ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bastl18h05 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AB012228.1| Zea mays mRNA for phosphoenolpyruvate carboxylase, complete cds Length = 3319 Score = 327 bits (165), Expect = 2e-86 Identities = 219/237 (92%) Strand = Plus / Plus Query: 172 ggagcggcaccagtcgatcgacgcgcagctgcggctcctcgtccccggcaaggtctccga 231 ||||||||||||||| |||||||||||||||||||| || | |||||| ||||||||||| Sbjct: 203 ggagcggcaccagtccatcgacgcgcagctgcggctgctggcccccgggaaggtctccga 262 Query: 232 ggatgacaaactcgtggagtacgacgcccttctcgtcgaccgcttcctcgacatcctcca 291 ||| ||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 263 ggacgacaagctcgtcgagtacgacgccctcctcgtcgaccgcttcctcgacatcctcca 322 Query: 292 ggacttgcacggcccccacctccgcgaattcgtgcaggagtgctacgagctctcggcgga 351 |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 323 ggacctgcacggcccccacctgcgcgaattcgtgcaggagtgctacgagctctcggcgga 382 Query: 352 gtacgagaccgatcgggacgaggcccggatagccgagctcgggagcaagctcaccag 408 |||||||| ||| ||||| ||||| ||| | | |||||||||||||||||||||||| Sbjct: 383 gtacgagaacgaccgggatgaggctcggcttggcgagctcgggagcaagctcaccag 439
>emb|X55664.1|SVPEPCA Sorghum vulgare mRNA for phosphoenolpyruvate carboxylase (PEPC) Length = 3128 Score = 319 bits (161), Expect = 4e-84 Identities = 218/237 (91%) Strand = Plus / Plus Query: 172 ggagcggcaccagtcgatcgacgcgcagctgcggctcctcgtccccggcaaggtctccga 231 |||||||||||||||||||||||||||||||||||| || | |||||| ||||||||||| Sbjct: 6 ggagcggcaccagtcgatcgacgcgcagctgcggctgctggcccccgggaaggtctccga 65 Query: 232 ggatgacaaactcgtggagtacgacgcccttctcgtcgaccgcttcctcgacatcctcca 291 ||| ||||| ||||| |||||||||||||| ||||||||||||||||| ||||||||||| Sbjct: 66 ggacgacaagctcgtcgagtacgacgccctcctcgtcgaccgcttccttgacatcctcca 125 Query: 292 ggacttgcacggcccccacctccgcgaattcgtgcaggagtgctacgagctctcggcgga 351 |||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct: 126 ggacctgcacggcccccacctgcgcgaattcgtccaggagtgctacgagctctcggcgga 185 Query: 352 gtacgagaccgatcgggacgaggcccggatagccgagctcgggagcaagctcaccag 408 |||||||| ||| ||||| ||||| ||| | | |||||||||||||||||||||||| Sbjct: 186 gtacgagaacgaccgggatgaggctcggctcggcgagctcgggagcaagctcaccag 242
>gb|AY491400.1| Setaria italica C3 phosphoenolpyruvate carboxylase (ppc1) mRNA, complete cds Length = 2886 Score = 317 bits (160), Expect = 2e-83 Identities = 217/236 (91%) Strand = Plus / Plus Query: 173 gagcggcaccagtcgatcgacgcgcagctgcggctcctcgtccccggcaaggtctccgag 232 ||||||||||||||||||||||||||||||||||| || | || ||||||||||||||| Sbjct: 10 gagcggcaccagtcgatcgacgcgcagctgcggctgctggcgccaggcaaggtctccgag 69 Query: 233 gatgacaaactcgtggagtacgacgcccttctcgtcgaccgcttcctcgacatcctccag 292 || ||||| ||||| |||||||||||||| |||||||| ||||||||||||||||||||| Sbjct: 70 gacgacaagctcgtcgagtacgacgccctcctcgtcgatcgcttcctcgacatcctccag 129 Query: 293 gacttgcacggcccccacctccgcgaattcgtgcaggagtgctacgagctctcggcggag 352 ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 130 gacctgcacggcccgcacctccgcgaattcgtgcaggagtgctacgagctctcggcggag 189 Query: 353 tacgagaccgatcgggacgaggcccggatagccgagctcgggagcaagctcaccag 408 ||||||| ||| || |||||||| ||| | | |||||||||||||||||||||||| Sbjct: 190 tacgagaacgaccgcgacgaggcgcggctcggcgagctcgggagcaagctcaccag 245
>gb|AY251482.1| Echinochloa crus-galli phosphoenolpyruvate carboxylase (ppc) mRNA, complete cds Length = 2886 Score = 309 bits (156), Expect = 4e-81 Identities = 216/236 (91%) Strand = Plus / Plus Query: 173 gagcggcaccagtcgatcgacgcgcagctgcggctcctcgtccccggcaaggtctccgag 232 ||||||||||||||||||||||||||||||||||| || | || ||||||||||||||| Sbjct: 10 gagcggcaccagtcgatcgacgcgcagctgcggctgctggcgccgggcaaggtctccgag 69 Query: 233 gatgacaaactcgtggagtacgacgcccttctcgtcgaccgcttcctcgacatcctccag 292 || ||||| ||||| |||||||||||||| |||||||||||||||||||||||||| ||| Sbjct: 70 gacgacaagctcgtcgagtacgacgccctcctcgtcgaccgcttcctcgacatcctacag 129 Query: 293 gacttgcacggcccccacctccgcgaattcgtgcaggagtgctacgagctctcggcggag 352 ||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 130 gacctgcacggcccgcacctccgcgaattcgtgcaggagtgctacgagctgtcggcggag 189 Query: 353 tacgagaccgatcgggacgaggcccggatagccgagctcgggagcaagctcaccag 408 ||||||| ||| || |||||||| ||| | | |||||||||||||||||||||||| Sbjct: 190 tacgagaacgaccgcgacgaggcgcggctcggcgagctcgggagcaagctcaccag 245
>gb|AF271995.1|AF271995 Oryza sativa phosphoenolpyruvate carboxylase mRNA, complete cds Length = 3307 Score = 309 bits (156), Expect = 4e-81 Identities = 240/268 (89%) Strand = Plus / Plus Query: 141 agatggcggcgccctcggggaaggccgcaatggagcggcaccagtcgatcgacgcgcagc 200 ||||||| ||| || | |||||||| || ||||||||||||||||||||||||||||||| Sbjct: 159 agatggccgcggccgccgggaaggcggcgatggagcggcaccagtcgatcgacgcgcagc 218 Query: 201 tgcggctcctcgtccccggcaaggtctccgaggatgacaaactcgtggagtacgacgccc 260 ||||||| |||| || || ||||| |||||||| ||||| ||||| ||||||||||||| Sbjct: 219 tgcggctgctcgcgccggggaaggtatccgaggacgacaagctcgtcgagtacgacgccc 278 Query: 261 ttctcgtcgaccgcttcctcgacatcctccaggacttgcacggcccccacctccgcgaat 320 | ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| Sbjct: 279 tcctcgtcgaccgcttcctcgacatcctccaggacctgcacggccctcacctccgcgaat 338 Query: 321 tcgtgcaggagtgctacgagctctcggcggagtacgagaccgatcgggacgaggcccgga 380 |||||||||||||||||||||| |||||||||||||||| ||| |||||||||| ||| Sbjct: 339 tcgtgcaggagtgctacgagctgtcggcggagtacgagaacgacagggacgaggcgcggc 398 Query: 381 tagccgagctcgggagcaagctcaccag 408 | | |||||| ||||| ||||||||||| Sbjct: 399 tcgacgagctggggaggaagctcaccag 426
>dbj|AK106451.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-103-F01, full insert sequence Length = 1540 Score = 309 bits (156), Expect = 4e-81 Identities = 240/268 (89%) Strand = Plus / Plus Query: 141 agatggcggcgccctcggggaaggccgcaatggagcggcaccagtcgatcgacgcgcagc 200 ||||||| ||| || | |||||||| || ||||||||||||||||||||||||||||||| Sbjct: 162 agatggccgcggccgccgggaaggcggcgatggagcggcaccagtcgatcgacgcgcagc 221 Query: 201 tgcggctcctcgtccccggcaaggtctccgaggatgacaaactcgtggagtacgacgccc 260 ||||||| |||| || || ||||| |||||||| ||||| ||||| ||||||||||||| Sbjct: 222 tgcggctgctcgcgccggggaaggtatccgaggacgacaagctcgtcgagtacgacgccc 281 Query: 261 ttctcgtcgaccgcttcctcgacatcctccaggacttgcacggcccccacctccgcgaat 320 | ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| Sbjct: 282 tcctcgtcgaccgcttcctcgacatcctccaggacctgcacggccctcacctccgcgaat 341 Query: 321 tcgtgcaggagtgctacgagctctcggcggagtacgagaccgatcgggacgaggcccgga 380 |||||||||||||||||||||| |||||||||||||||| ||| |||||||||| ||| Sbjct: 342 tcgtgcaggagtgctacgagctgtcggcggagtacgagaacgacagggacgaggcgcggc 401 Query: 381 tagccgagctcgggagcaagctcaccag 408 | | |||||| ||||| ||||||||||| Sbjct: 402 tcgacgagctggggaggaagctcaccag 429
