ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl18g10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|BC056585.1| Danio rerio wu:fl05f04, mRNA (cDNA clone IMAGE:67... 40 3.8
2emb|AL445240.8| Human DNA sequence from clone RP11-242A15 on chr... 40 3.8
3dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 40 3.8
4ref|XM_695218.1| PREDICTED: Danio rerio similar to Wu:fl05f04 pr... 40 3.8
5emb|BX323602.7| Zebrafish DNA sequence from clone RP71-61H23, co... 40 3.8
6dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.8
7dbj|AP004723.4| Oryza sativa (japonica cultivar-group) genomic D... 40 3.8
8gb|AC104898.9| Mus musculus chromosome 8, clone RP23-300I4, comp... 40 3.8
9emb|AL805938.4| Mouse DNA sequence from clone RP23-248L9 on chro... 40 3.8

>gb|BC056585.1| Danio rerio wu:fl05f04, mRNA (cDNA clone IMAGE:6793027), partial cds
          Length = 1704

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 86   accctcacacccgtcctctt 105
            ||||||||||||||||||||
Sbjct: 1124 accctcacacccgtcctctt 1143



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>emb|AL445240.8| Human DNA sequence from clone RP11-242A15 on chromosome 10 Contains the
             5' end of a novel gene, complete sequence
          Length = 152898

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 247   tgaagagatggggaagaaca 266
             ||||||||||||||||||||
Sbjct: 89539 tgaagagatggggaagaaca 89558



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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 219     ggccgccattggcgccgtcc 238
               ||||||||||||||||||||
Sbjct: 1161428 ggccgccattggcgccgtcc 1161409



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>ref|XM_695218.1| PREDICTED: Danio rerio similar to Wu:fl05f04 protein (LOC571612),
            mRNA
          Length = 1836

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 86   accctcacacccgtcctctt 105
            ||||||||||||||||||||
Sbjct: 1309 accctcacacccgtcctctt 1328



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>emb|BX323602.7| Zebrafish DNA sequence from clone RP71-61H23, complete sequence
          Length = 156514

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 86     accctcacacccgtcctctt 105
              ||||||||||||||||||||
Sbjct: 111429 accctcacacccgtcctctt 111410



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 211      ccgcccgtggccgccattggcgcc 234
                ||||||||||||||||||| ||||
Sbjct: 17040387 ccgcccgtggccgccattgtcgcc 17040364



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>dbj|AP004723.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OJ1126_G08
          Length = 157455

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 211   ccgcccgtggccgccattggcgcc 234
             ||||||||||||||||||| ||||
Sbjct: 37336 ccgcccgtggccgccattgtcgcc 37313



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>gb|AC104898.9| Mus musculus chromosome 8, clone RP23-300I4, complete sequence
          Length = 181370

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 247   tgaagagatggggaagaaca 266
             ||||||||||||||||||||
Sbjct: 86298 tgaagagatggggaagaaca 86317



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>emb|AL805938.4| Mouse DNA sequence from clone RP23-248L9 on chromosome X, complete
             sequence
          Length = 81921

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 248   gaagagatggggaagaacac 267
             ||||||||||||||||||||
Sbjct: 22065 gaagagatggggaagaacac 22046


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,053,872
Number of Sequences: 3902068
Number of extensions: 1053872
Number of successful extensions: 20819
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 20763
Number of HSP's gapped (non-prelim): 56
length of query: 288
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 266
effective length of database: 17,147,199,772
effective search space: 4561155139352
effective search space used: 4561155139352
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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