ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl18h04 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC120984.3| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBb0026G02, complete sequence Length = 123472 Score = 67.9 bits (34), Expect = 2e-08 Identities = 46/50 (92%) Strand = Plus / Minus Query: 169 acctggtgttcatcaccggcgagttccagatgatgcaggccttcctcaac 218 |||||||||||||||| | |||||||||||||||||| ||||||||||| Sbjct: 101926 acctggtgttcatcacggatgagttccagatgatgcagtccttcctcaac 101877 Score = 67.9 bits (34), Expect = 2e-08 Identities = 46/50 (92%) Strand = Plus / Minus Query: 169 acctggtgttcatcaccggcgagttccagatgatgcaggccttcctcaac 218 |||||||||||||||| | |||||||||||||||||| ||||||||||| Sbjct: 82144 acctggtgttcatcacggatgagttccagatgatgcagtccttcctcaac 82095 Score = 54.0 bits (27), Expect = 3e-04 Identities = 48/55 (87%) Strand = Plus / Minus Query: 280 acctggcctacgacgtggaggactgcatcgagttcgtcgtccacctcgacaagaa 334 |||| ||||| ||||| ||||||||||||||||| || ||||||| |||||||| Sbjct: 101815 accttgcctaagacgtcgaggactgcatcgagtttgtaatccaccttgacaagaa 101761 Score = 54.0 bits (27), Expect = 3e-04 Identities = 48/55 (87%) Strand = Plus / Minus Query: 280 acctggcctacgacgtggaggactgcatcgagttcgtcgtccacctcgacaagaa 334 |||| ||||| ||||| ||||||||||||||||| || ||||||| |||||||| Sbjct: 82033 accttgcctaagacgtcgaggactgcatcgagtttgtaatccaccttgacaagaa 81979
>gb|AC120887.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0088K21, complete sequence Length = 153239 Score = 67.9 bits (34), Expect = 2e-08 Identities = 46/50 (92%) Strand = Plus / Minus Query: 169 acctggtgttcatcaccggcgagttccagatgatgcaggccttcctcaac 218 |||||||||||||||| | |||||||||||||||||| ||||||||||| Sbjct: 844 acctggtgttcatcacggatgagttccagatgatgcagtccttcctcaac 795 Score = 54.0 bits (27), Expect = 3e-04 Identities = 48/55 (87%) Strand = Plus / Minus Query: 280 acctggcctacgacgtggaggactgcatcgagttcgtcgtccacctcgacaagaa 334 |||| ||||| ||||| ||||||||||||||||| || ||||||| |||||||| Sbjct: 733 accttgcctaagacgtcgaggactgcatcgagtttgtaatccaccttgacaagaa 679
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 67.9 bits (34), Expect = 2e-08 Identities = 46/50 (92%) Strand = Plus / Minus Query: 169 acctggtgttcatcaccggcgagttccagatgatgcaggccttcctcaac 218 |||||||||||||||| | |||||||||||||||||| ||||||||||| Sbjct: 22741126 acctggtgttcatcacggatgagttccagatgatgcagtccttcctcaac 22741077 Score = 67.9 bits (34), Expect = 2e-08 Identities = 46/50 (92%) Strand = Plus / Minus Query: 169 acctggtgttcatcaccggcgagttccagatgatgcaggccttcctcaac 218 |||||||||||||||| | |||||||||||||||||| ||||||||||| Sbjct: 22721344 acctggtgttcatcacggatgagttccagatgatgcagtccttcctcaac 22721295 Score = 54.0 bits (27), Expect = 3e-04 Identities = 48/55 (87%) Strand = Plus / Minus Query: 280 acctggcctacgacgtggaggactgcatcgagttcgtcgtccacctcgacaagaa 334 |||| ||||| ||||| ||||||||||||||||| || ||||||| |||||||| Sbjct: 22741015 accttgcctaagacgtcgaggactgcatcgagtttgtaatccaccttgacaagaa 22740961 Score = 54.0 bits (27), Expect = 3e-04 Identities = 48/55 (87%) Strand = Plus / Minus Query: 280 acctggcctacgacgtggaggactgcatcgagttcgtcgtccacctcgacaagaa 334 |||| ||||| ||||| ||||||||||||||||| || ||||||| |||||||| Sbjct: 22721233 accttgcctaagacgtcgaggactgcatcgagtttgtaatccaccttgacaagaa 22721179 Score = 54.0 bits (27), Expect = 3e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 276 cgcgacctggcctacgacgtggaggactgcatcga 310 ||||| |||||||||||| |||||||||||||||| Sbjct: 15213314 cgcgagctggcctacgacatggaggactgcatcga 15213280 Score = 44.1 bits (22), Expect = 0.33 Identities = 37/42 (88%) Strand = Plus / Plus Query: 269 gcagatccgcgacctggcctacgacgtggaggactgcatcga 310 ||||||||| ||| | ||||| ||||| |||||||||||||| Sbjct: 27109194 gcagatccgagacgtcgcctatgacgttgaggactgcatcga 27109235 Score = 44.1 bits (22), Expect = 0.33 Identities = 37/42 (88%) Strand = Plus / Plus Query: 269 gcagatccgcgacctggcctacgacgtggaggactgcatcga 310 ||||||||||||| | |||||||| | |||||||||||||| Sbjct: 27018177 gcagatccgcgacgtcacctacgacatcgaggactgcatcga 27018218 Score = 44.1 bits (22), Expect = 0.33 Identities = 37/42 (88%) Strand = Plus / Plus Query: 269 gcagatccgcgacctggcctacgacgtggaggactgcatcga 310 |||| |||||||| | ||||||||| ||||||||||| |||| Sbjct: 16218654 gcaggtccgcgacatcgcctacgacatggaggactgcgtcga 16218695 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 282 ctggcctacgacgtggaggactgcatcga 310 |||||||||||||| ||||| |||||||| Sbjct: 19683442 ctggcctacgacgtcgaggattgcatcga 19683470
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 67.9 bits (34), Expect = 2e-08 Identities = 46/50 (92%) Strand = Plus / Minus Query: 169 acctggtgttcatcaccggcgagttccagatgatgcaggccttcctcaac 218 |||||||||||||||| | |||||||||||||||||| ||||||||||| Sbjct: 23051037 acctggtgttcatcacggatgagttccagatgatgcagtccttcctcaac 23050988 Score = 67.9 bits (34), Expect = 2e-08 Identities = 46/50 (92%) Strand = Plus / Minus Query: 169 acctggtgttcatcaccggcgagttccagatgatgcaggccttcctcaac 218 |||||||||||||||| | |||||||||||||||||| ||||||||||| Sbjct: 23031255 acctggtgttcatcacggatgagttccagatgatgcagtccttcctcaac 23031206 Score = 54.0 bits (27), Expect = 3e-04 Identities = 48/55 (87%) Strand = Plus / Minus Query: 280 acctggcctacgacgtggaggactgcatcgagttcgtcgtccacctcgacaagaa 334 |||| ||||| ||||| ||||||||||||||||| || ||||||| |||||||| Sbjct: 23050926 accttgcctaagacgtcgaggactgcatcgagtttgtaatccaccttgacaagaa 23050872 Score = 54.0 bits (27), Expect = 3e-04 Identities = 48/55 (87%) Strand = Plus / Minus Query: 280 acctggcctacgacgtggaggactgcatcgagttcgtcgtccacctcgacaagaa 334 |||| ||||| ||||| ||||||||||||||||| || ||||||| |||||||| Sbjct: 23031144 accttgcctaagacgtcgaggactgcatcgagtttgtaatccaccttgacaagaa 23031090 Score = 54.0 bits (27), Expect = 3e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 276 cgcgacctggcctacgacgtggaggactgcatcga 310 ||||| |||||||||||| |||||||||||||||| Sbjct: 15294813 cgcgagctggcctacgacatggaggactgcatcga 15294779 Score = 44.1 bits (22), Expect = 0.33 Identities = 37/42 (88%) Strand = Plus / Plus Query: 269 gcagatccgcgacctggcctacgacgtggaggactgcatcga 310 ||||||||| ||| | ||||| ||||| |||||||||||||| Sbjct: 27436247 gcagatccgagacgtcgcctatgacgttgaggactgcatcga 27436288 Score = 44.1 bits (22), Expect = 0.33 Identities = 37/42 (88%) Strand = Plus / Plus Query: 269 gcagatccgcgacctggcctacgacgtggaggactgcatcga 310 ||||||||||||| | |||||||| | |||||||||||||| Sbjct: 27345230 gcagatccgcgacgtcacctacgacatcgaggactgcatcga 27345271 Score = 44.1 bits (22), Expect = 0.33 Identities = 37/42 (88%) Strand = Plus / Plus Query: 269 gcagatccgcgacctggcctacgacgtggaggactgcatcga 310 |||| |||||||| | ||||||||| ||||||||||| |||| Sbjct: 16308636 gcaggtccgcgacatcgcctacgacatggaggactgcgtcga 16308677 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 282 ctggcctacgacgtggaggactgcatcga 310 |||||||||||||| ||||| |||||||| Sbjct: 19969299 ctggcctacgacgtcgaggattgcatcga 19969327
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 60.0 bits (30), Expect = 5e-06 Identities = 45/50 (90%) Strand = Plus / Minus Query: 256 ggacctgggtgcggcagatccgcgacctggcctacgacgtggaggactgc 305 ||||||||||| |||| |||||||| ||||||||||||| ||||||||| Sbjct: 22919787 ggacctgggtgaagcaggtccgcgacgtggcctacgacgtcgaggactgc 22919738
