ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl18h06 |
|---|---|
| Clone Library Name | barley_pub |
>Y560_PYRAB (Q9V168) UPF0027 protein PYRAB05600 [Contains: Pab hyp2 intein (EC| 3.1.-.-)] Length = 916 Score = 30.0 bits (66), Expect = 1.5 Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 2/44 (4%) Frame = -1 Query: 130 EKGS-SIGWNQPAFGG-ERFSGGAQTDGFSSELGPRSCLTSYGK 5 EKG + W+ P G R G A DG+ E+G R LT YGK Sbjct: 229 EKGLVPLRWDDPRIGTIARILGFAFGDGYLGEMGGRLTLTFYGK 272
>PDLI5_RAT (Q62920) PDZ and LIM domain protein 5 (Enigma homolog) (Enigma-like| PDZ and LIM domains protein) Length = 591 Score = 30.0 bits (66), Expect = 1.5 Identities = 18/58 (31%), Positives = 23/58 (39%) Frame = -1 Query: 205 ENQPTKKKNDNNEPXXXXXXQMSFGEKGSSIGWNQPAFGGERFSGGAQTDGFSSELGP 32 EN KK N EP +S E S G N+P G R + + G +S P Sbjct: 299 ENDNAKKANSTPEPSQQSASPLSAAESLESPGSNRPVVAGLRSAAAFKPVGSTSVKSP 356
>BOC_HUMAN (Q9BWV1) Brother of CDO precursor (Protein BOC)| Length = 1114 Score = 30.0 bits (66), Expect = 1.5 Identities = 14/35 (40%), Positives = 18/35 (51%) Frame = +3 Query: 30 RGPSSELNPSVWAPPLNLSPPKAG*FQPIEEPFSP 134 R P S + +VW PP + PP P+EE SP Sbjct: 1035 RAPDSPVLEAVWDPPFHSGPPCCLGLVPVEEVDSP 1069
>HEATR_CAEEL (Q23495) Hypothetical protein ZK430.1 in chromosome II| Length = 1650 Score = 28.9 bits (63), Expect = 3.4 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%) Frame = -1 Query: 136 FGEKGSSIGWNQPAFGGER-FSGGAQTDGFSSELG 35 FG+ + NQP+ F GG+QT GF S+ G Sbjct: 1257 FGDPSELLALNQPSSSTTAAFQGGSQTSGFGSKTG 1291
>SM34_LYTPI (Q05904) 34 kDa spicule matrix protein precursor (LSM34)| Length = 335 Score = 28.5 bits (62), Expect = 4.4 Identities = 12/32 (37%), Positives = 16/32 (50%) Frame = -1 Query: 136 FGEKGSSIGWNQPAFGGERFSGGAQTDGFSSE 41 FG + G QP FGG++ G Q GF + Sbjct: 243 FGGRQPGFGGQQPGFGGQQPGFGGQQPGFGGQ 274 Score = 28.5 bits (62), Expect = 4.4 Identities = 12/32 (37%), Positives = 16/32 (50%) Frame = -1 Query: 136 FGEKGSSIGWNQPAFGGERFSGGAQTDGFSSE 41 FG + G QP FGG++ G Q GF + Sbjct: 236 FGGRQPGFGGRQPGFGGQQPGFGGQQPGFGGQ 267 Score = 28.1 bits (61), Expect = 5.8 Identities = 12/32 (37%), Positives = 16/32 (50%) Frame = -1 Query: 136 FGEKGSSIGWNQPAFGGERFSGGAQTDGFSSE 41 FG + G QP FGG++ G Q GF + Sbjct: 264 FGGQQPGFGGQQPGFGGQQPGFGGQQPGFGGQ 295 Score = 28.1 bits (61), Expect = 5.8 Identities = 12/32 (37%), Positives = 16/32 (50%) Frame = -1 Query: 136 FGEKGSSIGWNQPAFGGERFSGGAQTDGFSSE 41 FG + G QP FGG++ G Q GF + Sbjct: 257 FGGQQPGFGGQQPGFGGQQPGFGGQQPGFGGQ 288 Score = 28.1 bits (61), Expect = 5.8 Identities = 12/32 (37%), Positives = 16/32 (50%) Frame = -1 Query: 136 FGEKGSSIGWNQPAFGGERFSGGAQTDGFSSE 41 FG + G QP FGG++ G Q GF + Sbjct: 250 FGGQQPGFGGQQPGFGGQQPGFGGQQPGFGGQ 281 Score = 27.7 bits (60), Expect = 7.5 Identities = 14/36 (38%), Positives = 18/36 (50%) Frame = -1 Query: 136 FGEKGSSIGWNQPAFGGERFSGGAQTDGFSSELGPR 29 FG + G QP FGG++ G Q GF GP+ Sbjct: 271 FGGQQPGFGGQQPGFGGQQPGFGGQQPGFGG--GPQ 304
