ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl18g01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|M55604.1|WHTUBA1 T.aestivum ubiquitin activating enzyme E1 (U... 115 1e-22
2gb|M90663.1|WHTE1A Wheat ubiquitin activating enzyme (E1) mRNA, ... 90 7e-15
3dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 68 3e-08
4gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 68 3e-08
5emb|BX000501.4|CNS08CDR Oryza sativa chromosome 11, . BAC OSJNBa... 68 3e-08
6emb|BX000497.1|CNS08CDN Oryza sativa chromosome 11, . BAC OSJNBa... 68 3e-08
7gb|M90664.1|WHTE1B Wheat ubiquitin activating enzyme (E1) mRNA, ... 62 2e-06
8dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 60 6e-06
9dbj|AK111781.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 6e-06
10gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 60 6e-06
11emb|BX000494.2|CNS08CDK Oryza sativa chromosome 12, . BAC OSJNBa... 60 6e-06
12gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 56 1e-04
13gb|AC137072.2| Genomic sequence for Oryza sativa, Nipponbare str... 56 1e-04
14dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-04
15dbj|AK120544.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 1e-04
16ref|NM_185567.2| Oryza sativa (japonica cultivar-group), mRNA 48 0.024
17dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.024
18dbj|AK074007.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.024
19dbj|AP004333.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.024
20gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome 46 0.093
21gb|AY232997.1| Pseudomonas aeruginosa PcrG (pcrG), PcrV (pcrV), ... 44 0.37
22gb|AE004597.1| Pseudomonas aeruginosa PAO1, section 158 of 529 o... 44 0.37
23gb|AF035922.1|AF035922 Pseudomonas aeruginosa PepB and PepD gene... 44 0.37
24gb|AF010149.1|AF010149 Pseudomonas aeruginosa PcrG (pcrG), PcrV ... 44 0.37
25gb|DQ346667.1| Rhodococcus sp. DK17 vanillate monooxygenase oxyg... 42 1.5
26gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 42 1.5
27ref|NM_190755.1| Oryza sativa (japonica cultivar-group), predic... 40 5.7
28gb|AC158918.7| Mus musculus chromosome 15, clone RP23-106N12, co... 40 5.7
29emb|Z83106.1|CEF22B8 Caenorhabditis elegans Cosmid F22B8, comple... 40 5.7
30emb|CR706170.3|CNS0G7TY Tetraodon nigroviridis full-length cDNA 40 5.7
31gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome 40 5.7
32emb|X69959.1|ACNTRA A.caulinodans NtrA gene for RNA polymerase s... 40 5.7
33gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome 40 5.7
34gb|AC084388.1| Mus musculus clone RP23-132G6, complete sequence 40 5.7
35gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 40 5.7
36gb|AC107751.11| Mus musculus chromosome 15, clone RP23-244L21, c... 40 5.7
37dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
38dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
39dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 5.7
40dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 40 5.7
41dbj|AP004784.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
42dbj|AP003871.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7 
>gb|M55604.1|WHTUBA1 T.aestivum ubiquitin activating enzyme E1 (UBA1) gene, complete cds
          Length = 3586

 Score =  115 bits (58), Expect = 1e-22
 Identities = 134/160 (83%), Gaps = 12/160 (7%)
 Strand = Plus / Plus

                                                                       
Query: 187 cgctggatctggcgcggcagctcccgccggccgcctactactactgcctgcttttcgcgg 246
           ||||||||||| |||||||||||||| ||||||| |||||||   ||||||| ||||| |
Sbjct: 82  cgctggatctgacgcggcagctcccggcggccgcgtactact---gcctgctcttcgctg 138

                                                                       
Query: 247 cggcgg---------tcgggctcatcggcggcgtcgcgcactatatgctccctcggaagc 297
           || |||         |||||||| ||||||||||||||| ||||||||| || |||||||
Sbjct: 139 cgtcggcggctgtcctcgggctcctcggcggcgtcgcgcgctatatgcttccccggaagc 198