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 60.0 bits (30), Expect = 5e-06 Identities = 45/50 (90%) Strand = Plus / Minus Query: 256 ggacctgggtgcggcagatccgcgacctggcctacgacgtggaggactgc 305 ||||||||||| |||| |||||||| ||||||||||||| ||||||||| Sbjct: 22847978 ggacctgggtgaagcaggtccgcgacgtggcctacgacgtcgaggactgc 22847929
>emb|AL935072.4|CNS08CCO Oryza sativa chromosome 12, . BAC OSJNBa0028L05 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 155568 Score = 60.0 bits (30), Expect = 5e-06 Identities = 45/50 (90%) Strand = Plus / Minus Query: 256 ggacctgggtgcggcagatccgcgacctggcctacgacgtggaggactgc 305 ||||||||||| |||| |||||||| ||||||||||||| ||||||||| Sbjct: 29064 ggacctgggtgaagcaggtccgcgacgtggcctacgacgtcgaggactgc 29015
>emb|AL935070.3|CNS08CCM Oryza sativa chromosome 12, . BAC OSJNBa0040P10 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 148705 Score = 60.0 bits (30), Expect = 5e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 256 ggacctgggtgcggcagatccgcgacctggcctacgacgtggaggactgc 305 ||||||||||| |||| |||||||| ||||||||||||| ||||||||| Sbjct: 37057 ggacctgggtgaagcaggtccgcgacgtggcctacgacgtcgaggactgc 37106
>gb|AC137113.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0006N14, complete sequence Length = 155730 Score = 54.0 bits (27), Expect = 3e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 276 cgcgacctggcctacgacgtggaggactgcatcga 310 ||||| |||||||||||| |||||||||||||||| Sbjct: 68947 cgcgagctggcctacgacatggaggactgcatcga 68913
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 48.1 bits (24), Expect = 0.021 Identities = 45/52 (86%) Strand = Plus / Minus Query: 252 gtgcggacctgggtgcggcagatccgcgacctggcctacgacgtggaggact 303 |||||||| |||||| |||| | |||||||| ||||||||||| ||||||| Sbjct: 19872518 gtgcggacgtgggtgaagcaggtgcgcgacctcgcctacgacgtcgaggact 19872467 Score = 44.1 bits (22), Expect = 0.33 Identities = 28/30 (93%) Strand = Plus / Minus Query: 276 cgcgacctggcctacgacgtggaggactgc 305 |||||||| ||||||||||| ||||||||| Sbjct: 19866702 cgcgacctcgcctacgacgtcgaggactgc 19866673
>dbj|AP005735.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBb0034B12 Length = 124083 Score = 48.1 bits (24), Expect = 0.021 Identities = 45/52 (86%) Strand = Plus / Minus Query: 252 gtgcggacctgggtgcggcagatccgcgacctggcctacgacgtggaggact 303 |||||||| |||||| |||| | |||||||| ||||||||||| ||||||| Sbjct: 96958 gtgcggacgtgggtgaagcaggtgcgcgacctcgcctacgacgtcgaggact 96907 Score = 44.1 bits (22), Expect = 0.33 Identities = 28/30 (93%) Strand = Plus / Minus Query: 276 cgcgacctggcctacgacgtggaggactgc 305 |||||||| ||||||||||| ||||||||| Sbjct: 91142 cgcgacctcgcctacgacgtcgaggactgc 91113
>ref|NM_196109.1| Oryza sativa (japonica cultivar-group) putative disease resistance protein (OJ1003C07.2), mRNA Length = 2997 Score = 46.1 bits (23), Expect = 0.082 Identities = 32/35 (91%) Strand = Plus / Plus Query: 276 cgcgacctggcctacgacgtggaggactgcatcga 310 ||||||||||||| |||| ||||||||||| |||| Sbjct: 217 cgcgacctggcctgcgacatggaggactgcgtcga 251
>gb|AC113335.1| Genomic sequence for Oryza sativa (japonica cultivar-group) cultivar Nipponbare clone OJ1003C07, from chromosome 10, complete sequence Length = 115188 Score = 46.1 bits (23), Expect = 0.082 Identities = 32/35 (91%) Strand = Plus / Minus Query: 276 cgcgacctggcctacgacgtggaggactgcatcga 310 ||||||||||||| |||| ||||||||||| |||| Sbjct: 11822 cgcgacctggcctgcgacatggaggactgcgtcga 11788
>gb|AC107314.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare clone OJ1208D02 from chromosome 10, complete sequence Length = 120132 Score = 46.1 bits (23), Expect = 0.082 Identities = 32/35 (91%) Strand = Plus / Plus Query: 276 cgcgacctggcctacgacgtggaggactgcatcga 310 ||||||||||||| |||| ||||||||||| |||| Sbjct: 15355 cgcgacctggcctgcgacatggaggactgcgtcga 15389
