Clone Name | bastl18g07 |
---|---|
Clone Library Name | barley_pub |
>emb|CR382327.27| Zebrafish DNA sequence from clone CH211-235M3 in linkage group 15, complete sequence Length = 151282 Score = 50.1 bits (25), Expect = 0.005 Identities = 28/29 (96%) Strand = Plus / Plus Query: 128 aaaacacaaaaacaactaaaacgaacaca 156 |||||||||||||||||||||| |||||| Sbjct: 93382 aaaacacaaaaacaactaaaacaaacaca 93410 Score = 50.1 bits (25), Expect = 0.005 Identities = 28/29 (96%) Strand = Plus / Plus Query: 128 aaaacacaaaaacaactaaaacgaacaca 156 |||||||||||||||||||||| |||||| Sbjct: 91676 aaaacacaaaaacaactaaaacaaacaca 91704 Score = 50.1 bits (25), Expect = 0.005 Identities = 28/29 (96%) Strand = Plus / Plus Query: 128 aaaacacaaaaacaactaaaacgaacaca 156 |||||||||||||||||||||| |||||| Sbjct: 89972 aaaacacaaaaacaactaaaacaaacaca 90000
>gb|AC124399.4| Mus musculus BAC clone RP24-351I17 from chromosome 10, complete sequence Length = 179668 Score = 46.1 bits (23), Expect = 0.081 Identities = 29/31 (93%) Strand = Plus / Minus Query: 1 cttcgtcttcctcccctcgctcctcccccca 31 |||| ||||||||||||| |||||||||||| Sbjct: 108548 cttcttcttcctcccctccctcctcccccca 108518
>gb|AY017859.1| Oryza sativa microsatellite MRG0184 containing (AG)X14, closest to marker C875, genomic sequence Length = 228 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 160 cgcgcgggcgggccggagggg 180 ||||||||||||||||||||| Sbjct: 19 cgcgcgggcgggccggagggg 39
>ref|XM_613593.2| PREDICTED: Bos taurus similar to pleckstrin homology-like domain, family B, member 1, transcript variant 1 (LOC533996), mRNA Length = 5201 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 10 cctcccctcgctcctcccccc 30 ||||||||||||||||||||| Sbjct: 2617 cctcccctcgctcctcccccc 2637
>ref|XM_645724.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (198.t00020) partial mRNA Length = 642 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 128 aaaacacaaaaacaactaaaa 148 ||||||||||||||||||||| Sbjct: 388 aaaacacaaaaacaactaaaa 408
>emb|BX465220.18| Zebrafish DNA sequence from clone CH211-226O13 in linkage group 21, complete sequence Length = 209782 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 136 aaaacaactaaaacgaacaca 156 ||||||||||||||||||||| Sbjct: 166256 aaaacaactaaaacgaacaca 166236
>emb|CR388403.8| Zebrafish DNA sequence from clone CH211-153C18 in linkage group 2, complete sequence Length = 159100 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 136 aaaacaactaaaacgaacaca 156 ||||||||||||||||||||| Sbjct: 155998 aaaacaactaaaacgaacaca 156018
>emb|BX296567.23| Zebrafish DNA sequence from clone DKEY-261P22 in linkage group 15, complete sequence Length = 224041 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 136 aaaacaactaaaacgaacaca 156 ||||||||||||||||||||| Sbjct: 80738 aaaacaactaaaacgaacaca 80718
>emb|BX649439.8| Zebrafish DNA sequence from clone DKEY-21A8 in linkage group 2, complete sequence Length = 146298 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 136 aaaacaactaaaacgaacaca 156 ||||||||||||||||||||| Sbjct: 137038 aaaacaactaaaacgaacaca 137018
>emb|BX640584.10| Zebrafish DNA sequence from clone DKEY-78O7 in linkage group 14, complete sequence Length = 265520 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 136 aaaacaactaaaacgaacaca 156 ||||||||||||||||||||| Sbjct: 132296 aaaacaactaaaacgaacaca 132276
>emb|BX927103.12| Zebrafish DNA sequence from clone DKEY-262M23 in linkage group 18, complete sequence Length = 185008 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 136 aaaacaactaaaacgaacaca 156 ||||||||||||||||||||| Sbjct: 97066 aaaacaactaaaacgaacaca 97086
