ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bastl18g02 |
|---|---|
| Clone Library Name | barley_pub |
>SND1_MOUSE (Q78PY7) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) Length = 910 Score = 42.0 bits (97), Expect = 4e-04 Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 6/67 (8%) Frame = +2 Query: 116 AIMASNTGASGW------LRGKVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLAR 277 A A ++G+SG RG VK V SG +++ G + PPE+ I LS + A LAR Sbjct: 2 ASSAQSSGSSGGPAVPTVQRGIVKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLAR 61 Query: 278 RGGVDEP 298 R +P Sbjct: 62 RAAATQP 68
>SND1_BOVIN (Q863B3) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) Length = 910 Score = 42.0 bits (97), Expect = 4e-04 Identities = 21/48 (43%), Positives = 28/48 (58%) Frame = +2 Query: 155 RGKVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLARRGGVDEP 298 RG VK V SG +++ G + PPE+ I LS + A LARR V +P Sbjct: 21 RGIVKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLARRAAVAQP 68
>SND1_RAT (Q66X93) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) (SND p102) (p105 coactivator) Length = 909 Score = 41.6 bits (96), Expect = 5e-04 Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 6/64 (9%) Frame = +2 Query: 125 ASNTGASGW------LRGKVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLARRGG 286 A ++G+SG RG VK V SG +++ G + PPE+ I LS + A LARR Sbjct: 4 AQSSGSSGGPAVPTVQRGIVKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLARRAA 63 Query: 287 VDEP 298 +P Sbjct: 64 ATQP 67
>SND1_HUMAN (Q7KZF4) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) (EBNA2 coactivator p100) Length = 910 Score = 40.4 bits (93), Expect = 0.001 Identities = 19/48 (39%), Positives = 27/48 (56%) Frame = +2 Query: 155 RGKVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLARRGGVDEP 298 RG +K V SG +++ G + PPE+ I LS + A LARR +P Sbjct: 21 RGIIKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLARRAAATQP 68
>SND1_BRARE (Q7ZT42) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) (4SNc-Tudor domain protein) Length = 897 Score = 40.0 bits (92), Expect = 0.002 Identities = 22/60 (36%), Positives = 31/60 (51%) Frame = +2 Query: 119 IMASNTGASGWLRGKVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLARRGGVDEP 298 + +S A RG VK V SG +++ G + PPE+ I LS + A LARR +P Sbjct: 9 VQSSQASAPQLQRGIVKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGALARRAIQGQP 68
>HISX_BRAJA (P59397) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)| Length = 431 Score = 29.6 bits (65), Expect = 2.0 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 4/65 (6%) Frame = +2 Query: 92 LAAGQSQGAIMASNTGASGWLRGKVKAV----TSGDCLLIMGSTKAEIPPEKSITLSYLM 259 + AG S+ ++A +TG + W+ + A TS +LI S + EK++ Sbjct: 232 MIAGPSEVLVIADDTGNADWIAADLLAQAEHDTSAQSILITDSARLAADVEKAVEAQLKT 291 Query: 260 APRLA 274 PR A Sbjct: 292 LPRTA 296
>HCN4_RABIT (Q9TV66) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 4 (Hyperpolarization-activated cation channel 4) (HAC-4) Length = 1175 Score = 28.9 bits (63), Expect = 3.5 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%) Frame = +2 Query: 95 AAG--QSQGAIMASNTGASGWLRGKVKAVTSGDCLLIMGS 208 AAG +S+GA + G RG K+ T+GDC GS Sbjct: 66 AAGGAESRGAALGGAADGEGPARGAAKSSTNGDCRRFRGS 105
>KAPR_USTMA (P49605) cAMP-dependent protein kinase regulatory subunit (PKA| regulatory subunit) Length = 522 Score = 27.7 bits (60), Expect = 7.7 Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 4/74 (5%) Frame = -3 Query: 297 GSSTPPRRASLGAIRYDRVMDFSGG----ISALVLPMMRRQSPEVTAFTLPLSHPEAPVF 130 G ++P +RASL D +GG +++L +PM QSP+ T + P AP Sbjct: 80 GLASPTQRASL--FHSDPFAPGAGGGALPVASLAVPMDASQSPDSTPAPATPAAPAAPA- 136 Query: 129 DAMIAPWDWPAASG 88 A AP+ SG Sbjct: 137 -APAAPFSSLGGSG 149
>COBQ_MYCTU (P0A532) Cobyric acid synthase| Length = 494 Score = 27.7 bits (60), Expect = 7.7 Identities = 16/50 (32%), Positives = 21/50 (42%) Frame = +1 Query: 133 HRSFRMAKGQGEGCDFWGLPSHHGEHQGRDPAREVHHSVIPYGPKAGSSW 282 H+ R+ +G+G G G HHG D A E GP G+ W Sbjct: 375 HKVLRLPRGEGLGVPASGYEIHHGRITRGDTAEEFLGGARD-GPVFGTMW 423
>COBQ_MYCBO (P0A533) Cobyric acid synthase| Length = 494 Score = 27.7 bits (60), Expect = 7.7 Identities = 16/50 (32%), Positives = 21/50 (42%) Frame = +1 Query: 133 HRSFRMAKGQGEGCDFWGLPSHHGEHQGRDPAREVHHSVIPYGPKAGSSW 282 H+ R+ +G+G G G HHG D A E GP G+ W Sbjct: 375 HKVLRLPRGEGLGVPASGYEIHHGRITRGDTAEEFLGGARD-GPVFGTMW 423
>MYCB2_MOUSE (Q7TPH6) Probable ubiquitin ligase protein MYCBP2 (EC 6.3.2.-) (Myc| binding protein 2) (Protein associated with Myc) (Pam/highwire/rpm-1 protein) Length = 4711 Score = 27.7 bits (60), Expect = 7.7 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%) Frame = -3 Query: 93 SGLRLPIRDPGEGVWPAG*SLLS-RPDPDPN 4 +GL + ++DP +G+ P G L+ + DP PN Sbjct: 2393 AGLEVKVKDPPKGMIPPGTQLVKPKADPQPN 2423 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 43,280,471 Number of Sequences: 219361 Number of extensions: 792484 Number of successful extensions: 2210 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 2179 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2210 length of database: 80,573,946 effective HSP length: 75 effective length of database: 64,121,871 effective search space used: 1538924904 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