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 46.1 bits (23), Expect = 0.082 Identities = 32/35 (91%) Strand = Plus / Plus Query: 276 cgcgacctggcctacgacgtggaggactgcatcga 310 ||||||||||||| |||| ||||||||||| |||| Sbjct: 11147235 cgcgacctggcctgcgacatggaggactgcgtcga 11147269
>dbj|AK067524.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013108I15, full insert sequence Length = 3763 Score = 46.1 bits (23), Expect = 0.082 Identities = 32/35 (91%) Strand = Plus / Plus Query: 276 cgcgacctggcctacgacgtggaggactgcatcga 310 ||||||||||||| |||| ||||||||||| |||| Sbjct: 334 cgcgacctggcctgcgacatggaggactgcgtcga 368
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 46.1 bits (23), Expect = 0.082 Identities = 32/35 (91%) Strand = Plus / Plus Query: 276 cgcgacctggcctacgacgtggaggactgcatcga 310 ||||||||||||| |||| ||||||||||| |||| Sbjct: 11153675 cgcgacctggcctgcgacatggaggactgcgtcga 11153709
>ref|XM_474832.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 3516 Score = 44.1 bits (22), Expect = 0.33 Identities = 34/38 (89%) Strand = Plus / Plus Query: 189 gagttccagatgatgcaggccttcctcaacaacgccga 226 |||||| ||||||||||| |||||||||| | |||||| Sbjct: 130 gagttcgagatgatgcagtccttcctcaagaccgccga 167
>gb|AC114012.5| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0079H11, complete sequence Length = 143925 Score = 44.1 bits (22), Expect = 0.33 Identities = 37/42 (88%) Strand = Plus / Plus Query: 269 gcagatccgcgacctggcctacgacgtggaggactgcatcga 310 |||| |||||||| | ||||||||| ||||||||||| |||| Sbjct: 83865 gcaggtccgcgacatcgcctacgacatggaggactgcgtcga 83906
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 44.1 bits (22), Expect = 0.33 Identities = 37/42 (88%) Strand = Plus / Plus Query: 269 gcagatccgcgacctggcctacgacgtggaggactgcatcga 310 |||| ||||||| || ||||||||| ||||||||||||||| Sbjct: 10205396 gcagctccgcgagctcgcctacgactcggaggactgcatcga 10205437
>gb|AC133216.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBb0049B20, complete sequence Length = 131337 Score = 44.1 bits (22), Expect = 0.33 Identities = 37/42 (88%) Strand = Plus / Plus Query: 269 gcagatccgcgacctggcctacgacgtggaggactgcatcga 310 ||||||||||||| | |||||||| | |||||||||||||| Sbjct: 71465 gcagatccgcgacgtcacctacgacatcgaggactgcatcga 71506
>emb|AL606590.3|OSJN00031 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0052O21, complete sequence Length = 166475 Score = 44.1 bits (22), Expect = 0.33 Identities = 34/38 (89%) Strand = Plus / Plus Query: 189 gagttccagatgatgcaggccttcctcaacaacgccga 226 |||||| ||||||||||| |||||||||| | |||||| Sbjct: 68181 gagttcgagatgatgcagtccttcctcaagaccgccga 68218
>gb|AC145395.3| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0047M04, complete sequence Length = 109523 Score = 44.1 bits (22), Expect = 0.33 Identities = 37/42 (88%) Strand = Plus / Plus Query: 269 gcagatccgcgacctggcctacgacgtggaggactgcatcga 310 ||||||||| ||| | ||||| ||||| |||||||||||||| Sbjct: 60247 gcagatccgagacgtcgcctatgacgttgaggactgcatcga 60288
>gb|AC137072.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0045E22, from chromosome 3, complete sequence Length = 160920 Score = 44.1 bits (22), Expect = 0.33 Identities = 37/42 (88%) Strand = Plus / Plus Query: 269 gcagatccgcgacctggcctacgacgtggaggactgcatcga 310 |||| ||||||| || ||||||||| ||||||||||||||| Sbjct: 66809 gcagctccgcgagctcgcctacgactcggaggactgcatcga 66850
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 44.1 bits (22), Expect = 0.33 Identities = 34/38 (89%) Strand = Plus / Plus Query: 189 gagttccagatgatgcaggccttcctcaacaacgccga 226 |||||| ||||||||||| |||||||||| | |||||| Sbjct: 7046990 gagttcgagatgatgcagtccttcctcaagaccgccga 7047027
