>MUTL_THEAQ (P96082) DNA mismatch repair protein mutL|
          Length = 533

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +2

Query: 68  PPFLQPTPDFPSIIYLQSQSGEG 136
           PPFL P P  P  I+ +S  GEG
Sbjct: 423 PPFLHPYPLLPPEIFRESLKGEG 445

>CM35H_HUMAN (Q9UGN4) CMRF35-H antigen precursor (CMRF35-H9) (CMRF-35-H9)|
           (CD300a antigen) (Inhibitory receptor protein 60)
           (IRp60) (IRC1/IRC2) (NK inhibitory receptor)
          Length = 299

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 5/42 (11%)
 Frame = -3

Query: 157 VSVRDVAA-----LTALGLEVDDGGEVWCGLQEGWSSCFAAP 47
           VS+RD  A     +T   L  +D G  WCG+   W   F  P
Sbjct: 75  VSIRDSPANLSFTVTLENLTEEDAGTYWCGVDTPWLQDFHDP 116

>T2FA_YEAST (P41895) Transcription initiation factor IIF alpha subunit (EC|
           2.7.11.1) (TFIIF-alpha) (TFIIF large subunit)
           (Transcription factor G 105 kDa subunit) (P105)
          Length = 735

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -1

Query: 294 SSKANQTKQLPAKEEEHLSSAVAQSWRQPSP 202
           S+ A+ T   P K+EE L+S VA+    P+P
Sbjct: 646 SNNASNTVPSPIKQEEGLNSTVAEREETPAP 676

>MARCS_MOUSE (P26645) Myristoylated alanine-rich C-kinase substrate (MARCKS)|
          Length = 308

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -1

Query: 324 PLPPKNAGRRSSKANQTKQLPAKEEEHLSSAVAQSWRQPSP 202
           P P   AG  SS A   ++ PA  +E  +SA   +  +P P
Sbjct: 255 PAPGATAGDASSAAGPEQEAPAATDEAAASAAPAASPEPQP 295

>CM35A_HUMAN (Q08708) CMRF35-A antigen precursor (CMRF-35) (CD300c antigen)|
          Length = 224

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 5/42 (11%)
 Frame = -3

Query: 157 VSVRDVAA-----LTALGLEVDDGGEVWCGLQEGWSSCFAAP 47
           VS+RD  A     +T   L  +D G  WCG+   W   F  P
Sbjct: 82  VSIRDSPANLSFTVTLENLTEEDAGTYWCGVDTPWLRDFHDP 123

>DPOLZ_MOUSE (Q61493) DNA polymerase zeta catalytic subunit (EC 2.7.7.7)|
            (Seizure-related protein 4)
          Length = 3122

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -1

Query: 339  RHRLLPLPPKNAGRRSSKANQTKQLPAKEEEHLSSAVAQS 220
            ++ + PL PK + RR SK    K+ P K+    S  + ++
Sbjct: 1033 KYPIYPLTPKKSHRRKSKHKSAKKKPGKQHRTNSENIKRT 1072

>VAR3_ARATH (Q8S9K3) Zinc finger protein VAR3, chloroplast precursor|
           (VARIEGATED 3 protein)
          Length = 758

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = -1

Query: 327 LPLPPKNAGRRSSKANQTKQLPAKEEEHLSSAVAQSWRQPS 205
           +P PP    +          LPA   E++S  V Q  R+PS
Sbjct: 610 VPFPPDYFAKEKQPKESIDTLPAPATENVSQVVQQEPREPS 650

>GRPE_ONYPE (Q6YPM0) Protein grpE (HSP-70 cofactor)|
          Length = 247

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -1

Query: 312 KNAGRRSSKANQTKQLPAKEEEH 244
           KN   +S+++NQTKQ   K+++H
Sbjct: 50  KNQSNQSNQSNQTKQTNTKQQKH 72

>COBQ_SYNEL (Q8DI74) Cobyric acid synthase|
          Length = 493

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 124 LGLEVDDGGEVWCGLQEGWSSCFAAP 47
           LG E+  G   + G ++GW   FAAP
Sbjct: 391 LGYEIHQGQSEYTGDRQGWHPLFAAP 416


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,236,356
Number of Sequences: 219361
Number of extensions: 775230
Number of successful extensions: 2228
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2226
length of database: 80,573,946
effective HSP length: 88
effective length of database: 61,270,178
effective search space used: 1470484272
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)