>TRXB_ASHGO (Q75CM8) Thioredoxin reductase (EC 1.8.1.9)|
          Length = 319

 Score = 32.0 bits (71), Expect = 0.61
 Identities = 20/76 (26%), Positives = 33/76 (43%)
 Frame = -3

Query: 401 NEVSVRAKLKSTCNFGTKSR*IQSEVCSVDIAIEPLKCVTIFDLDDDVPXXXXXXXXXXX 222
           +++  R K +S   FGT+   +   V  VD++  P K  T F+ D++             
Sbjct: 65  SDLMERMKAQSV-KFGTEV--VTETVAKVDLSARPFKLWTEFNEDEEPTTTDAIILATGA 121

Query: 221 XXAQAGHGGRETLWER 174
              + G  G ET W+R
Sbjct: 122 SAKRLGLPGEETYWQR 137

>MUCDL_HUMAN (Q9HBB8) Mucin and cadherin-like protein precursor|
           (Mu-protocadherin)
          Length = 845

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 17/55 (30%), Positives = 22/55 (40%)
 Frame = -1

Query: 268 TTMSQGSGPDARPSNGGALRPDMAAEKPCGRGGGRSDRVEERVNPRGDEVSGRKP 104
           +T S G G    P +G  LRP   +  P G  G  +    +   P GD     KP
Sbjct: 492 STTSSGGGTGPHPPSGTTLRPP-TSSTPGGSPGAENSTSHQPATPGGDTAQTPKP 545

>METW_YEAST (Q12198) Putative cystathionine gamma-synthase YLL058W (EC|
           2.5.1.48) (O-succinylhomoserine (thiol)-lyase)
          Length = 575

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
 Frame = +3

Query: 285 DTLKRFNGYVNGTHFTLNLS----ALRSKIASAFKFGPDADFI 401
           D+LK F G  NGT+FTL       A  S++    KFG D + I
Sbjct: 502 DSLKVFKGPSNGTNFTLACPYVHLAHHSELEEVSKFGADPNII 544

>CACB2_MOUSE (Q8CC27) Voltage-dependent L-type calcium channel beta-2 subunit|
           (CAB2) (Calcium channel, voltage-dependent, beta 2
           subunit)
          Length = 655

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = -1

Query: 295 LSVSPYLTLTTMSQGSGPDARPSNGGALRPDMAAEKPC 182
           L +SP  TL + SQGS  D RP          A E+PC
Sbjct: 482 LPLSP--TLASNSQGSQGDQRPDRSAPRSASQAEEEPC 517

>Y126_METJA (Q57590) Hypothetical protein MJ0126|
          Length = 98

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
 Frame = -3

Query: 404 ENEVSVRAKLKSTCNFGTKSR*IQSEVCSVDIAI---EPLKCVTIFDLDD 264
           + E+  + K+KS   FG+ +R  Q+E   +DI I   EP+  + + +L++
Sbjct: 15  KKELKEKYKVKSIAIFGSYARNEQTETSDIDILIDYYEPISLLKLIELEN 64

>ADA20_HUMAN (O43506) ADAM 20 precursor (EC 3.4.24.-) (A disintegrin and|
           metalloproteinase domain 20)
          Length = 726

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 311 CQRNTLHFESICSSFQNCKCF*VW 382
           CQR T +   IC++ Q+C C   W
Sbjct: 635 CQRKTCNMRGICNNKQHCHCNHEW 658

>CTDP1_HUMAN (Q9Y5B0) RNA polymerase II subunit A C-terminal domain phosphatase|
           (EC 3.1.3.16) (TFIIF-associating CTD phosphatase)
          Length = 961

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -1

Query: 244 PDARPSNGGALRPDMAAEKPCGRGGGRSDRVEERVNPRGDEVSG 113
           PD  P  GG  + +   +  CG G G +DR E     +  E+SG
Sbjct: 524 PDKEPELGG--QEEGERDGLCGLGNGCADRKEAETESQNSELSG 565

>RS5_SYNPX (Q7U4I4) 30S ribosomal protein S5|
          Length = 215

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = -1

Query: 271 LTTMSQGSGPDARPSNGGALRPDMAAEKPCGRGGGRSDRVEERVNPRGD 125
           +T  S  S P+A P            ++   RGGGR +R + R   RGD
Sbjct: 1   MTDSSPQSNPNAVPGAADVPAAAEGQQQEQRRGGGRGERGDRRGGRRGD 49


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,634,517
Number of Sequences: 219361
Number of extensions: 794133
Number of successful extensions: 2580
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2580
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2278320915
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)