>dbj|AK065425.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013011N21, full insert sequence Length = 3809 Score = 309 bits (156), Expect = 4e-81 Identities = 240/268 (89%) Strand = Plus / Plus Query: 141 agatggcggcgccctcggggaaggccgcaatggagcggcaccagtcgatcgacgcgcagc 200 ||||||| ||| || | |||||||| || ||||||||||||||||||||||||||||||| Sbjct: 169 agatggccgcggccgccgggaaggcggcgatggagcggcaccagtcgatcgacgcgcagc 228 Query: 201 tgcggctcctcgtccccggcaaggtctccgaggatgacaaactcgtggagtacgacgccc 260 ||||||| |||| || || ||||| |||||||| ||||| ||||| ||||||||||||| Sbjct: 229 tgcggctgctcgcgccggggaaggtatccgaggacgacaagctcgtcgagtacgacgccc 288 Query: 261 ttctcgtcgaccgcttcctcgacatcctccaggacttgcacggcccccacctccgcgaat 320 | ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| Sbjct: 289 tcctcgtcgaccgcttcctcgacatcctccaggacctgcacggccctcacctccgcgaat 348 Query: 321 tcgtgcaggagtgctacgagctctcggcggagtacgagaccgatcgggacgaggcccgga 380 |||||||||||||||||||||| |||||||||||||||| ||| |||||||||| ||| Sbjct: 349 tcgtgcaggagtgctacgagctgtcggcggagtacgagaacgacagggacgaggcgcggc 408 Query: 381 tagccgagctcgggagcaagctcaccag 408 | | |||||| ||||| ||||||||||| Sbjct: 409 tcgacgagctggggaggaagctcaccag 436
>dbj|AK065029.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001G17, full insert sequence Length = 3310 Score = 309 bits (156), Expect = 4e-81 Identities = 240/268 (89%) Strand = Plus / Plus Query: 141 agatggcggcgccctcggggaaggccgcaatggagcggcaccagtcgatcgacgcgcagc 200 ||||||| ||| || | |||||||| || ||||||||||||||||||||||||||||||| Sbjct: 169 agatggccgcggccgccgggaaggcggcgatggagcggcaccagtcgatcgacgcgcagc 228 Query: 201 tgcggctcctcgtccccggcaaggtctccgaggatgacaaactcgtggagtacgacgccc 260 ||||||| |||| || || ||||| |||||||| ||||| ||||| ||||||||||||| Sbjct: 229 tgcggctgctcgcgccggggaaggtatccgaggacgacaagctcgtcgagtacgacgccc 288 Query: 261 ttctcgtcgaccgcttcctcgacatcctccaggacttgcacggcccccacctccgcgaat 320 | ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| Sbjct: 289 tcctcgtcgaccgcttcctcgacatcctccaggacctgcacggccctcacctccgcgaat 348 Query: 321 tcgtgcaggagtgctacgagctctcggcggagtacgagaccgatcgggacgaggcccgga 380 |||||||||||||||||||||| |||||||||||||||| ||| |||||||||| ||| Sbjct: 349 tcgtgcaggagtgctacgagctgtcggcggagtacgagaacgacagggacgaggcgcggc 408 Query: 381 tagccgagctcgggagcaagctcaccag 408 | | |||||| ||||| ||||||||||| Sbjct: 409 tcgacgagctggggaggaagctcaccag 436
>gb|AY109352.1| Zea mays CL1793_1 mRNA sequence Length = 3349 Score = 276 bits (139), Expect = 5e-71 Identities = 210/237 (88%) Strand = Plus / Plus Query: 172 ggagcggcaccagtcgatcgacgcgcagctgcggctcctcgtccccggcaaggtctccga 231 ||||||||||||||| |||||||||||||||||||| || | || ||||||||||| Sbjct: 203 ggagcggcaccagtccatcgacgcgcagctgcggctgctggnnnnngggaaggtctccga 262 Query: 232 ggatgacaaactcgtggagtacgacgcccttctcgtcgaccgcttcctcgacatcctcca 291 ||| ||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 263 ggacgacaagctcgtcgagtacgacgccctcctcgtcgaccgcttcctcgacatcctcca 322 Query: 292 ggacttgcacggcccccacctccgcgaattcgtgcaggagtgctacgagctctcggcgga 351 |||| ||||||| |||| |||||||||||||||||||||||||||||||||||||| Sbjct: 323 ggacctgcacggnnnnnacctgcgcgaattcgtgcaggagtgctacgagctctcggcgga 382 Query: 352 gtacgagaccgatcgggacgaggcccggatagccgagctcgggagcaagctcaccag 408 |||||||| ||| ||||| ||||| ||| | | |||||||||||||||||||||||| Sbjct: 383 gtacgagaacgaccgggatgaggctcggcttggcgagctcgggagcaagctcaccag 439
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 222 bits (112), Expect = 7e-55 Identities = 166/184 (90%) Strand = Plus / Minus Query: 141 agatggcggcgccctcggggaaggccgcaatggagcggcaccagtcgatcgacgcgcagc 200 ||||||| ||| || | |||||||| || ||||||||||||||||||||||||||||||| Sbjct: 8183099 agatggccgcggccgccgggaaggcggcgatggagcggcaccagtcgatcgacgcgcagc 8183040 Query: 201 tgcggctcctcgtccccggcaaggtctccgaggatgacaaactcgtggagtacgacgccc 260 ||||||| |||| || || ||||| |||||||| ||||| ||||| ||||||||||||| Sbjct: 8183039 tgcggctgctcgcgccggggaaggtatccgaggacgacaagctcgtcgagtacgacgccc 8182980 Query: 261 ttctcgtcgaccgcttcctcgacatcctccaggacttgcacggcccccacctccgcgaat 320 | ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| Sbjct: 8182979 tcctcgtcgaccgcttcctcgacatcctccaggacctgcacggccctcacctccgcgaat 8182920 Query: 321 tcgt 324 |||| Sbjct: 8182919 tcgt 8182916 Score = 91.7 bits (46), Expect = 2e-15 Identities = 76/86 (88%) Strand = Plus / Minus Query: 323 gtgcaggagtgctacgagctctcggcggagtacgagaccgatcgggacgaggcccggata 382 |||||||||||||||||||| |||||||||||||||| ||| |||||||||| ||| | Sbjct: 8182816 gtgcaggagtgctacgagctgtcggcggagtacgagaacgacagggacgaggcgcggctc 8182757 Query: 383 gccgagctcgggagcaagctcaccag 408 | |||||| ||||| ||||||||||| Sbjct: 8182756 gacgagctggggaggaagctcaccag 8182731
>dbj|AP004117.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1134_F06 Length = 130968 Score = 222 bits (112), Expect = 7e-55 Identities = 166/184 (90%) Strand = Plus / Minus Query: 141 agatggcggcgccctcggggaaggccgcaatggagcggcaccagtcgatcgacgcgcagc 200 ||||||| ||| || | |||||||| || ||||||||||||||||||||||||||||||| Sbjct: 15245 agatggccgcggccgccgggaaggcggcgatggagcggcaccagtcgatcgacgcgcagc 15186 Query: 201 tgcggctcctcgtccccggcaaggtctccgaggatgacaaactcgtggagtacgacgccc 260 ||||||| |||| || || ||||| |||||||| ||||| ||||| ||||||||||||| Sbjct: 15185 tgcggctgctcgcgccggggaaggtatccgaggacgacaagctcgtcgagtacgacgccc 15126 Query: 261 ttctcgtcgaccgcttcctcgacatcctccaggacttgcacggcccccacctccgcgaat 320 | ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| Sbjct: 15125 tcctcgtcgaccgcttcctcgacatcctccaggacctgcacggccctcacctccgcgaat 15066 Query: 321 tcgt 324 |||| Sbjct: 15065 tcgt 15062 Score = 91.7 bits (46), Expect = 2e-15 Identities = 76/86 (88%) Strand = Plus / Minus Query: 323 gtgcaggagtgctacgagctctcggcggagtacgagaccgatcgggacgaggcccggata 382 |||||||||||||||||||| |||||||||||||||| ||| |||||||||| ||| | Sbjct: 14962 gtgcaggagtgctacgagctgtcggcggagtacgagaacgacagggacgaggcgcggctc 14903 Query: 383 gccgagctcgggagcaagctcaccag 408 | |||||| ||||| ||||||||||| Sbjct: 14902 gacgagctggggaggaagctcaccag 14877
