>DNLI_THEVO (Q979A1) DNA ligase (EC 6.5.1.1) (Polydeoxyribonucleotide synthase|
           [ATP])
          Length = 588

 Score = 32.0 bits (71), Expect = 0.37
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -1

Query: 178 ERGCDTRTPDSRADAANWSTGGRVWSWGGLARVWTRWRWDT 56
           E GC+     S AD + +  G R W W  L R +    WDT
Sbjct: 396 EDGCEGLVAKSMADDSYYKAGARGWLWIKLKRDYQAQLWDT 436

>DNLI_THEAC (Q9HJ26) DNA ligase (EC 6.5.1.1) (Polydeoxyribonucleotide synthase|
           [ATP])
          Length = 588

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = -1

Query: 178 ERGCDTRTPDSRADAANWSTGGRVWSWGGLARVWTRWRWDT 56
           E GC+     S +  + +  G R W W  L R +    WDT
Sbjct: 396 EDGCEGLVAKSTSPDSFYKAGARGWLWIKLKRDYQAQLWDT 436

>SNX4_CRYNE (Q5KJJ8) Sorting nexin-4 (Autophagy-related protein 24)|
          Length = 493

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
 Frame = -3

Query: 194 TVAESGARVRHADARFASRRSELEHWR*GLE-----LGRAS*GLDAMAMGY 57
           T   + +RVR  DARF     ELE +  GL      +GR    +D +A  Y
Sbjct: 235 TFINAFSRVRKPDARFVEMTEELERFEEGLTGVERVVGRGKSRVDDLAADY 285


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,035,924
Number of Sequences: 219361
Number of extensions: 363229
Number of successful extensions: 1216
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1215
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 1386249648
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)