>CAPU_DROME (Q24120) Protein cappuccino| Length = 1059 Score = 28.1 bits (61), Expect = 5.8 Identities = 13/33 (39%), Positives = 17/33 (51%) Frame = +2 Query: 227 PPGVMAPPRRRTAAEFQGNGGLMPPSVQVFASP 325 PPG + P A +G GG+ PP + ASP Sbjct: 527 PPGSGSAPPPPPPAPIEGGGGIPPPPPPMSASP 559
>UROK_PIG (P04185) Urokinase-type plasminogen activator precursor (EC| 3.4.21.73) (uPA) (U-plasminogen activator) [Contains: Urokinase-type plasminogen activator chain A; Urokinase-type plasminogen activator chain B] Length = 442 Score = 28.1 bits (61), Expect = 5.8 Identities = 14/22 (63%), Positives = 15/22 (68%) Frame = -2 Query: 324 GEANTCTDGGIRPPFPWNSAAV 259 G+ANT T G RP PWNSA V Sbjct: 82 GKANTNTGG--RPCLPWNSATV 101
>AMHR2_HUMAN (Q16671) Anti-Muellerian hormone type-2 receptor precursor (EC| 2.7.11.30) (Anti-Muellerian hormone type II receptor) (AMH type II receptor) (MIS type II receptor) (MISRII) (MRII) Length = 573 Score = 27.7 bits (60), Expect = 7.5 Identities = 12/23 (52%), Positives = 14/23 (60%) Frame = +2 Query: 218 ALIPPGVMAPPRRRTAAEFQGNG 286 AL+P V APP RRT F+ G Sbjct: 9 ALLPTAVEAPPNRRTCVFFEAPG 31
>RM03_CAEEL (P49404) Putative mitochondrial 39S ribosomal protein L3| Length = 403 Score = 27.3 bits (59), Expect = 9.8 Identities = 11/27 (40%), Positives = 15/27 (55%) Frame = +3 Query: 18 VKQLRGPSSELNPSVWAPPLNLSPPKA 98 + Q RG L P+ W PP+ S PK+ Sbjct: 29 ISQQRGRRRTLTPAPWLPPVKESVPKS 55
>PGK_THET2 (P62420) Phosphoglycerate kinase (EC 2.7.2.3)| Length = 390 Score = 27.3 bits (59), Expect = 9.8 Identities = 13/35 (37%), Positives = 17/35 (48%) Frame = -2 Query: 285 PFPWNSAAVRRRGGAMTPGGIKAFSSVRTSPLKRK 181 PFP S RR A+ PG + +VR P + K Sbjct: 88 PFPPGSEEARREAEALRPGEVLLLENVRFEPGEEK 122
>PGK_THET8 (P09403) Phosphoglycerate kinase (EC 2.7.2.3)| Length = 389 Score = 27.3 bits (59), Expect = 9.8 Identities = 13/35 (37%), Positives = 17/35 (48%) Frame = -2 Query: 285 PFPWNSAAVRRRGGAMTPGGIKAFSSVRTSPLKRK 181 PFP S RR A+ PG + +VR P + K Sbjct: 87 PFPPGSEEARREAEALRPGEVLLLENVRFEPGEEK 121
>TIF1B_MOUSE (Q62318) Transcription intermediary factor 1-beta (TIF1-beta)| (Tripartite motif protein 28) (KRAB-A-interacting protein) (KRIP-1) Length = 834 Score = 27.3 bits (59), Expect = 9.8 Identities = 13/27 (48%), Positives = 14/27 (51%) Frame = +2 Query: 230 PGVMAPPRRRTAAEFQGNGGLMPPSVQ 310 PG MAPPR QG+G P VQ Sbjct: 421 PGPMAPPRAPGPLSKQGSGSSQPMEVQ 447 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 41,339,774 Number of Sequences: 219361 Number of extensions: 696244 Number of successful extensions: 2129 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 1970 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2126 length of database: 80,573,946 effective HSP length: 83 effective length of database: 62,366,983 effective search space used: 1496807592 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