>emb|X65137.1|SVPEPCGX S.vulgare pepC gene for PEP carboxylase Length = 7586 Score = 216 bits (109), Expect = 4e-53 Identities = 142/153 (92%) Strand = Plus / Plus Query: 172 ggagcggcaccagtcgatcgacgcgcagctgcggctcctcgtccccggcaaggtctccga 231 |||||||||||||||||||||||||||||||||||| || | |||||| ||||||||||| Sbjct: 844 ggagcggcaccagtcgatcgacgcgcagctgcggctgctggcccccgggaaggtctccga 903 Query: 232 ggatgacaaactcgtggagtacgacgcccttctcgtcgaccgcttcctcgacatcctcca 291 ||| ||||| ||||| |||||||||||||| ||||||||||||||||| ||||||||||| Sbjct: 904 ggacgacaagctcgtcgagtacgacgccctcctcgtcgaccgcttccttgacatcctcca 963 Query: 292 ggacttgcacggcccccacctccgcgaattcgt 324 |||| |||||||||||||||| ||||||||||| Sbjct: 964 ggacctgcacggcccccacctgcgcgaattcgt 996 Score = 109 bits (55), Expect = 7e-21 Identities = 76/83 (91%) Strand = Plus / Plus Query: 326 caggagtgctacgagctctcggcggagtacgagaccgatcgggacgaggcccggatagcc 385 |||||||||||||||||||||||||||||||||| ||| ||||| ||||| ||| | | | Sbjct: 1102 caggagtgctacgagctctcggcggagtacgagaacgaccgggatgaggctcggctcggc 1161 Query: 386 gagctcgggagcaagctcaccag 408 ||||||||||||||||||||||| Sbjct: 1162 gagctcgggagcaagctcaccag 1184
>emb|X63869.1|ZMPEPC2A Z.mays pepcZm2A gene for phosphoenolpyruvate carboxylase, 5' region Length = 601 Score = 212 bits (107), Expect = 7e-52 Identities = 140/151 (92%) Strand = Plus / Plus Query: 172 ggagcggcaccagtcgatcgacgcgcagctgcggctcctcgtccccggcaaggtctccga 231 ||||||||||||||| |||||||||||||||||||| || | |||||| ||||||||||| Sbjct: 451 ggagcggcaccagtccatcgacgcgcagctgcggctgctggcccccgggaaggtctccga 510 Query: 232 ggatgacaaactcgtggagtacgacgcccttctcgtcgaccgcttcctcgacatcctcca 291 ||| ||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 511 ggacgacaagctcgtcgagtacgacgccctcctcgtcgaccgcttcctcgacatcctcca 570 Query: 292 ggacttgcacggcccccacctccgcgaattc 322 |||| |||||||||||||||| ||||||||| Sbjct: 571 ggacctgcacggcccccacctgcgcgaattc 601
>gb|AF495586.1| Setaria italica putative C4 phosphoenolpyruvate carboxylase (ppc) mRNA, complete cds Length = 3214 Score = 186 bits (94), Expect = 4e-44 Identities = 169/194 (87%) Strand = Plus / Plus Query: 178 gcaccagtcgatcgacgcgcagctgcggctcctcgtccccggcaaggtctccgaggatga 237 |||||| || |||||||||||||| |||||||| | |||||||||||||||||||| || Sbjct: 87 gcaccactccatcgacgcgcagctccggctcctggcacccggcaaggtctccgaggacga 146 Query: 238 caaactcgtggagtacgacgcccttctcgtcgaccgcttcctcgacatcctccaggactt 297 ||| ||||| |||||||||||||| ||| |||||||||||||||||||| |||||||| | Sbjct: 147 caagctcgtcgagtacgacgccctcctcatcgaccgcttcctcgacatcttccaggacct 206 Query: 298 gcacggcccccacctccgcgaattcgtgcaggagtgctacgagctctcggcggagtacga 357 |||||||| || |||| |||||||| ||||||||||||||| | ||||||||||||| Sbjct: 207 ccacggcccaaacatccgtgaattcgtccaggagtgctacgaggtggcggcggagtacga 266 Query: 358 gaccgatcgggacg 371 | |||||| |||| Sbjct: 267 gcgcgatcgcgacg 280
>gb|AY103747.1| Zea mays PCO070206 mRNA sequence Length = 3289 Score = 145 bits (73), Expect = 1e-31 Identities = 154/181 (85%) Strand = Plus / Plus Query: 178 gcaccagtcgatcgacgcgcagctgcggctcctcgtccccggcaaggtctccgaggatga 237 |||||| || |||||||||||||| || | || ||||| ||||||||||||||||| || Sbjct: 116 gcaccactccatcgacgcgcagctccgtcagctggtcccaggcaaggtctccgaggacga 175 Query: 238 caaactcgtggagtacgacgcccttctcgtcgaccgcttcctcgacatcctccaggactt 297 ||| ||| | |||||||| || || |||||||||||||||||| |||||||||||||| | Sbjct: 176 caagctcatcgagtacgatgcgctgctcgtcgaccgcttcctcaacatcctccaggacct 235 Query: 298 gcacggcccccacctccgcgaattcgtgcaggagtgctacgagctctcggcggagtacga 357 ||||| ||| ||| |||||||| || ||||||||||||||| ||||||| || ||||| Sbjct: 236 ccacgggcccagccttcgcgaatttgtccaggagtgctacgaggtctcggccgactacga 295 Query: 358 g 358 | Sbjct: 296 g 296
>emb|X15238.1|ZMPEPC1 Maize mRNA for phosphoenolpyruvate carboxylase (EC 4.1.1.31) Length = 3265 Score = 137 bits (69), Expect = 3e-29 Identities = 153/181 (84%) Strand = Plus / Plus Query: 178 gcaccagtcgatcgacgcgcagctgcggctcctcgtccccggcaaggtctccgaggatga 237 |||||| || |||||||||||||| || | || ||||| ||||||||||||||||| || Sbjct: 116 gcaccactccatcgacgcgcagctccgtcagctggtcccaggcaaggtctccgaggacga 175 Query: 238 caaactcgtggagtacgacgcccttctcgtcgaccgcttcctcgacatcctccaggactt 297 ||| ||| | |||||||| || || |||||||||||||||||| |||||||||||||| | Sbjct: 176 caagctcatcgagtacgatgcgctgctcgtcgaccgcttcctcaacatcctccaggacct 235 Query: 298 gcacggcccccacctccgcgaattcgtgcaggagtgctacgagctctcggcggagtacga 357 ||||| ||| ||| |||||||| || ||||||||||||||| |||| || || ||||| Sbjct: 236 ccacgggcccagccttcgcgaatttgtccaggagtgctacgaggtctcagccgactacga 295 Query: 358 g 358 | Sbjct: 296 g 296
>gb|DQ204769.1| Zea mays cultivar Bijoy Composite phosphoenolpyruvate carboxylase mRNA, partial cds Length = 558 Score = 133 bits (67), Expect = 5e-28 Identities = 139/163 (85%) Strand = Plus / Plus Query: 178 gcaccagtcgatcgacgcgcagctgcggctcctcgtccccggcaaggtctccgaggatga 237 |||||| || |||||||||||||| || | || ||||| ||||||||||||||||| || Sbjct: 36 gcaccactccatcgacgcgcagctccgtcagctggtcccaggcaaggtctccgaggacga 95 Query: 238 caaactcgtggagtacgacgcccttctcgtcgaccgcttcctcgacatcctccaggactt 297 ||| ||| | |||||||| || || |||||||||||||||||| |||||||||||||| | Sbjct: 96 caagctcatcgagtacgatgcgctgctcgtcgaccgcttcctcaacatcctccaggacct 155 Query: 298 gcacggcccccacctccgcgaattcgtgcaggagtgctacgag 340 ||||| ||| ||| |||||||| || ||||||||||||||| Sbjct: 156 ccacgggcccagccttcgcgaatttgtccaggagtgctacgag 198
>emb|AJ536629.1|ZMA536629 Zea mays mRNA for phosphoenolpyruvate carboxylase (ppc1 gene), clone pM500 Length = 2913 Score = 133 bits (67), Expect = 5e-28 Identities = 139/163 (85%) Strand = Plus / Plus Query: 178 gcaccagtcgatcgacgcgcagctgcggctcctcgtccccggcaaggtctccgaggatga 237 |||||| || |||||||||||||| || | || ||||| ||||||||||||||||| || Sbjct: 36 gcaccactccatcgacgcgcagctccgtcagctggtcccaggcaaggtctccgaggacga 95 Query: 238 caaactcgtggagtacgacgcccttctcgtcgaccgcttcctcgacatcctccaggactt 297 ||| ||| | |||||||| || || |||||||||||||||||| |||||||||||||| | Sbjct: 96 caagctcatcgagtacgatgcgctgctcgtcgaccgcttcctcaacatcctccaggacct 155 Query: 298 gcacggcccccacctccgcgaattcgtgcaggagtgctacgag 340 ||||| ||| ||| |||||||| || ||||||||||||||| Sbjct: 156 ccacgggcccagccttcgcgaatttgtccaggagtgctacgag 198
