ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl18g07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|CR382327.27| Zebrafish DNA sequence from clone CH211-235M3 i... 50 0.005
2gb|AC124399.4| Mus musculus BAC clone RP24-351I17 from chromosom... 46 0.081
3gb|AY017859.1| Oryza sativa microsatellite MRG0184 containing (A... 42 1.3
4ref|XM_613593.2| PREDICTED: Bos taurus similar to pleckstrin hom... 42 1.3
5ref|XM_645724.1| Entamoeba histolytica HM-1:IMSS hypothetical pr... 42 1.3
6emb|BX465220.18| Zebrafish DNA sequence from clone CH211-226O13 ... 42 1.3
7emb|CR388403.8| Zebrafish DNA sequence from clone CH211-153C18 i... 42 1.3
8emb|BX296567.23| Zebrafish DNA sequence from clone DKEY-261P22 i... 42 1.3
9emb|BX649439.8| Zebrafish DNA sequence from clone DKEY-21A8 in l... 42 1.3
10emb|BX640584.10| Zebrafish DNA sequence from clone DKEY-78O7 in ... 42 1.3
11emb|BX927103.12| Zebrafish DNA sequence from clone DKEY-262M23 i... 42 1.3
12emb|CT573179.5| Zebrafish DNA sequence from clone CH73-76G6 in l... 42 1.3
13gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome 40 5.0
14gb|AF470059.1| Sorghum bicolor P-type R2R3 Myb protein (Myb9) ge... 40 5.0
15gb|AC123802.2| Mus musculus BAC clone RP24-398M15 from 3, comple... 40 5.0
16emb|AL008734.10|HS324M8 Human DNA sequence from clone RP3-324M8 ... 40 5.0
17emb|AL939111.1|SCO939111 Streptomyces coelicolor A3(2) complete ... 40 5.0
18dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, compl... 40 5.0
19emb|BX511144.13| Zebrafish DNA sequence from clone CH211-39L20 i... 40 5.0
20emb|BX470141.4| Zebrafish DNA sequence from clone DKEY-110M20 in... 40 5.0
21emb|AL021492.1|CEY45F10D Caenorhabditis elegans YAC Y45F10D, com... 40 5.0
22dbj|AB231865.1| Spisula solidissima gene for zinc finger protein... 40 5.0

>emb|CR382327.27| Zebrafish DNA sequence from clone CH211-235M3 in linkage group 15,
             complete sequence
          Length = 151282

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                          
Query: 128   aaaacacaaaaacaactaaaacgaacaca 156
             |||||||||||||||||||||| ||||||
Sbjct: 93382 aaaacacaaaaacaactaaaacaaacaca 93410



 Score = 50.1 bits (25), Expect = 0.005
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                          
Query: 128   aaaacacaaaaacaactaaaacgaacaca 156
             |||||||||||||||||||||| ||||||
Sbjct: 91676 aaaacacaaaaacaactaaaacaaacaca 91704



 Score = 50.1 bits (25), Expect = 0.005
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                          
Query: 128   aaaacacaaaaacaactaaaacgaacaca 156
             |||||||||||||||||||||| ||||||
Sbjct: 89972 aaaacacaaaaacaactaaaacaaacaca 90000



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>gb|AC124399.4| Mus musculus BAC clone RP24-351I17 from chromosome 10, complete sequence
          Length = 179668

 Score = 46.1 bits (23), Expect = 0.081
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                             
Query: 1      cttcgtcttcctcccctcgctcctcccccca 31
              |||| ||||||||||||| ||||||||||||
Sbjct: 108548 cttcttcttcctcccctccctcctcccccca 108518



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>gb|AY017859.1| Oryza sativa microsatellite MRG0184 containing (AG)X14, closest to
           marker C875, genomic sequence
          Length = 228

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 160 cgcgcgggcgggccggagggg 180
           |||||||||||||||||||||
Sbjct: 19  cgcgcgggcgggccggagggg 39



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>ref|XM_613593.2| PREDICTED: Bos taurus similar to pleckstrin homology-like domain,
            family B, member 1, transcript variant 1 (LOC533996),
            mRNA
          Length = 5201

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 10   cctcccctcgctcctcccccc 30
            |||||||||||||||||||||
Sbjct: 2617 cctcccctcgctcctcccccc 2637



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>ref|XM_645724.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (198.t00020)
           partial mRNA
          Length = 642

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 128 aaaacacaaaaacaactaaaa 148
           |||||||||||||||||||||
Sbjct: 388 aaaacacaaaaacaactaaaa 408



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>emb|BX465220.18| Zebrafish DNA sequence from clone CH211-226O13 in linkage group 21,
              complete sequence
          Length = 209782

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 136    aaaacaactaaaacgaacaca 156
              |||||||||||||||||||||
Sbjct: 166256 aaaacaactaaaacgaacaca 166236



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>emb|CR388403.8| Zebrafish DNA sequence from clone CH211-153C18 in linkage group 2,
              complete sequence
          Length = 159100