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 44.1 bits (22), Expect = 0.33 Identities = 37/42 (88%) Strand = Plus / Plus Query: 269 gcagatccgcgacctggcctacgacgtggaggactgcatcga 310 |||| ||||||| || ||||||||| ||||||||||||||| Sbjct: 10203497 gcagctccgcgagctcgcctacgactcggaggactgcatcga 10203538
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 44.1 bits (22), Expect = 0.33 Identities = 37/42 (88%) Strand = Plus / Plus Query: 269 gcagatccgcgacctggcctacgacgtggaggactgcatcga 310 |||| ||||||| || ||||||||| ||||||||||||||| Sbjct: 35723070 gcagctccgcgagctcgcctacgactcggaggactgcatcga 35723111 Score = 40.1 bits (20), Expect = 5.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 283 tggcctacgacgtggaggactgcatcga 310 |||| ||||||| ||||||||||||||| Sbjct: 9313527 tggcgtacgacgcggaggactgcatcga 9313554 Score = 40.1 bits (20), Expect = 5.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 283 tggcctacgacgtggaggactgcatcga 310 |||| ||||||| ||||||||||||||| Sbjct: 9308429 tggcgtacgacgcggaggactgcatcga 9308402 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 311 gttcgtcgtccacctcgacaagaa 334 |||||||||| ||||||||||||| Sbjct: 2814349 gttcgtcgtcgacctcgacaagaa 2814326
>dbj|AP004366.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0460C04 Length = 189043 Score = 44.1 bits (22), Expect = 0.33 Identities = 37/42 (88%) Strand = Plus / Plus Query: 269 gcagatccgcgacctggcctacgacgtggaggactgcatcga 310 |||| ||||||| || ||||||||| ||||||||||||||| Sbjct: 126407 gcagctccgcgagctcgcctacgactcggaggactgcatcga 126448
>dbj|AP007253.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0004O05 Length = 140513 Score = 44.1 bits (22), Expect = 0.33 Identities = 37/42 (88%) Strand = Plus / Minus Query: 269 gcagatccgcgacctggcctacgacgtggaggactgcatcga 310 |||| ||||||| || ||||||||| ||||||||||||||| Sbjct: 92758 gcagctccgcgagctcgcctacgactcggaggactgcatcga 92717
>dbj|AK119460.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-133-E09, full insert sequence Length = 3382 Score = 44.1 bits (22), Expect = 0.33 Identities = 28/30 (93%) Strand = Plus / Plus Query: 276 cgcgacctggcctacgacgtggaggactgc 305 |||||||| ||||||||||| ||||||||| Sbjct: 241 cgcgacctcgcctacgacgtcgaggactgc 270
>dbj|AK108692.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-149-D06, full insert sequence Length = 2265 Score = 44.1 bits (22), Expect = 0.33 Identities = 37/42 (88%) Strand = Plus / Plus Query: 269 gcagatccgcgacctggcctacgacgtggaggactgcatcga 310 ||||||||| ||| | ||||| ||||| |||||||||||||| Sbjct: 236 gcagatccgagacgtcgcctatgacgttgaggactgcatcga 277
>dbj|AK103659.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033135H03, full insert sequence Length = 2323 Score = 44.1 bits (22), Expect = 0.33 Identities = 37/42 (88%) Strand = Plus / Plus Query: 269 gcagatccgcgacctggcctacgacgtggaggactgcatcga 310 ||||||||||||| | |||||||| | |||||||||||||| Sbjct: 548 gcagatccgcgacgtcacctacgacatcgaggactgcatcga 589
>dbj|AK100778.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023120F15, full insert sequence Length = 4121 Score = 44.1 bits (22), Expect = 0.33 Identities = 28/30 (93%) Strand = Plus / Plus Query: 276 cgcgacctggcctacgacgtggaggactgc 305 |||||||| ||||||||||| ||||||||| Sbjct: 237 cgcgacctcgcctacgacgtcgaggactgc 266
>dbj|AK073759.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033065D18, full insert sequence Length = 3778 Score = 44.1 bits (22), Expect = 0.33 Identities = 37/42 (88%) Strand = Plus / Plus Query: 269 gcagatccgcgacctggcctacgacgtggaggactgcatcga 310 ||||||||| ||| | ||||| ||||| |||||||||||||| Sbjct: 605 gcagatccgagacgtcgcctatgacgttgaggactgcatcga 646