>emb|X07168.1|ZMPEPC5A Maize MRNA for phosphoenolpyruvate carboxylase 5'-end (pM500, pM541, pM499) Length = 330 Score = 133 bits (67), Expect = 5e-28 Identities = 139/163 (85%) Strand = Plus / Plus Query: 178 gcaccagtcgatcgacgcgcagctgcggctcctcgtccccggcaaggtctccgaggatga 237 |||||| || |||||||||||||| || | || ||||| ||||||||||||||||| || Sbjct: 118 gcaccactccatcgacgcgcagctccgtcagctggtcccaggcaaggtctccgaggacga 177 Query: 238 caaactcgtggagtacgacgcccttctcgtcgaccgcttcctcgacatcctccaggactt 297 ||| ||| | |||||||| || || |||||||||||||||||| |||||||||||||| | Sbjct: 178 caagctcatcgagtacgatgcgctgctcgtcgaccgcttcctcaacatcctccaggacct 237 Query: 298 gcacggcccccacctccgcgaattcgtgcaggagtgctacgag 340 ||||| ||| ||| |||||||| || ||||||||||||||| Sbjct: 238 ccacgggcccagccttcgcgaatttgtccaggagtgctacgag 280
>emb|AJ007705.1|TAE7705 Triticum aestivum PEPC gene Length = 5845 Score = 123 bits (62), Expect = 5e-25 Identities = 98/110 (89%) Strand = Plus / Plus Query: 184 gtcgatcgacgcgcagctgcggctcctcgtccccggcaaggtctccgaggatgacaaact 243 |||||||||||||||||||||||| |||||||||| |||||| |||||||| ||||| || Sbjct: 446 gtcgatcgacgcgcagctgcggctgctcgtccccgccaaggtgtccgaggacgacaagct 505 Query: 244 cgtggagtacgacgcccttctcgtcgaccgcttcctcgacatcctccagg 293 | | ||||||||||| || ||| ||||||||||||||||| |||| |||| Sbjct: 506 cattgagtacgacgcgctcctcctcgaccgcttcctcgacgtcctgcagg 555
>emb|X17379.1|SVPEPC Sorghum vulgare mRNA for phosphoenolpyruvate involved in C4 photosynthesis (EC 4.1.1.31) Length = 3192 Score = 117 bits (59), Expect = 3e-23 Identities = 154/186 (82%), Gaps = 6/186 (3%) Strand = Plus / Plus Query: 173 gagcggcaccagtcgatcgacgcgcagctgcggctcctcgtccccggcaaggtctccgag 232 ||||||||||| || |||||||||||||| || ||||| |||||||||||||||||| Sbjct: 41 gagcggcaccactccatcgacgcgcagctccgtgccctcgcacccggcaaggtctccgag 100 Query: 233 gatgacaaactcgtggagtacgacgcccttctcgtcgaccgcttcctcgacatcctccag 292 || ||| | |||| |||||||| |||||||||||||||||||||||||||||| Sbjct: 101 gag------ctcatccagtatgacgccctgctcgtcgaccgcttcctcgacatcctccag 154 Query: 293 gacttgcacggcccccacctccgcgaattcgtgcaggagtgctacgagctctcggcggag 352 ||| | || |||||| ||| |||||||| || ||||||||||||||| | ||||| || Sbjct: 155 gacctccatggccccagccttcgcgaatttgtccaggagtgctacgaggtgtcggccgac 214 Query: 353 tacgag 358 |||||| Sbjct: 215 tacgag 220
>emb|X59925.1|SVPEPCG S.vulgare PEPC gene for phosphoenolpyruvate carboxylase Length = 6018 Score = 113 bits (57), Expect = 5e-22 Identities = 105/121 (86%) Strand = Plus / Plus Query: 184 gtcgatcgacgcgcagctgcggctcctcgtccccggcaaggtctccgaggatgacaaact 243 |||||||||||||||||||||| | || || || || |||||||| ||||| ||||| || Sbjct: 671 gtcgatcgacgcgcagctgcggatgctggtgccggggaaggtctcggaggacgacaagct 730 Query: 244 cgtggagtacgacgcccttctcgtcgaccgcttcctcgacatcctccaggacttgcacgg 303 | | ||||||||||| || ||| ||||||||||||||||||||||||||||| | ||||| Sbjct: 731 catcgagtacgacgcgctcctcctcgaccgcttcctcgacatcctccaggacctccacgg 790 Query: 304 c 304 | Sbjct: 791 c 791
>gb|S60262.1| pepcZm1=phosphoenolpyruvate carboxylase {5' region} [corn, protoplast, Genomic, 813 nt] Length = 813 Score = 111 bits (56), Expect = 2e-21 Identities = 122/144 (84%) Strand = Plus / Plus Query: 178 gcaccagtcgatcgacgcgcagctgcggctcctcgtccccggcaaggtctccgaggatga 237 |||||| || |||||||||||||| || | || ||||| ||||||||||||||||| || Sbjct: 669 gcaccactccatcgacgcgcagctccgtcagctggtcccaggcaaggtctccgaggacga 728 Query: 238 caaactcgtggagtacgacgcccttctcgtcgaccgcttcctcgacatcctccaggactt 297 ||| ||| | |||||||| || || |||||||||||||||||| |||||||||||||| | Sbjct: 729 caagctcatcgagtacgatgcgctgctcgtcgaccgcttcctcaacatcctccaggacct 788 Query: 298 gcacggcccccacctccgcgaatt 321 ||||| ||| ||| |||||||| Sbjct: 789 ccacgggcccagccttcgcgaatt 812
>emb|X15239.1|ZMPEPC1G Maize PEPC1 gene for phosphoenolpyruvate carboxylase (EC 4.1.1.31) Length = 6151 Score = 111 bits (56), Expect = 2e-21 Identities = 122/144 (84%) Strand = Plus / Plus Query: 178 gcaccagtcgatcgacgcgcagctgcggctcctcgtccccggcaaggtctccgaggatga 237 |||||| || |||||||||||||| || | || ||||| ||||||||||||||||| || Sbjct: 780 gcaccactccatcgacgcgcagctccgtcagctggtcccaggcaaggtctccgaggacga 839 Query: 238 caaactcgtggagtacgacgcccttctcgtcgaccgcttcctcgacatcctccaggactt 297 ||| ||| | |||||||| || || |||||||||||||||||| |||||||||||||| | Sbjct: 840 caagctcatcgagtacgatgcgctgctcgtcgaccgcttcctcaacatcctccaggacct 899 Query: 298 gcacggcccccacctccgcgaatt 321 ||||| ||| ||| |||||||| Sbjct: 900 ccacgggcccagccttcgcgaatt 923
>emb|X15642.1|ZMPEP Z.mays gene for phosphoenolpyruvate carboxylase (EC 4.1.1.31) Length = 6781 Score = 111 bits (56), Expect = 2e-21 Identities = 122/144 (84%) Strand = Plus / Plus Query: 178 gcaccagtcgatcgacgcgcagctgcggctcctcgtccccggcaaggtctccgaggatga 237 |||||| || |||||||||||||| || | || ||||| ||||||||||||||||| || Sbjct: 1332 gcaccactccatcgacgcgcagctccgtcagctggtcccaggcaaggtctccgaggacga 1391 Query: 238 caaactcgtggagtacgacgcccttctcgtcgaccgcttcctcgacatcctccaggactt 297 ||| ||| | |||||||| || || |||||||||||||||||| |||||||||||||| | Sbjct: 1392 caagctcatcgagtacgatgcgctgctcgtcgaccgcttcctcaacatcctccaggacct 1451 Query: 298 gcacggcccccacctccgcgaatt 321 ||||| ||| ||| |||||||| Sbjct: 1452 ccacgggcccagccttcgcgaatt 1475
>gb|AF268091.1|AF268091 Chloris gayana phosphoenolpyruvate carboxylase (ppc) mRNA, complete cds Length = 3137 Score = 111 bits (56), Expect = 2e-21 Identities = 149/180 (82%) Strand = Plus / Plus Query: 178 gcaccagtcgatcgacgcgcagctgcggctcctcgtccccggcaaggtctccgaggatga 237 |||||| || || ||||||||||| ||||||| | |||||||||||||| ||||| || Sbjct: 40 gcaccactccattgacgcgcagctcaggctcctggctcccggcaaggtctcggaggacga 99 Query: 238 caaactcgtggagtacgacgcccttctcgtcgaccgcttcctcgacatcctccaggactt 297 ||| ||||| |||||||| ||||| ||| ||||||||||||| |||||||||||| || | Sbjct: 100 caagctcgtcgagtacgatgccctgctcatcgaccgcttcctggacatcctccagaacct 159 Query: 298 gcacggcccccacctccgcgaattcgtgcaggagtgctacgagctctcggcggagtacga 357 || ||| | |||||| ||| |||| ||||||||||||||| | || || |||||||| Sbjct: 160 ccatggctcagccctccgtgaactcgtccaggagtgctacgagatgtccgccgagtacga 219
