ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl18h06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_196176.1| Oryza sativa (japonica cultivar-group) putative... 40 4.3
2gb|AC135557.5| Oryza sativa chromosome 3 BAC OJ1285_H07 genomic ... 40 4.3
3ref|XM_364392.1| Magnaporthe grisea 70-15 hypothetical protein (... 40 4.3
4gb|BC068695.1| Xenopus laevis hypothetical protein MGC81110, mRN... 40 4.3
5gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 4.3
6gb|DQ118863.1| Streptomyces fradiae strain NRRL18158 lipopeptide... 40 4.3
7gb|AC114474.2| Genomic sequence for Oryza sativa, Nipponbare str... 40 4.3
8gb|AC092748.2| Genomic sequence for Oryza sativa, Nipponbare str... 40 4.3
9dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.3
10dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.3
11gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 4.3
12dbj|AK071938.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.3
13dbj|AK065088.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.3
14gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, com... 40 4.3
15gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 4.3
16gb|AC091404.2| Sus scrofa clone RP44-74O11, complete sequence 40 4.3

>ref|NM_196176.1| Oryza sativa (japonica cultivar-group) putative Tyrosine/DOPA
           decarboxylase 2 (OSJNBa0032N04.8), mRNA
          Length = 1581

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 242 gcgccgccccggcgccgcacggcg 265
           |||||||| |||||||||||||||
Sbjct: 863 gcgccgccgcggcgccgcacggcg 886



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>gb|AC135557.5| Oryza sativa chromosome 3 BAC OJ1285_H07 genomic sequence, complete
             sequence
          Length = 113685

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 207   cactagaaaaggctttgatt 226
             ||||||||||||||||||||
Sbjct: 15178 cactagaaaaggctttgatt 15197



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>ref|XM_364392.1| Magnaporthe grisea 70-15 hypothetical protein (MG09237.4) partial
           mRNA
          Length = 1140

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 230 ccgggcgtcatggcgccgccccggcgcc 257
           |||||| ||||||||||||||| |||||
Sbjct: 478 ccgggcctcatggcgccgcccccgcgcc 505



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>gb|BC068695.1| Xenopus laevis hypothetical protein MGC81110, mRNA (cDNA clone
           MGC:81110 IMAGE:6317289), complete cds
          Length = 1945

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 202 tctcacactagaaaaggctt 221
           ||||||||||||||||||||
Sbjct: 839 tctcacactagaaaaggctt 858



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 207      cactagaaaaggctttgatt 226
                ||||||||||||||||||||
Sbjct: 23152148 cactagaaaaggctttgatt 23152129



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>gb|DQ118863.1| Streptomyces fradiae strain NRRL18158 lipopeptide antibiotic A54145
             biosynthetic gene cluster, complete sequence
          Length = 126933

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 250   ccggcgccgcacggcggcgg 269
             ||||||||||||||||||||
Sbjct: 86301 ccggcgccgcacggcggcgg 86282



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>gb|AC114474.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0032N04, from chromosome 10, complete sequence
          Length = 159445

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 242   gcgccgccccggcgccgcacggcg 265
             |||||||| |||||||||||||||
Sbjct: 62852 gcgccgccgcggcgccgcacggcg 62829



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>gb|AC092748.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0019N10, from chromosome 10, complete sequence
          Length = 192267

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 242    gcgccgccccggcgccgcacggcg 265
              |||||||| |||||||||||||||
Sbjct: 169528 gcgccgccgcggcgccgcacggcg 169551



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 242      gcgccgccccggcgccgcacggcg 265
                |||||||| |||||||||||||||
Sbjct: 11744791 gcgccgccgcggcgccgcacggcg 11744768



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 207      cactagaaaaggctttgatt 226
                ||||||||||||||||||||
Sbjct: 23145176 cactagaaaaggctttgatt 23145157



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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 242    gcgccgccccggcgccgcacggcg 265
              |||| |||||||||||||||||||
Sbjct: 287758 gcgcggccccggcgccgcacggcg 287781



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>dbj|AK071938.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013083I02, full
           insert sequence
          Length = 1675

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 207 cactagaaaaggctttgatt 226
           ||||||||||||||||||||
Sbjct: 95  cactagaaaaggctttgatt 76



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>dbj|AK065088.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001L20, full
            insert sequence
          Length = 3446

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 207  cactagaaaaggctttgatt 226
            ||||||||||||||||||||
Sbjct: 1887 cactagaaaaggctttgatt 1868



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>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 240    tggcgccgccccggcgccgc 259
              ||||||||||||||||||||
Sbjct: 372440 tggcgccgccccggcgccgc 372421



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 242      gcgccgccccggcgccgcacggcg 265
                |||||||| |||||||||||||||
Sbjct: 11752131 gcgccgccgcggcgccgcacggcg 11752108



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>gb|AC091404.2| Sus scrofa clone RP44-74O11, complete sequence
          Length = 102386

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 75   ctgaatctttctcccccaaa 94
            ||||||||||||||||||||
Sbjct: 7237 ctgaatctttctcccccaaa 7256


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,733,539
Number of Sequences: 3902068
Number of extensions: 2733539
Number of successful extensions: 36069
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 35784
Number of HSP's gapped (non-prelim): 285
length of query: 325
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 303
effective length of database: 17,147,199,772
effective search space: 5195601530916
effective search space used: 5195601530916
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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