                                                   
Query: 298 gggagatcgtcgccagcgaggtcgagaaccagcagaagaa 337
           |||||||||||||| ||||||||||| ||  |||||||||
Sbjct: 199 gggagatcgtcgccggcgaggtcgaggacttgcagaagaa 238



 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 53/59 (89%)
 Strand = Plus / Plus

                                                                      
Query: 369 gccatggcagggaggcccacggagatcgacgaggacctccacagccgccagctcgccgt 427
           |||||||||||||||   |  ||||||||||||||||| ||||||||||||||||||||
Sbjct: 285 gccatggcagggagggggaacgagatcgacgaggacctgcacagccgccagctcgccgt 343
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>gb|M90663.1|WHTE1A Wheat ubiquitin activating enzyme (E1) mRNA, complete cds
          Length = 3695

 Score = 89.7 bits (45), Expect = 7e-15
 Identities = 76/85 (89%), Gaps = 1/85 (1%)
 Strand = Plus / Plus

                                                                       
Query: 253 tcgggctcatcggcggcgtcgcgcactatatgctccctcggaagcgggagatcgtcgcca 312
           |||||||| |||||| |||||||| ||||||||| || ||||||||||||||||||||| 
Sbjct: 250 tcgggctcctcggcg-cgtcgcgcgctatatgcttccccggaagcgggagatcgtcgccg 308

                                    
Query: 313 gcgaggtcgagaaccagcagaagaa 337
           ||||||||||| ||  |||||||||
Sbjct: 309 gcgaggtcgaggacttgcagaagaa 333



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                 
Query: 390 gagatcgacgaggacctccacagccgccagctcgccgt 427
           ||||||||||||||||| ||||||||||||||||||||
Sbjct: 401 gagatcgacgaggacctgcacagccgccagctcgccgt 438
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11,
              complete sequence
          Length = 28386948

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 37/38 (97%)
 Strand = Plus / Minus

                                                    
Query: 390    gagatcgacgaggacctccacagccgccagctcgccgt 427
              |||||||| |||||||||||||||||||||||||||||
Sbjct: 300172 gagatcgatgaggacctccacagccgccagctcgccgt 300135



 Score = 44.1 bits (22), Expect = 0.37
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                                
Query: 189    ctggatctggcgcggcagctcccgccggccgcct 222
              ||||||||| ||||||||||| ||||||| ||||
Sbjct: 300382 ctggatctgacgcggcagctctcgccggctgcct 300349
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 37/38 (97%)
 Strand = Plus / Minus

                                                    
Query: 390    gagatcgacgaggacctccacagccgccagctcgccgt 427
              |||||||| |||||||||||||||||||||||||||||
Sbjct: 300172 gagatcgatgaggacctccacagccgccagctcgccgt 300135



 Score = 44.1 bits (22), Expect = 0.37
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                                
Query: 189    ctggatctggcgcggcagctcccgccggccgcct 222
              ||||||||| ||||||||||| ||||||| ||||
Sbjct: 300382 ctggatctgacgcggcagctctcgccggctgcct 300349
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>emb|BX000501.4|CNS08CDR Oryza sativa chromosome 11, . BAC OSJNBa0032J07 of library OSJNBa
            from chromosome 11 of cultivar Nipponbare of ssp.
            japonica of Oryza sativa (rice), complete sequence
          Length = 160673

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                  
Query: 390  gagatcgacgaggacctccacagccgccagctcgccgt 427
            |||||||| |||||||||||||||||||||||||||||
Sbjct: 4821 gagatcgatgaggacctccacagccgccagctcgccgt 4858



 Score = 44.1 bits (22), Expect = 0.37
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                              
Query: 189  ctggatctggcgcggcagctcccgccggccgcct 222
            ||||||||| ||||||||||| ||||||| ||||
Sbjct: 4611 ctggatctgacgcggcagctctcgccggctgcct 4644
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>emb|BX000497.1|CNS08CDN Oryza sativa chromosome 11, . BAC OSJNBa0010K05 of library OSJNBa
            from chromosome 11 of cultivar Nipponbare of ssp.
            japonica of Oryza sativa (rice), complete sequence
          Length = 164143