>emb|AJ293346.1|SOF293346 Saccharum officinarum mRNA for putative C4 phosphoenolpyruvate carboxylase (PEPC gene) Length = 3067 Score = 109 bits (55), Expect = 7e-21 Identities = 153/186 (82%), Gaps = 6/186 (3%) Strand = Plus / Plus Query: 173 gagcggcaccagtcgatcgacgcgcagctgcggctcctcgtccccggcaaggtctccgag 232 ||||||||||| || |||||||||||||| || ||| | ||||||||||||||||||| Sbjct: 10 gagcggcaccactccatcgacgcgcagctccgtgccctggcccccggcaaggtctccgag 69 Query: 233 gatgacaaactcgtggagtacgacgcccttctcgtcgaccgcttcctcgacatcctccag 292 || ||| | ||||||||||||| ||||||||||| |||||||||||||||||| Sbjct: 70 gag------ctcatccagtacgacgccctgctcgtcgaccgtttcctcgacatcctccag 123 Query: 293 gacttgcacggcccccacctccgcgaattcgtgcaggagtgctacgagctctcggcggag 352 ||| | || ||||| ||| |||||||| || ||||||||||||||| | ||||| || Sbjct: 124 gacctccatggccctagccttcgcgaatttgtccaggagtgctacgaggtgtcggccgat 183 Query: 353 tacgag 358 |||||| Sbjct: 184 tacgag 189
>ref|NM_188892.2| Oryza sativa (japonica cultivar-group), mRNA Length = 3158 Score = 103 bits (52), Expect = 4e-19 Identities = 117/136 (86%), Gaps = 2/136 (1%) Strand = Plus / Plus Query: 184 gtcgatcgacgcgcagctgcggctcctcgtccccggc-aaggtctccgaggatgacaaac 242 |||||||||||||||||||||| | || | | ||||| ||| | || ||||| ||||| | Sbjct: 82 gtcgatcgacgcgcagctgcggatgctgg-cgccggcgaagctgtcggaggacgacaagc 140 Query: 243 tcgtggagtacgacgcccttctcgtcgaccgcttcctcgacatcctccaggacttgcacg 302 | ||||||||||||||||| ||| ||||||||||||||||||||||||||||| | |||| Sbjct: 141 tggtggagtacgacgccctcctcctcgaccgcttcctcgacatcctccaggacctccacg 200 Query: 303 gcccccacctccgcga 318 || | |||||||||| Sbjct: 201 gcgacgacctccgcga 216
>ref|XM_507204.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1484_G09.129-1 mRNA Length = 3539 Score = 103 bits (52), Expect = 4e-19 Identities = 117/136 (86%), Gaps = 2/136 (1%) Strand = Plus / Plus Query: 184 gtcgatcgacgcgcagctgcggctcctcgtccccggc-aaggtctccgaggatgacaaac 242 |||||||||||||||||||||| | || | | ||||| ||| | || ||||| ||||| | Sbjct: 347 gtcgatcgacgcgcagctgcggatgctgg-cgccggcgaagctgtcggaggacgacaagc 405 Query: 243 tcgtggagtacgacgcccttctcgtcgaccgcttcctcgacatcctccaggacttgcacg 302 | ||||||||||||||||| ||| ||||||||||||||||||||||||||||| | |||| Sbjct: 406 tggtggagtacgacgccctcctcctcgaccgcttcctcgacatcctccaggacctccacg 465 Query: 303 gcccccacctccgcga 318 || | |||||||||| Sbjct: 466 gcgacgacctccgcga 481
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 103 bits (52), Expect = 4e-19 Identities = 117/136 (86%), Gaps = 2/136 (1%) Strand = Plus / Minus Query: 184 gtcgatcgacgcgcagctgcggctcctcgtccccggc-aaggtctccgaggatgacaaac 242 |||||||||||||||||||||| | || | | ||||| ||| | || ||||| ||||| | Sbjct: 16962979 gtcgatcgacgcgcagctgcggatgctgg-cgccggcgaagctgtcggaggacgacaagc 16962921 Query: 243 tcgtggagtacgacgcccttctcgtcgaccgcttcctcgacatcctccaggacttgcacg 302 | ||||||||||||||||| ||| ||||||||||||||||||||||||||||| | |||| Sbjct: 16962920 tggtggagtacgacgccctcctcctcgaccgcttcctcgacatcctccaggacctccacg 16962861 Query: 303 gcccccacctccgcga 318 || | |||||||||| Sbjct: 16962860 gcgacgacctccgcga 16962845 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 32 gcctccaccgttgccgccac 51 |||||||||||||||||||| Sbjct: 17104990 gcctccaccgttgccgccac 17105009
>dbj|AP003913.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1484_G09 Length = 124695 Score = 103 bits (52), Expect = 4e-19 Identities = 117/136 (86%), Gaps = 2/136 (1%) Strand = Plus / Minus Query: 184 gtcgatcgacgcgcagctgcggctcctcgtccccggc-aaggtctccgaggatgacaaac 242 |||||||||||||||||||||| | || | | ||||| ||| | || ||||| ||||| | Sbjct: 109990 gtcgatcgacgcgcagctgcggatgctgg-cgccggcgaagctgtcggaggacgacaagc 109932 Query: 243 tcgtggagtacgacgcccttctcgtcgaccgcttcctcgacatcctccaggacttgcacg 302 | ||||||||||||||||| ||| ||||||||||||||||||||||||||||| | |||| Sbjct: 109931 tggtggagtacgacgccctcctcctcgaccgcttcctcgacatcctccaggacctccacg 109872 Query: 303 gcccccacctccgcga 318 || | |||||||||| Sbjct: 109871 gcgacgacctccgcga 109856
>dbj|AK073703.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033055B18, full insert sequence Length = 3538 Score = 103 bits (52), Expect = 4e-19 Identities = 117/136 (86%), Gaps = 2/136 (1%) Strand = Plus / Plus Query: 184 gtcgatcgacgcgcagctgcggctcctcgtccccggc-aaggtctccgaggatgacaaac 242 |||||||||||||||||||||| | || | | ||||| ||| | || ||||| ||||| | Sbjct: 346 gtcgatcgacgcgcagctgcggatgctgg-cgccggcgaagctgtcggaggacgacaagc 404 Query: 243 tcgtggagtacgacgcccttctcgtcgaccgcttcctcgacatcctccaggacttgcacg 302 | ||||||||||||||||| ||| ||||||||||||||||||||||||||||| | |||| Sbjct: 405 tggtggagtacgacgccctcctcctcgaccgcttcctcgacatcctccaggacctccacg 464 Query: 303 gcccccacctccgcga 318 || | |||||||||| Sbjct: 465 gcgacgacctccgcga 480
>dbj|AK067572.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013108G24, full insert sequence Length = 3158 Score = 103 bits (52), Expect = 4e-19 Identities = 117/136 (86%), Gaps = 2/136 (1%) Strand = Plus / Plus Query: 184 gtcgatcgacgcgcagctgcggctcctcgtccccggc-aaggtctccgaggatgacaaac 242 |||||||||||||||||||||| | || | | ||||| ||| | || ||||| ||||| | Sbjct: 82 gtcgatcgacgcgcagctgcggatgctgg-cgccggcgaagctgtcggaggacgacaagc 140 Query: 243 tcgtggagtacgacgcccttctcgtcgaccgcttcctcgacatcctccaggacttgcacg 302 | ||||||||||||||||| ||| ||||||||||||||||||||||||||||| | |||| Sbjct: 141 tggtggagtacgacgccctcctcctcgaccgcttcctcgacatcctccaggacctccacg 200 Query: 303 gcccccacctccgcga 318 || | |||||||||| Sbjct: 201 gcgacgacctccgcga 216
>gb|AY135709.1| Saccharum hybrid cultivar putative C4 phosphoenolpyruvate carboxylase mRNA, complete cds Length = 3205 Score = 101 bits (51), Expect = 2e-18 Identities = 152/186 (81%), Gaps = 6/186 (3%) Strand = Plus / Plus Query: 173 gagcggcaccagtcgatcgacgcgcagctgcggctcctcgtccccggcaaggtctccgag 232 ||||||||||| || |||||||||||||| || ||| | ||||||||||||||||||| Sbjct: 105 gagcggcaccactccatcgacgcgcagctccgtgccctggcccccggcaaggtctccgag 164 Query: 233 gatgacaaactcgtggagtacgacgcccttctcgtcgaccgcttcctcgacatcctccag 292 || ||| | ||||||||||||| |||| |||||| |||||||||||||||||| Sbjct: 165 gag------ctcatccagtacgacgccctgctcgccgaccgtttcctcgacatcctccag 218 Query: 293 gacttgcacggcccccacctccgcgaattcgtgcaggagtgctacgagctctcggcggag 352 ||| | || ||||| ||| |||||||| || ||||||||||||||| | ||||| || Sbjct: 219 gacctccatggccctagccttcgcgaatttgtccaggagtgctacgaggtgtcggccgat 278 Query: 353 tacgag 358 |||||| Sbjct: 279 tacgag 284