>emb|CT573179.5| Zebrafish DNA sequence from clone CH73-76G6 in linkage group 18, complete sequence Length = 55919 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 127 gaaaacacaaaaacaactaaa 147 ||||||||||||||||||||| Sbjct: 16341 gaaaacacaaaaacaactaaa 16361
>gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome Length = 2364842 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 cgcgcgggcgggccggaggg 179 |||||||||||||||||||| Sbjct: 606173 cgcgcgggcgggccggaggg 606192
>gb|AF470059.1| Sorghum bicolor P-type R2R3 Myb protein (Myb9) gene, partial cds Length = 2159 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 1 cttcgtcttcctcccctcgctcct 24 |||||||||||||| ||||||||| Sbjct: 1861 cttcgtcttcctcctctcgctcct 1884
>gb|AC123802.2| Mus musculus BAC clone RP24-398M15 from 3, complete sequence Length = 121242 Score = 40.1 bits (20), Expect = 5.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 129 aaacacaaaaacaactaaaacgaacaca 156 ||||||||||||||| ||||| |||||| Sbjct: 88307 aaacacaaaaacaacaaaaacaaacaca 88334
>emb|AL008734.10|HS324M8 Human DNA sequence from clone RP3-324M8 on chromosome 1p36.2-36.3 Contains the 5' end of the gene for a novel SPRY domain containing protein and a CpG island, complete sequence Length = 85116 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 tcccctcgctcctcccccca 31 |||||||||||||||||||| Sbjct: 28507 tcccctcgctcctcccccca 28488
>emb|AL939111.1|SCO939111 Streptomyces coelicolor A3(2) complete genome; segment 8/29 Length = 321250 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 aggccgcgcgggcgggccgg 175 |||||||||||||||||||| Sbjct: 27652 aggccgcgcgggcgggccgg 27671
>dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, complete genome Length = 4171146 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 358 gtggcggcgggctgatccgg 377 |||||||||||||||||||| Sbjct: 3667622 gtggcggcgggctgatccgg 3667641
>emb|BX511144.13| Zebrafish DNA sequence from clone CH211-39L20 in linkage group 12, complete sequence Length = 185993 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 128 aaaacacaaaaacaactaaa 147 |||||||||||||||||||| Sbjct: 32994 aaaacacaaaaacaactaaa 32975
>emb|BX470141.4| Zebrafish DNA sequence from clone DKEY-110M20 in linkage group 12, complete sequence Length = 84274 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 128 aaaacacaaaaacaactaaa 147 |||||||||||||||||||| Sbjct: 20961 aaaacacaaaaacaactaaa 20980
>emb|AL021492.1|CEY45F10D Caenorhabditis elegans YAC Y45F10D, complete sequence Length = 59573 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 ccggaaaacacaaaaacaac 143 |||||||||||||||||||| Sbjct: 45609 ccggaaaacacaaaaacaac 45590
>dbj|AB231865.1| Spisula solidissima gene for zinc finger protein Sso-Zic, complete cds Length = 209833 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 aaaagcggcgaaacacccca 115 |||||||||||||||||||| Sbjct: 19486 aaaagcggcgaaacacccca 19505 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,850,840 Number of Sequences: 3902068 Number of extensions: 1850840 Number of successful extensions: 45722 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 22 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 45649 Number of HSP's gapped (non-prelim): 73 length of query: 377 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 355 effective length of database: 17,147,199,772 effective search space: 6087255919060 effective search space used: 6087255919060 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)