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 37/38 (97%)
 Strand = Plus / Minus

                                                  
Query: 390  gagatcgacgaggacctccacagccgccagctcgccgt 427
            |||||||| |||||||||||||||||||||||||||||
Sbjct: 7490 gagatcgatgaggacctccacagccgccagctcgccgt 7453



 Score = 44.1 bits (22), Expect = 0.37
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                              
Query: 189  ctggatctggcgcggcagctcccgccggccgcct 222
            ||||||||| ||||||||||| ||||||| ||||
Sbjct: 7700 ctggatctgacgcggcagctctcgccggctgcct 7667
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>gb|M90664.1|WHTE1B Wheat ubiquitin activating enzyme (E1) mRNA, complete cds
          Length = 3588

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 37/39 (94%)
 Strand = Plus / Plus

                                                  
Query: 389 ggagatcgacgaggacctccacagccgccagctcgccgt 427
           ||||||||||||||||||||||||| | |||||||||||
Sbjct: 317 ggagatcgacgaggacctccacagcaggcagctcgccgt 355
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12,
              complete sequence
          Length = 27566993

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                    
Query: 390    gagatcgacgaggacctccacagccgccagctcgccgt 427
              |||||||| |||||||| ||||||||||||||||||||
Sbjct: 317137 gagatcgatgaggaccttcacagccgccagctcgccgt 317100



 Score = 44.1 bits (22), Expect = 0.37
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                                
Query: 189    ctggatctggcgcggcagctcccgccggccgcct 222
              ||||||||| ||||||||||| ||||||| ||||
Sbjct: 317350 ctggatctgacgcggcagctctcgccggctgcct 317317
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>dbj|AK111781.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023083B12, full
           insert sequence
          Length = 3724

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                 
Query: 390 gagatcgacgaggacctccacagccgccagctcgccgt 427
           |||||||| |||||||| ||||||||||||||||||||
Sbjct: 438 gagatcgatgaggaccttcacagccgccagctcgccgt 475



 Score = 44.1 bits (22), Expect = 0.37
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                             
Query: 189 ctggatctggcgcggcagctcccgccggccgcct 222
           ||||||||| ||||||||||| ||||||| ||||
Sbjct: 225 ctggatctgacgcggcagctctcgccggctgcct 258
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                    
Query: 390    gagatcgacgaggacctccacagccgccagctcgccgt 427
              |||||||| |||||||| ||||||||||||||||||||
Sbjct: 317137 gagatcgatgaggaccttcacagccgccagctcgccgt 317100



 Score = 44.1 bits (22), Expect = 0.37
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                                
Query: 189    ctggatctggcgcggcagctcccgccggccgcct 222
              ||||||||| ||||||||||| ||||||| ||||
Sbjct: 317350 ctggatctgacgcggcagctctcgccggctgcct 317317
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>emb|BX000494.2|CNS08CDK Oryza sativa chromosome 12, . BAC OSJNBa0052H10 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 152222

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                   
Query: 390   gagatcgacgaggacctccacagccgccagctcgccgt 427
             |||||||| |||||||| ||||||||||||||||||||
Sbjct: 50188 gagatcgatgaggaccttcacagccgccagctcgccgt 50151



 Score = 44.1 bits (22), Expect = 0.37
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                               
Query: 189   ctggatctggcgcggcagctcccgccggccgcct 222
             ||||||||| ||||||||||| ||||||| ||||
Sbjct: 50401 ctggatctgacgcggcagctctcgccggctgcct 50368
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                        
Query: 388      cggagatcgacgaggacctccacagccgccagctcgccgt 427
                ||||||||||||||||||| |||||| | |||||||||||
Sbjct: 10276949 cggagatcgacgaggacctgcacagcaggcagctcgccgt 10276910
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>gb|AC137072.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0045E22, from chromosome 3, complete sequence
          Length = 160920