>emb|X07171.1|ZMPEPC5B Maize mRNA for phosphoenolpyruvate carboxylase 5'end (pM530) Length = 168 Score = 99.6 bits (50), Expect = 7e-18 Identities = 116/138 (84%) Strand = Plus / Plus Query: 221 aaggtctccgaggatgacaaactcgtggagtacgacgcccttctcgtcgaccgcttcctc 280 |||||||||||||| ||||| ||| | |||||||| || || |||||||||||||||||| Sbjct: 1 aaggtctccgaggacgacaagctcatcgagtacgatgcgctgctcgtcgaccgcttcctc 60 Query: 281 gacatcctccaggacttgcacggcccccacctccgcgaattcgtgcaggagtgctacgag 340 ||||||| |||||| | ||||| || ||| |||||||| || ||||||||||||||| Sbjct: 61 aacatccttcaggacctccacgggccaagccttcgcgaatttgtccaggagtgctacgag 120 Query: 341 ctctcggcggagtacgag 358 | ||||| || |||||| Sbjct: 121 gtatcggccgactacgag 138
>gb|M86661.1|SCFSCPEPCD Saccharum hybrid cultivar H32-8560 phosphoenolpyruvate carboxylase (SCPEPCD1) gene, complete cds Length = 8638 Score = 97.6 bits (49), Expect = 3e-17 Identities = 100/117 (85%) Strand = Plus / Plus Query: 188 atcgacgcgcagctgcggctcctcgtccccggcaaggtctccgaggatgacaaactcgtg 247 |||||||||||||||||||| || | ||| ||| ||||||| |||||||| || || Sbjct: 1799 atcgacgcgcagctgcggctgctggccccgcagaagctctccgacgatgacaagcttgtc 1858 Query: 248 gagtacgacgcccttctcgtcgaccgcttcctcgacatcctccaggacttgcacggc 304 |||||||||||||| ||| ||||||| |||||||||||||| |||||| |||||||| Sbjct: 1859 gagtacgacgccctgctcctcgaccggttcctcgacatcctacaggacctgcacggc 1915
>emb|AJ318338.1|SSP318338 Saccharum spontaneum mRNA for putative C4 phosphoenolpyruvate carboxylase (pepc gene), (C4 PPCSs-1) Length = 3015 Score = 93.7 bits (47), Expect = 4e-16 Identities = 151/186 (81%), Gaps = 6/186 (3%) Strand = Plus / Plus Query: 173 gagcggcaccagtcgatcgacgcgcagctgcggctcctcgtccccggcaaggtctccgag 232 ||||||||||| || |||||||||||||| || ||| | ||||| ||||||||||||| Sbjct: 10 gagcggcaccactccatcgacgcgcagctccgtgccctggcccccgacaaggtctccgag 69 Query: 233 gatgacaaactcgtggagtacgacgcccttctcgtcgaccgcttcctcgacatcctccag 292 || ||| | ||||||||||||| |||| |||||| |||||||||||||||||| Sbjct: 70 gag------ctcatccagtacgacgccctgctcgccgaccgtttcctcgacatcctccag 123 Query: 293 gacttgcacggcccccacctccgcgaattcgtgcaggagtgctacgagctctcggcggag 352 ||| | || ||||| ||| |||||||| || ||||||||||||||| | ||||| || Sbjct: 124 gacctccatggccctagccttcgcgaatttgtccaggagtgctacgaggtgtcggccgat 183 Query: 353 tacgag 358 |||||| Sbjct: 184 tacgag 189
>emb|X63756.1|SVPEPCAA S.vulgare PEPC gene Length = 7071 Score = 91.7 bits (46), Expect = 2e-15 Identities = 123/149 (82%), Gaps = 6/149 (4%) Strand = Plus / Plus Query: 173 gagcggcaccagtcgatcgacgcgcagctgcggctcctcgtccccggcaaggtctccgag 232 ||||||||||| || |||||||||||||| || ||||| |||||||||||||||||| Sbjct: 635 gagcggcaccactccatcgacgcgcagctccgtgccctcgcacccggcaaggtctccgag 694 Query: 233 gatgacaaactcgtggagtacgacgcccttctcgtcgaccgcttcctcgacatcctccag 292 || ||| | |||| |||||||| |||||||||||||||||||||||||||||| Sbjct: 695 gag------ctcatccagtatgacgccctgctcgtcgaccgcttcctcgacatcctccag 748 Query: 293 gacttgcacggcccccacctccgcgaatt 321 ||| | || |||||| ||| |||||||| Sbjct: 749 gacctccatggccccagccttcgcgaatt 777
>gb|AY187619.1| Oryza sativa (indica cultivar-group) phosphoenolpyruvate carboxylase (PEPC) mRNA, complete cds Length = 2981 Score = 91.7 bits (46), Expect = 2e-15 Identities = 61/66 (92%) Strand = Plus / Plus Query: 230 gaggatgacaaactcgtggagtacgacgcccttctcgtcgaccgcttcctcgacatcctc 289 ||||| ||||| || ||||||||||||||||| ||| ||||||||||||||||||||||| Sbjct: 134 gaggacgacaagctggtggagtacgacgccctcctcctcgaccgcttcctcgacatcctc 193 Query: 290 caggac 295 |||||| Sbjct: 194 caggac 199 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Plus Query: 184 gtcgatcgacgcgcagctgcgg 205 |||||||||||||||||||||| Sbjct: 88 gtcgatcgacgcgcagctgcgg 109
>ref|NM_191306.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2901 Score = 77.8 bits (39), Expect = 3e-11 Identities = 90/107 (84%) Strand = Plus / Plus Query: 188 atcgacgcgcagctgcggctcctcgtccccggcaaggtctccgaggatgacaaactcgtg 247 |||||||||||||||||| |||| | || ||| |||| ||||| ||||| || ||| Sbjct: 34 atcgacgcgcagctgcggatcctggcgcctaagaagctctcggaggacgacaagcttgtg 93 Query: 248 gagtacgacgcccttctcgtcgaccgcttcctcgacatcctccagga 294 ||||||||||| || ||| |||| ||||||||||||||||||||||| Sbjct: 94 gagtacgacgcgctgctcctcgatcgcttcctcgacatcctccagga 140
>emb|X03613.1|ZMPEPCR Maize mRNA for phosphoenolpyruvate carboxylase (PEPCase EC 4.1.1.31) Length = 3028 Score = 77.8 bits (39), Expect = 3e-11 Identities = 93/111 (83%) Strand = Plus / Plus Query: 248 gagtacgacgcccttctcgtcgaccgcttcctcgacatcctccaggacttgcacggcccc 307 |||||||| || || |||||||||||||||||| ||||||| |||||| | ||||| || Sbjct: 2 gagtacgatgcgctgctcgtcgaccgcttcctcaacatccttcaggacctccacgggcct 61 Query: 308 cacctccgcgaattcgtgcaggagtgctacgagctctcggcggagtacgag 358 ||| |||||||| || ||||||||||||||| | ||||| || |||||| Sbjct: 62 agccttcgcgaatttgtccaggagtgctacgaggtatcggccgactacgag 112
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 77.8 bits (39), Expect = 3e-11 Identities = 90/107 (84%) Strand = Plus / Minus Query: 188 atcgacgcgcagctgcggctcctcgtccccggcaaggtctccgaggatgacaaactcgtg 247 |||||||||||||||||| |||| | || ||| |||| ||||| ||||| || ||| Sbjct: 31858097 atcgacgcgcagctgcggatcctggcgcctaagaagctctcggaggacgacaagcttgtg 31858038 Query: 248 gagtacgacgcccttctcgtcgaccgcttcctcgacatcctccagga 294 ||||||||||| || ||| |||| ||||||||||||||||||||||| Sbjct: 31858037 gagtacgacgcgctgctcctcgatcgcttcctcgacatcctccagga 31857991 Score = 46.1 bits (23), Expect = 0.090 Identities = 41/47 (87%) Strand = Plus / Plus Query: 258 cccttctcgtcgaccgcttcctcgacatcctccaggacttgcacggc 304 |||| ||||||| |||||||||||||||||| ||||| | |||||| Sbjct: 5898957 ccctcctcgtcgcgcgcttcctcgacatcctcgaggacctccacggc 5899003
>dbj|AP003409.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1131G08 Length = 158241 Score = 77.8 bits (39), Expect = 3e-11 Identities = 90/107 (84%) Strand = Plus / Minus Query: 188 atcgacgcgcagctgcggctcctcgtccccggcaaggtctccgaggatgacaaactcgtg 247 |||||||||||||||||| |||| | || ||| |||| ||||| ||||| || ||| Sbjct: 44175 atcgacgcgcagctgcggatcctggcgcctaagaagctctcggaggacgacaagcttgtg 44116 Query: 248 gagtacgacgcccttctcgtcgaccgcttcctcgacatcctccagga 294 ||||||||||| || ||| |||| ||||||||||||||||||||||| Sbjct: 44115 gagtacgacgcgctgctcctcgatcgcttcctcgacatcctccagga 44069