>dbj|AK064142.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-103-B04, full insert sequence Length = 2789 Score = 44.1 bits (22), Expect = 0.33 Identities = 37/42 (88%) Strand = Plus / Plus Query: 269 gcagatccgcgacctggcctacgacgtggaggactgcatcga 310 |||| |||||||| | ||||||||| ||||||||||| |||| Sbjct: 343 gcaggtccgcgacatcgcctacgacatggaggactgcgtcga 384
>ref|XM_523442.1| PREDICTED: Pan troglodytes membrane-bound transcription factor site-1 protease (LOC468050), mRNA Length = 4281 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 319 tccacctcgacaagaacaaca 339 ||||||||||||||||||||| Sbjct: 488 tccacctcgacaagaacaaca 468
>ref|XM_483560.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3618 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 188 cgagttccagatgatgcaggccttcctca 216 |||| |||| ||||||||||||||||||| Sbjct: 129 cgagctccatatgatgcaggccttcctca 157
>ref|NM_186625.2| Oryza sativa (japonica cultivar-group), mRNA Length = 654 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 124 tggcgatcgaggaggagtccaagct 148 |||||||||||||||||| |||||| Sbjct: 343 tggcgatcgaggaggagttcaagct 367
>ref|XM_507357.1| PREDICTED Oryza sativa (japonica cultivar-group), P0592C06.117 mRNA Length = 664 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 124 tggcgatcgaggaggagtccaagct 148 |||||||||||||||||| |||||| Sbjct: 345 tggcgatcgaggaggagttcaagct 369
>ref|XM_506226.2| PREDICTED Oryza sativa (japonica cultivar-group), P0592C06.117 mRNA Length = 689 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 124 tggcgatcgaggaggagtccaagct 148 |||||||||||||||||| |||||| Sbjct: 370 tggcgatcgaggaggagttcaagct 394
>gb|AC150698.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0072P10, complete sequence Length = 147540 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 282 ctggcctacgacgtggaggactgcatcga 310 |||||||||||||| ||||| |||||||| Sbjct: 39021 ctggcctacgacgtcgaggattgcatcga 39049
>gb|AC134624.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0041I05, complete sequence Length = 148785 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 282 ctggcctacgacgtggaggactgcatcga 310 |||||||||||||| ||||| |||||||| Sbjct: 88937 ctggcctacgacgtcgaggattgcatcga 88965
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 203 gcaggccttcctcaacaacgccgac 227 |||||||||||||| |||||||||| Sbjct: 2317927 gcaggccttcctcaccaacgccgac 2317951
>ref|XM_590381.2| PREDICTED: Bos taurus similar to cofactor of BRCA1 (LOC512799), mRNA Length = 3390 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 285 gcctacgacgtggaggactgc 305 ||||||||||||||||||||| Sbjct: 346 gcctacgacgtggaggactgc 366
>emb|AM085146.1| Magnetospirillum gryphiswaldense magnetosome island Length = 130000 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 206 ggccttcctcaacaacgccga 226 ||||||||||||||||||||| Sbjct: 89264 ggccttcctcaacaacgccga 89284
>gb|AY336988.1| Oryza sativa (japonica cultivar-group) disease related protein 1 mRNA, complete cds Length = 3900 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 188 cgagttccagatgatgcaggccttcctca 216 |||| |||| ||||||||||||||||||| Sbjct: 240 cgagctccatatgatgcaggccttcctca 268
>gb|AY224456.1| Oryza sativa (japonica cultivar-group) isolate 23479 acyl carrier protein-like protein mRNA, complete cds Length = 396 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 124 tggcgatcgaggaggagtccaagct 148 |||||||||||||||||| |||||| Sbjct: 287 tggcgatcgaggaggagttcaagct 311
>gb|BC109811.1| Bos taurus cDNA clone IMAGE:8043320 Length = 871 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 285 gcctacgacgtggaggactgc 305 ||||||||||||||||||||| Sbjct: 416 gcctacgacgtggaggactgc 436
