame = +2 Query: 200 PTE----AARRGPDRDRVEEEAEDPPVLFGRH 283 PTE AA RGP EEEA PPVLF H Sbjct: 15 PTERRPPAALRGP---ATEEEASSPPVLFLSH 43
>ABA2_PRUAR (O81360) Zeaxanthin epoxidase, chloroplast precursor (EC| 1.14.13.90) (PA-ZE) Length = 661 Score = 27.7 bits (60), Expect = 6.8 Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 5/55 (9%) Frame = +2 Query: 254 EDPPVLFGRHPD-----CHVLIDHPSVSRRHLEVRCKRRQRRITVTDLSSVHGTW 403 E P + G P + I P VS H + K +TDL S HGTW Sbjct: 554 EKNPCIIGSAPHGDVSGISIAIPKPQVSEMHARISYK--DGAFYLTDLRSEHGTW 606
>SYA_HALMA (Q5UZE6) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)| (AlaRS) Length = 927 Score = 27.7 bits (60), Expect = 6.8 Identities = 18/52 (34%), Positives = 23/52 (44%) Frame = +2 Query: 110 DVEAGAGSPIAAFAVAKGGVVLKHILLNGPPTEAARRGPDRDRVEEEAEDPP 265 DV+AG A V GG GPP A GPD D +++ +D P Sbjct: 875 DVDAGEVVGELAGRVGGGG--------GGPPDFAQGGGPDADALDDALDDAP 918
>GLYG1_SOYBN (P04776) Glycinin G1 precursor [Contains: Glycinin A1a subunit;| Glycinin Bx subunit] Length = 495 Score = 27.3 bits (59), Expect = 8.9 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 1/69 (1%) Frame = +2 Query: 128 GSPIAAFAVAKGGV-VLKHILLNGPPTEAARRGPDRDRVEEEAEDPPVLFGRHPDCHVLI 304 G A KGG+ V+K PPT+ ++ P + EEE ++ P G+ C Sbjct: 249 GEDKGAIVTVKGGLSVIK------PPTDEQQQRPQEEE-EEEEDEKPQCKGKDKHCQRPR 301 Query: 305 DHPSVSRRH 331 S SRR+ Sbjct: 302 GSQSKSRRN 310
>Y1895_SYNY3 (P74101) Hypothetical protein sll1895| Length = 696 Score = 27.3 bits (59), Expect = 8.9 Identities = 10/19 (52%), Positives = 13/19 (68%) Frame = +2 Query: 275 GRHPDCHVLIDHPSVSRRH 331 GRHP ++I P +SRRH Sbjct: 26 GRHPSNTIVIPSPQISRRH 44
>THII_OCEIH (Q8EPB3) Probable thiamine biosynthesis protein thiI| Length = 400 Score = 27.3 bits (59), Expect = 8.9 Identities = 13/35 (37%), Positives = 18/35 (51%) Frame = +2 Query: 113 VEAGAGSPIAAFAVAKGGVVLKHILLNGPPTEAAR 217 + G SP+A F K GV L+ I + PP + R Sbjct: 183 LSGGIDSPVAGFLAMKRGVQLEAIHFHSPPFTSER 217 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 33,313,189 Number of Sequences: 219361 Number of extensions: 437745 Number of successful extensions: 1610 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 1586 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1607 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 1359926328 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