>dbj|AK101274.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033033B07, full insert sequence Length = 3056 Score = 77.8 bits (39), Expect = 3e-11 Identities = 90/107 (84%) Strand = Plus / Plus Query: 188 atcgacgcgcagctgcggctcctcgtccccggcaaggtctccgaggatgacaaactcgtg 247 |||||||||||||||||| |||| | || ||| |||| ||||| ||||| || ||| Sbjct: 111 atcgacgcgcagctgcggatcctggcgcctaagaagctctcggaggacgacaagcttgtg 170 Query: 248 gagtacgacgcccttctcgtcgaccgcttcctcgacatcctccagga 294 ||||||||||| || ||| |||| ||||||||||||||||||||||| Sbjct: 171 gagtacgacgcgctgctcctcgatcgcttcctcgacatcctccagga 217
>emb|X61489.1|ZMPHOPCAR Zea mays pep gene for (C3 type) phosphoenolpyruvate carboxylase Length = 3213 Score = 71.9 bits (36), Expect = 2e-09 Identities = 93/112 (83%) Strand = Plus / Plus Query: 184 gtcgatcgacgcgcagctgcggctcctcgtccccggcaaggtctccgaggatgacaaact 243 |||||||||||||||||||||| | || || || || ||||| || ||||| || || || Sbjct: 136 gtcgatcgacgcgcagctgcggatgctggtgccggggaaggtttcggaggacgataagct 195 Query: 244 cgtggagtacgacgcccttctcgtcgaccgcttcctcgacatcctccaggac 295 | | ||||||||||| || ||| |||| || |||||||||||||| |||||| Sbjct: 196 catcgagtacgacgctctcctcctcgatcggttcctcgacatccttcaggac 247
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 63.9 bits (32), Expect = 4e-07 Identities = 89/108 (82%) Strand = Plus / Minus Query: 184 gtcgatcgacgcgcagctgcggctcctcgtccccggcaaggtctccgaggatgacaaact 243 ||||||||||||||||||||||| || || || | ||| | || ||||| ||||| || Sbjct: 8643100 gtcgatcgacgcgcagctgcggcagctggtgccggcgaagctgtcggaggacgacaagct 8643041 Query: 244 cgtggagtacgacgcccttctcgtcgaccgcttcctcgacatcctcca 291 | | ||||||||||| || ||| ||||||| ||||||||| ||||||| Sbjct: 8643040 catcgagtacgacgcgctcctcctcgaccgattcctcgacgtcctcca 8642993
>dbj|AP005802.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0057D11 Length = 190790 Score = 63.9 bits (32), Expect = 4e-07 Identities = 89/108 (82%) Strand = Plus / Minus Query: 184 gtcgatcgacgcgcagctgcggctcctcgtccccggcaaggtctccgaggatgacaaact 243 ||||||||||||||||||||||| || || || | ||| | || ||||| ||||| || Sbjct: 72896 gtcgatcgacgcgcagctgcggcagctggtgccggcgaagctgtcggaggacgacaagct 72837 Query: 244 cgtggagtacgacgcccttctcgtcgaccgcttcctcgacatcctcca 291 | | ||||||||||| || ||| ||||||| ||||||||| ||||||| Sbjct: 72836 catcgagtacgacgcgctcctcctcgaccgattcctcgacgtcctcca 72789
>gb|AF271162.1| Hydrilla verticillata phosphoenolpyruvate carboxylase isoform 2 mRNA, complete cds Length = 3212 Score = 54.0 bits (27), Expect = 4e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 221 aaggtctccgaggatgacaaactcgtggagtacgacgcccttctcgtcgaccgcttcctc 280 ||||| || ||||| ||||| ||||| ||||||||||| || || | || ||||||||| Sbjct: 137 aaggtgtcggaggacgacaatctcgtcgagtacgacgcactgctgcttgatcgcttcctc 196 Query: 281 gacatcctccaggac 295 |||||||| |||||| Sbjct: 197 gacatcctacaggac 211
>gb|AY112262.1| Zea mays CL19216_1 mRNA sequence Length = 599 Score = 54.0 bits (27), Expect = 4e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 258 cccttctcgtcgaccgcttcctcgacatcctccaggacttgcacggc 304 |||| ||| ||||||| |||||||||||||| |||||| |||||||| Sbjct: 265 ccctgctcctcgaccggttcctcgacatcctacaggacctgcacggc 311
>gb|S60264.1| pepcZm3B=phosphoenolpyruvate carboxylase {5' region} [corn, protoplast, Genomic, 370 nt] Length = 370 Score = 50.1 bits (25), Expect = 0.006 Identities = 58/69 (84%) Strand = Plus / Plus Query: 212 gtccccggcaaggtctccgaggatgacaaactcgtggagtacgacgcccttctcgtcgac 271 ||||| ||||||||||||||||| ||||| ||| | |||||||| || || ||| | || Sbjct: 301 gtcccaggcaaggtctccgaggacgacaagctcatcgagtacgatgcgctgctcattgat 360 Query: 272 cgcttcctc 280 ||||||||| Sbjct: 361 cgcttcctc 369
>emb|X63871.1|ZMPEPC3B Z.mays pepcZm3B mRNA for phosphoenolpyruvate carboxylase, 5' region Length = 183 Score = 50.1 bits (25), Expect = 0.006 Identities = 58/69 (84%) Strand = Plus / Plus Query: 212 gtccccggcaaggtctccgaggatgacaaactcgtggagtacgacgcccttctcgtcgac 271 ||||| ||||||||||||||||| ||||| ||| | |||||||| || || ||| | || Sbjct: 114 gtcccaggcaaggtctccgaggacgacaagctcatcgagtacgatgcgctgctcattgat 173 Query: 272 cgcttcctc 280 ||||||||| Sbjct: 174 cgcttcctc 182
>ref|NM_188368.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1218 Score = 46.1 bits (23), Expect = 0.090 Identities = 41/47 (87%) Strand = Plus / Plus Query: 258 cccttctcgtcgaccgcttcctcgacatcctccaggacttgcacggc 304 |||| ||||||| |||||||||||||||||| ||||| | |||||| Sbjct: 239 ccctcctcgtcgcgcgcttcctcgacatcctcgaggacctccacggc 285
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 46.1 bits (23), Expect = 0.090 Identities = 23/23 (100%) Strand = Plus / Minus Query: 264 tcgtcgaccgcttcctcgacatc 286 ||||||||||||||||||||||| Sbjct: 338338 tcgtcgaccgcttcctcgacatc 338316
>dbj|AP003052.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0016I09 Length = 148517 Score = 46.1 bits (23), Expect = 0.090 Identities = 41/47 (87%) Strand = Plus / Plus Query: 258 cccttctcgtcgaccgcttcctcgacatcctccaggacttgcacggc 304 |||| ||||||| |||||||||||||||||| ||||| | |||||| Sbjct: 102698 ccctcctcgtcgcgcgcttcctcgacatcctcgaggacctccacggc 102744
>dbj|AK066635.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013071A07, full insert sequence Length = 3495 Score = 46.1 bits (23), Expect = 0.090 Identities = 41/47 (87%) Strand = Plus / Plus Query: 258 cccttctcgtcgaccgcttcctcgacatcctccaggacttgcacggc 304 |||| ||||||| |||||||||||||||||| ||||| | |||||| Sbjct: 398 ccctcctcgtcgcgcgcttcctcgacatcctcgaggacctccacggc 444
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 44.1 bits (22), Expect = 0.35 Identities = 25/26 (96%) Strand = Plus / Plus Query: 372 aggcccggatagccgagctcgggagc 397 |||||| ||||||||||||||||||| Sbjct: 3158076 aggccctgatagccgagctcgggagc 3158101
>emb|AM235211.1| Lupinus luteus mRNA for phosphoenolpyruvate carboxylase (PEPC1 gene), clone LUP1 Length = 2904 Score = 42.1 bits (21), Expect = 1.4 Identities = 54/65 (83%) Strand = Plus / Plus Query: 230 gaggatgacaaactcgtggagtacgacgcccttctcgtcgaccgcttcctcgacatcctc 289 |||||||| ||||| || ||||| || || |||||| | || || ||||||||||| ||| Sbjct: 76 gaggatgataaactggttgagtatgatgctcttctcctggatcgattcctcgacattctc 135 Query: 290 cagga 294 ||||| Sbjct: 136 cagga 140
>emb|CT573021.3| Pig DNA sequence from clone XX-BE155F1 on chromosome 14, complete sequence Length = 118416 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 119 acgcaggcgcgtgcgcgcgcc 139 ||||||||||||||||||||| Sbjct: 10104 acgcaggcgcgtgcgcgcgcc 10124