>ref|XM_396149.2| PREDICTED: Apis mellifera similar to tetraspanin D76 (LOC412694), mRNA Length = 1618 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1 atcttgaagagcataagctgc 21 ||||||||||||||||||||| Sbjct: 386 atcttgaagagcataagctgc 366
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 188 cgagttccagatgatgcaggccttcctca 216 |||| |||| ||||||||||||||||||| Sbjct: 26970759 cgagctccatatgatgcaggccttcctca 26970731
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 124 tggcgatcgaggaggagtccaagct 148 |||||||||||||||||| |||||| Sbjct: 6831582 tggcgatcgaggaggagttcaagct 6831606
>gb|AE004495.1| Pseudomonas aeruginosa PAO1, section 56 of 529 of the complete genome Length = 9971 Score = 42.1 bits (21), Expect = 1.3 Identities = 30/33 (90%) Strand = Plus / Minus Query: 259 cctgggtgcggcagatccgcgacctggcctacg 291 ||||| ||||||||||||||||| |||||||| Sbjct: 5880 cctggctgcggcagatccgcgacgaggcctacg 5848
>gb|AC040169.7| Homo sapiens chromosome 16 clone RP11-505K9, complete sequence Length = 212596 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 319 tccacctcgacaagaacaaca 339 ||||||||||||||||||||| Sbjct: 160417 tccacctcgacaagaacaaca 160437
>dbj|AP004592.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0666G10 Length = 150761 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 188 cgagttccagatgatgcaggccttcctca 216 |||| |||| ||||||||||||||||||| Sbjct: 72159 cgagctccatatgatgcaggccttcctca 72131
>dbj|AP005197.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0592C06 Length = 160071 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 124 tggcgatcgaggaggagtccaagct 148 |||||||||||||||||| |||||| Sbjct: 125716 tggcgatcgaggaggagttcaagct 125740
>dbj|AK103131.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033120B22, full insert sequence Length = 655 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 124 tggcgatcgaggaggagtccaagct 148 |||||||||||||||||| |||||| Sbjct: 343 tggcgatcgaggaggagttcaagct 367
>dbj|AK100823.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023122I22, full insert sequence Length = 689 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 124 tggcgatcgaggaggagtccaagct 148 |||||||||||||||||| |||||| Sbjct: 370 tggcgatcgaggaggagttcaagct 394
>dbj|AK060442.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-011-E04, full insert sequence Length = 664 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 124 tggcgatcgaggaggagtccaagct 148 |||||||||||||||||| |||||| Sbjct: 345 tggcgatcgaggaggagttcaagct 369
>ref|XM_550171.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1227 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 311 gttcgtcgtccacctcgacaagaa 334 |||||||||| ||||||||||||| Sbjct: 1053 gttcgtcgtcgacctcgacaagaa 1076
>ref|NM_188044.1| Oryza sativa (japonica cultivar-group), Ozsa8464 predicted mRNA Length = 3036 Score = 40.1 bits (20), Expect = 5.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 283 tggcctacgacgtggaggactgcatcga 310 |||| ||||||| ||||||||||||||| Sbjct: 230 tggcgtacgacgcggaggactgcatcga 257
>ref|NM_188043.1| Oryza sativa (japonica cultivar-group), Ozsa8463 predicted mRNA Length = 4215 Score = 40.1 bits (20), Expect = 5.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 283 tggcctacgacgtggaggactgcatcga 310 |||| ||||||| ||||||||||||||| Sbjct: 257 tggcgtacgacgcggaggactgcatcga 284
>gb|DQ232586.1| Rhodobacter sphaeroides 2.4.1 plasmid A, partial sequence Length = 114045 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 104 ggcgctgaccaaggcccaggtggc 127 ||||||||||| |||||||||||| Sbjct: 23857 ggcgctgaccacggcccaggtggc 23880