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                      
Query: 388    cggagatcgacgaggacctccacagccgccagctcgccgt 427
              ||||||||||||||||||| |||||| | |||||||||||
Sbjct: 138362 cggagatcgacgaggacctgcacagcaggcagctcgccgt 138323
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                        
Query: 388      cggagatcgacgaggacctccacagccgccagctcgccgt 427
                ||||||||||||||||||| |||||| | |||||||||||
Sbjct: 10275050 cggagatcgacgaggacctgcacagcaggcagctcgccgt 10275011
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>dbj|AK120544.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013129J22, full
           insert sequence
          Length = 3682

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                   
Query: 388 cggagatcgacgaggacctccacagccgccagctcgccgt 427
           ||||||||||||||||||| |||||| | |||||||||||
Sbjct: 368 cggagatcgacgaggacctgcacagcaggcagctcgccgt 407
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>ref|NM_185567.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3522

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                   
Query: 388 cggagatcgacgaggacctccacagccgccagctcgccgt 427
           ||||||| ||||||||||| |||||| | |||||||||||
Sbjct: 329 cggagattgacgaggacctgcacagcaggcagctcgccgt 368
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                        
Query: 388      cggagatcgacgaggacctccacagccgccagctcgccgt 427
                ||||||| ||||||||||| |||||| | |||||||||||
Sbjct: 29425631 cggagattgacgaggacctgcacagcaggcagctcgccgt 29425670
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>dbj|AK074007.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033076H04, full
           insert sequence
          Length = 3522

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                   
Query: 388 cggagatcgacgaggacctccacagccgccagctcgccgt 427
           ||||||| ||||||||||| |||||| | |||||||||||
Sbjct: 329 cggagattgacgaggacctgcacagcaggcagctcgccgt 368
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>dbj|AP004333.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0034A04
          Length = 151263

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                     
Query: 388   cggagatcgacgaggacctccacagccgccagctcgccgt 427
             ||||||| ||||||||||| |||||| | |||||||||||
Sbjct: 88553 cggagattgacgaggacctgcacagcaggcagctcgccgt 88592
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>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
          Length = 3345170

 Score = 46.1 bits (23), Expect = 0.093
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 234    ctgcttttcgcggcggcggtcgg 256
              |||||||||||||||||||||||
Sbjct: 272756 ctgcttttcgcggcggcggtcgg 272778
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>gb|AY232997.1| Pseudomonas aeruginosa PcrG (pcrG), PcrV (pcrV), PcrH (pcrH), PopB
            (popB), and PopD (popD) genes, complete cds
          Length = 4231

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 313  gcgaggtcgagaaccagcagaagaaa 338
            |||| |||||||||||||||||||||
Sbjct: 2515 gcgaagtcgagaaccagcagaagaaa 2540
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>gb|AE004597.1| Pseudomonas aeruginosa PAO1, section 158 of 529 of the complete
            genome
          Length = 10052

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 313  gcgaggtcgagaaccagcagaagaaa 338
            |||| |||||||||||||||||||||
Sbjct: 6919 gcgaagtcgagaaccagcagaagaaa 6944
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>gb|AF035922.1|AF035922 Pseudomonas aeruginosa PepB and PepD genes, complete cds; and ExsC
           gene, partial cds
          Length = 2688

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 313 gcgaggtcgagaaccagcagaagaaa 338
           |||| |||||||||||||||||||||
Sbjct: 452 gcgaagtcgagaaccagcagaagaaa 477
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>gb|AF010149.1|AF010149 Pseudomonas aeruginosa PcrG (pcrG), PcrV (pcrV), PcrH (pcrH), PopB
            (popB) and PopD (popD) genes, complete cds
          Length = 4168

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 313  gcgaggtcgagaaccagcagaagaaa 338
            |||| |||||||||||||||||||||
Sbjct: 2361 gcgaagtcgagaaccagcagaagaaa 2386
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>gb|DQ346667.1| Rhodococcus sp. DK17 vanillate monooxygenase oxygenase subunit
           (vanA) and vanillate monooxygenase reductase subunit
           (vanB) genes, complete cds
          Length = 2290