>emb|Z99987.1|MAZ99987 Musa acuminata mRNA for putative PEP carboxylase (clone pBAN EU57) Length = 654 Score = 42.1 bits (21), Expect = 1.4 Identities = 66/81 (81%) Strand = Plus / Plus Query: 214 ccccggcaaggtctccgaggatgacaaactcgtggagtacgacgcccttctcgtcgaccg 273 |||||| ||||| |||||||| ||||| || | ||||| || ||||| ||| | || || Sbjct: 238 ccccgggaaggtatccgaggacgacaagctgatcgagtatgatgccctcctcttggatcg 297 Query: 274 cttcctcgacatcctccagga 294 |||||||||||||| ||||| Sbjct: 298 gttcctcgacatccttcagga 318
>ref|XM_482002.1| Oryza sativa (japonica cultivar-group), mRNA Length = 411 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 32 gcctccaccgttgccgccac 51 |||||||||||||||||||| Sbjct: 112 gcctccaccgttgccgccac 131
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 263 ctcgtcgaccgcttcctcga 282 |||||||||||||||||||| Sbjct: 1559251 ctcgtcgaccgcttcctcga 1559270
>ref|XM_421369.1| PREDICTED: Gallus gallus similar to Delta-like homolog (LOC423459), mRNA Length = 1609 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 67 ggaggatccgcgcgagctgcgcgc 90 |||||||||||||||||| ||||| Sbjct: 411 ggaggatccgcgcgagctccgcgc 434
>ref|XM_959201.1| Neurospora crassa OR74A hypothetical protein (NCU02136.1) partial mRNA Length = 975 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 210 tcgtccccggcaaggtctcc 229 |||||||||||||||||||| Sbjct: 266 tcgtccccggcaaggtctcc 285
>ref|XM_329325.1| Neurospora crassa OR74A hypothetical protein (NCU02136.1) partial mRNA Length = 975 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 210 tcgtccccggcaaggtctcc 229 |||||||||||||||||||| Sbjct: 266 tcgtccccggcaaggtctcc 285
>gb|AC104846.2| Oryza sativa (japonica cultivar-group) chromosome 11 PAC clone P0004C07, complete sequence Length = 135425 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 147 cggcgccctcggggaaggccgcaa 170 ||||||||||||||||||| |||| Sbjct: 62849 cggcgccctcggggaaggctgcaa 62872
>gb|AF271163.1| Hydrilla verticillata phosphoenolpyruvate carboxylase isoform 3 mRNA, complete cds Length = 3218 Score = 40.1 bits (20), Expect = 5.5 Identities = 62/76 (81%) Strand = Plus / Plus Query: 220 caaggtctccgaggatgacaaactcgtggagtacgacgcccttctcgtcgaccgcttcct 279 |||||| || ||||| ||||| ||||| ||||| ||||| || || | || |||||||| Sbjct: 131 caaggtgtcggaggacgacaatctcgtcgagtatgacgcgctgctgcttgatcgcttcct 190 Query: 280 cgacatcctccaggac 295 ||| ||||| |||||| Sbjct: 191 cgagatcctacaggac 206
>gb|AF271161.2| Hydrilla verticillata phosphoenolpyruvate carboxylase isoform 1 mRNA, complete cds Length = 3368 Score = 40.1 bits (20), Expect = 5.5 Identities = 62/76 (81%) Strand = Plus / Plus Query: 220 caaggtctccgaggatgacaaactcgtggagtacgacgcccttctcgtcgaccgcttcct 279 |||||| || ||||| ||||| ||||| ||||| ||||| || || | || |||||||| Sbjct: 140 caaggtgtcggaggacgacaatctcgtcgagtatgacgcgctgctgcttgatcgcttcct 199 Query: 280 cgacatcctccaggac 295 ||| ||||| |||||| Sbjct: 200 cgagatcctacaggac 215
>gb|AC158362.5| Mus musculus BAC clone RP23-214K5 from chromosome 8, complete sequence Length = 201185 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 125 gcgcgtgcgcgcgcccagatggcggcgc 152 |||||||||||||||||| |||||||| Sbjct: 53342 gcgcgtgcgcgcgcccagggggcggcgc 53315
>emb|BX842576.1| Mycobacterium tuberculosis H37Rv complete genome; segment 5/13 Length = 348264 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 263 ctcgtcgaccgcttcctcga 282 |||||||||||||||||||| Sbjct: 176350 ctcgtcgaccgcttcctcga 176369
>emb|BX248338.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 5/14 Length = 299450 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 263 ctcgtcgaccgcttcctcga 282 |||||||||||||||||||| Sbjct: 241472 ctcgtcgaccgcttcctcga 241491
>emb|AJ223496.1|BRJ223496 Brassica juncea mRNA for phosphoenolpyruvate carboxylase Length = 3142 Score = 40.1 bits (20), Expect = 5.5 Identities = 59/72 (81%) Strand = Plus / Plus Query: 233 gatgacaaactcgtggagtacgacgcccttctcgtcgaccgcttcctcgacatcctccag 292 ||||||||||| || ||||| || || ||||| | || || ||||| || ||||||||| Sbjct: 116 gatgacaaacttgttgagtatgatgctcttcttctagatcggttcctagatatcctccag 175 Query: 293 gacttgcacggc 304 || ||||||||| Sbjct: 176 gagttgcacggc 187
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 147 cggcgccctcggggaaggccgcaa 170 ||||||||||||||||||| |||| Sbjct: 24461758 cggcgccctcggggaaggctgcaa 24461781
>dbj|AP005389.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0091C18 Length = 154416 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 32 gcctccaccgttgccgccac 51 |||||||||||||||||||| Sbjct: 28845 gcctccaccgttgccgccac 28864
>dbj|AP004663.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0410E02 Length = 144294 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 32 gcctccaccgttgccgccac 51 |||||||||||||||||||| Sbjct: 140507 gcctccaccgttgccgccac 140526
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 266 gtcgaccgcttcctcgacatcctc 289 |||||||||||| ||||||||||| Sbjct: 299417 gtcgaccgcttcttcgacatcctc 299394
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 147 cggcgccctcggggaaggccgcaa 170 ||||||||||||||||||| |||| Sbjct: 24773427 cggcgccctcggggaaggctgcaa 24773450
>dbj|AP006654.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT31E21, TM0340, complete sequence Length = 120480 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 33 cctccaccgttgccgccacg 52 |||||||||||||||||||| Sbjct: 80707 cctccaccgttgccgccacg 80726
>dbj|AP004929.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT06J16, TM0083, complete sequence Length = 120016 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 33 cctccaccgttgccgccacg 52 |||||||||||||||||||| Sbjct: 63779 cctccaccgttgccgccacg 63760 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,868,262 Number of Sequences: 3902068 Number of extensions: 1868262 Number of successful extensions: 38081 Number of sequences better than 10.0: 78 Number of HSP's better than 10.0 without gapping: 77 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 37451 Number of HSP's gapped (non-prelim): 628 length of query: 413 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 391 effective length of database: 17,147,199,772 effective search space: 6704555110852 effective search space used: 6704555110852 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