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 136    aaaacaactaaaacgaacaca 156
              |||||||||||||||||||||
Sbjct: 155998 aaaacaactaaaacgaacaca 156018



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>emb|BX296567.23| Zebrafish DNA sequence from clone DKEY-261P22 in linkage group 15,
             complete sequence
          Length = 224041

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 136   aaaacaactaaaacgaacaca 156
             |||||||||||||||||||||
Sbjct: 80738 aaaacaactaaaacgaacaca 80718



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>emb|BX649439.8| Zebrafish DNA sequence from clone DKEY-21A8 in linkage group 2, complete
              sequence
          Length = 146298

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 136    aaaacaactaaaacgaacaca 156
              |||||||||||||||||||||
Sbjct: 137038 aaaacaactaaaacgaacaca 137018



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>emb|BX640584.10| Zebrafish DNA sequence from clone DKEY-78O7 in linkage group 14, complete
              sequence
          Length = 265520

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 136    aaaacaactaaaacgaacaca 156
              |||||||||||||||||||||
Sbjct: 132296 aaaacaactaaaacgaacaca 132276



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>emb|BX927103.12| Zebrafish DNA sequence from clone DKEY-262M23 in linkage group 18,
             complete sequence
          Length = 185008

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 136   aaaacaactaaaacgaacaca 156
             |||||||||||||||||||||
Sbjct: 97066 aaaacaactaaaacgaacaca 97086



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>emb|CT573179.5| Zebrafish DNA sequence from clone CH73-76G6 in linkage group 18,
             complete sequence
          Length = 55919

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 127   gaaaacacaaaaacaactaaa 147
             |||||||||||||||||||||
Sbjct: 16341 gaaaacacaaaaacaactaaa 16361



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>gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome
          Length = 2364842

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 160    cgcgcgggcgggccggaggg 179
              ||||||||||||||||||||
Sbjct: 606173 cgcgcgggcgggccggaggg 606192



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>gb|AF470059.1| Sorghum bicolor P-type R2R3 Myb protein (Myb9) gene, partial cds
          Length = 2159

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 1    cttcgtcttcctcccctcgctcct 24
            |||||||||||||| |||||||||
Sbjct: 1861 cttcgtcttcctcctctcgctcct 1884



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>gb|AC123802.2| Mus musculus BAC clone RP24-398M15 from 3, complete sequence
          Length = 121242

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 129   aaacacaaaaacaactaaaacgaacaca 156
             ||||||||||||||| ||||| ||||||
Sbjct: 88307 aaacacaaaaacaacaaaaacaaacaca 88334



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>emb|AL008734.10|HS324M8 Human DNA sequence from clone RP3-324M8 on chromosome 1p36.2-36.3
             Contains the 5' end of the gene for a novel SPRY domain
             containing protein and a CpG island, complete sequence
          Length = 85116

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 12    tcccctcgctcctcccccca 31
             ||||||||||||||||||||
Sbjct: 28507 tcccctcgctcctcccccca 28488



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>emb|AL939111.1|SCO939111 Streptomyces coelicolor A3(2) complete genome; segment 8/29
          Length = 321250

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 156   aggccgcgcgggcgggccgg 175
             ||||||||||||||||||||
Sbjct: 27652 aggccgcgcgggcgggccgg 27671



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>dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, complete genome
          Length = 4171146

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 358     gtggcggcgggctgatccgg 377
               ||||||||||||||||||||
Sbjct: 3667622 gtggcggcgggctgatccgg 3667641



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>emb|BX511144.13| Zebrafish DNA sequence from clone CH211-39L20 in linkage group 12,
             complete sequence
          Length = 185993

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 128   aaaacacaaaaacaactaaa 147
             ||||||||||||||||||||
Sbjct: 32994 aaaacacaaaaacaactaaa 32975



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>emb|BX470141.4| Zebrafish DNA sequence from clone DKEY-110M20 in linkage group 12,
             complete sequence
          Length = 84274

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 128   aaaacacaaaaacaactaaa 147
             ||||||||||||||||||||
Sbjct: 20961 aaaacacaaaaacaactaaa 20980



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>emb|AL021492.1|CEY45F10D Caenorhabditis elegans YAC Y45F10D, complete sequence
          Length = 59573

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 124   ccggaaaacacaaaaacaac 143
             ||||||||||||||||||||
Sbjct: 45609 ccggaaaacacaaaaacaac 45590



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>dbj|AB231865.1| Spisula solidissima gene for zinc finger protein Sso-Zic, complete cds
          Length = 209833

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 96    aaaagcggcgaaacacccca 115
             ||||||||||||||||||||
Sbjct: 19486 aaaagcggcgaaacacccca 19505


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,850,840
Number of Sequences: 3902068
Number of extensions: 1850840
Number of successful extensions: 45722
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 45649
Number of HSP's gapped (non-prelim): 73
length of query: 377
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 355
effective length of database: 17,147,199,772
effective search space: 6087255919060
effective search space used: 6087255919060
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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