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 385 ccacggagatcgacgaggacc 405
           |||||||||||||||||||||
Sbjct: 561 ccacggagatcgacgaggacc 581
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 299     ggagatcgtcgccagcgaggt 319
               |||||||||||||||||||||
Sbjct: 5095484 ggagatcgtcgccagcgaggt 5095464
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>ref|NM_190755.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 873

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 200 gcggcagctcccgccggccg 219
           ||||||||||||||||||||
Sbjct: 141 gcggcagctcccgccggccg 160
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>gb|AC158918.7| Mus musculus chromosome 15, clone RP23-106N12, complete sequence
          Length = 209747

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 21    attctctcatcttcctcata 40
             ||||||||||||||||||||
Sbjct: 89730 attctctcatcttcctcata 89711
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>emb|Z83106.1|CEF22B8 Caenorhabditis elegans Cosmid F22B8, complete sequence
          Length = 27102

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 90    acttccgcccaatctccctc 109
             ||||||||||||||||||||
Sbjct: 14784 acttccgcccaatctccctc 14765
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>emb|CR706170.3|CNS0G7TY Tetraodon nigroviridis full-length cDNA
          Length = 447

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 404 cctccacagccgccagctcg 423
           ||||||||||||||||||||
Sbjct: 23  cctccacagccgccagctcg 42
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>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 233     cctgcttttcgcggcggcggtcgg 256
               ||||||| ||||||||||||||||
Sbjct: 3214943 cctgcttctcgcggcggcggtcgg 3214920
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>emb|X69959.1|ACNTRA A.caulinodans NtrA gene for RNA polymerase sigma factor
          Length = 2674

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 232  gcctgcttttcgcggcggcg 251
            ||||||||||||||||||||
Sbjct: 2429 gcctgcttttcgcggcggcg 2410
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>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 373     tggcagggaggcccacggagatcg 396
               |||||||| |||||||||||||||
Sbjct: 3995320 tggcagggcggcccacggagatcg 3995297
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>gb|AC084388.1| Mus musculus clone RP23-132G6, complete sequence
          Length = 208754

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 21     attctctcatcttcctcata 40
              ||||||||||||||||||||
Sbjct: 185563 attctctcatcttcctcata 185544
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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 233     cctgcttttcgcggcggcggtcgg 256
               ||||||| ||||||||||||||||
Sbjct: 4599415 cctgcttctcgcggcggcggtcgg 4599392
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>gb|AC107751.11| Mus musculus chromosome 15, clone RP23-244L21, complete sequence
          Length = 188768

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 21    attctctcatcttcctcata 40
             ||||||||||||||||||||
Sbjct: 63649 attctctcatcttcctcata 63668
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 351      gacgccgacgacgccatggc 370
                ||||||||||||||||||||
Sbjct: 22103919 gacgccgacgacgccatggc 22103900
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 344      ccccgctgacgccgacgacg 363
                ||||||||||||||||||||
Sbjct: 13170622 ccccgctgacgccgacgacg 13170603
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 250     cggtcgggctcatcggcggc 269
               ||||||||||||||||||||
Sbjct: 2968702 cggtcgggctcatcggcggc 2968683
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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 234     ctgcttttcgcggcggcggt 253
               ||||||||||||||||||||
Sbjct: 2131662 ctgcttttcgcggcggcggt 2131643
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>dbj|AP004784.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0012F14
          Length = 168629

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 344   ccccgctgacgccgacgacg 363
             ||||||||||||||||||||
Sbjct: 87810 ccccgctgacgccgacgacg 87791
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>dbj|AP003871.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1117_F10
          Length = 169948

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 351   gacgccgacgacgccatggc 370
             ||||||||||||||||||||
Sbjct: 66882 gacgccgacgacgccatggc 66863


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,090,643
Number of Sequences: 3902068
Number of extensions: 3090643
Number of successful extensions: 65305
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 64185
Number of HSP's gapped (non-prelim): 1119
length of query: 427
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 405
effective length of database: 17,147,199,772
effective search space: 6944615907660
effective search space used: 6944615907660
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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