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 362 ccccgtgagctggctcctcg 381 |||||||||||||||||||| Sbjct: 1611205 ccccgtgagctggctcctcg 1611186
>emb|CT009677.9| Mouse DNA sequence from clone CH29-485N6 on chromosome 17, complete sequence Length = 183118 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 17 gctgcttgactgactgtaagcttg 40 |||||| ||||||||||||||||| Sbjct: 162160 gctgctggactgactgtaagcttg 162183
>gb|AC131799.3| Mus musculus BAC clone RP24-535N4 from chromosome 17, complete sequence Length = 120764 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 17 gctgcttgactgactgtaagcttg 40 |||||| ||||||||||||||||| Sbjct: 62739 gctgctggactgactgtaagcttg 62762
>emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB Length = 1683333 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 265 tgcggcagatccgcgacctg 284 |||||||||||||||||||| Sbjct: 252710 tgcggcagatccgcgacctg 252729
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 162 cagcgcaacctggtgttcat 181 |||||||||||||||||||| Sbjct: 5416341 cagcgcaacctggtgttcat 5416360
>gb|AC078817.18| Homo sapiens 12 BAC RP11-244J10 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 172802 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 10 agcataagctgcttgactga 29 |||||||||||||||||||| Sbjct: 163246 agcataagctgcttgactga 163265
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 167 caacctggtgttcatcaccg 186 |||||||||||||||||||| Sbjct: 4754967 caacctggtgttcatcaccg 4754986
>gb|AF194331.1|AF194331 Myxococcus xanthus glycosyl transferase homolog WbgB (wbgB) gene, complete cds Length = 2871 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 162 cagcgcaacctggtgttcatcacc 185 |||||||||||||||||| ||||| Sbjct: 1005 cagcgcaacctggtgttcgtcacc 1028
>dbj|AP001073.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0667A10 Length = 152237 Score = 40.1 bits (20), Expect = 5.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 283 tggcctacgacgtggaggactgcatcga 310 |||| ||||||| ||||||||||||||| Sbjct: 90121 tggcgtacgacgcggaggactgcatcga 90148 Score = 40.1 bits (20), Expect = 5.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 283 tggcctacgacgtggaggactgcatcga 310 |||| ||||||| ||||||||||||||| Sbjct: 85023 tggcgtacgacgcggaggactgcatcga 84996
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 310 agttcgtcgtccacctcgac 329 |||||||||||||||||||| Sbjct: 3672098 agttcgtcgtccacctcgac 3672079
>dbj|AP003045.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0030H07 Length = 168253 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 311 gttcgtcgtccacctcgacaagaa 334 |||||||||| ||||||||||||| Sbjct: 21347 gttcgtcgtcgacctcgacaagaa 21324
>dbj|AP002522.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0009G03 Length = 163526 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 311 gttcgtcgtccacctcgacaagaa 334 |||||||||| ||||||||||||| Sbjct: 120026 gttcgtcgtcgacctcgacaagaa 120003
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 caggtggcgatcgaggagga 139 |||||||||||||||||||| Sbjct: 2283956 caggtggcgatcgaggagga 2283937 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,366,477 Number of Sequences: 3902068 Number of extensions: 2366477 Number of successful extensions: 47194 Number of sequences better than 10.0: 75 Number of HSP's better than 10.0 without gapping: 81 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 46410 Number of HSP's gapped (non-prelim): 784 length of query: 381 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 359 effective length of database: 17,147,199,772 effective search space: 6155844718148 effective search space used: 6155844718148 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
