ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl18f12 |
|---|---|
| Clone Library Name | barley_pub |
>PSD2_MOUSE (Q8VDM4) 26S proteasome non-ATPase regulatory subunit 2 (26S| proteasome regulatory subunit RPN1) (26S proteasome regulatory subunit S2) (26S proteasome subunit p97) Length = 908 Score = 68.9 bits (167), Expect = 5e-12 Identities = 33/53 (62%), Positives = 42/53 (79%) Frame = +3 Query: 264 QLELYVVRAQDVDPGVQRLALESMRQEIRSATSSMTSVPKPLKFLRPHYGTLK 422 +LE+ V R + D + R ALE +R++IRS+T+SMTSVPKPLKFLRPHYG LK Sbjct: 55 ELEMLVERLGEKDTSLYRPALEELRRQIRSSTTSMTSVPKPLKFLRPHYGKLK 107
>PSD2_HUMAN (Q13200) 26S proteasome non-ATPase regulatory subunit 2 (26S| proteasome regulatory subunit RPN1) (26S proteasome regulatory subunit S2) (26S proteasome subunit p97) (Tumor necrosis factor type 1 receptor-associated protein 2) (55.11 protein) Length = 908 Score = 68.9 bits (167), Expect = 5e-12 Identities = 33/53 (62%), Positives = 42/53 (79%) Frame = +3 Query: 264 QLELYVVRAQDVDPGVQRLALESMRQEIRSATSSMTSVPKPLKFLRPHYGTLK 422 +LE+ V R + D + R ALE +R++IRS+T+SMTSVPKPLKFLRPHYG LK Sbjct: 55 ELEMLVERLGEKDTSLYRPALEELRRQIRSSTTSMTSVPKPLKFLRPHYGKLK 107
>RPN1_SCHPO (P87048) 26S proteasome regulatory subunit rpn1 (Proteasome| non-ATPase subunit mts4) (19S regulatory cap region of 26S protease subunit 2) Length = 891 Score = 58.5 bits (140), Expect = 7e-09 Identities = 29/51 (56%), Positives = 37/51 (72%) Frame = +3 Query: 267 LELYVVRAQDVDPGVQRLALESMRQEIRSATSSMTSVPKPLKFLRPHYGTL 419 LEL V QD P + +L +++ IR++TSSMT+VPKPLKFLRPHY TL Sbjct: 57 LELLVQAVQDATPELVGSSLTQLKEIIRTSTSSMTAVPKPLKFLRPHYFTL 107
>RPN1_NEUCR (Q7S8R8) 26S proteasome regulatory subunit rpn-1| Length = 883 Score = 56.2 bits (134), Expect = 3e-08 Identities = 25/43 (58%), Positives = 35/43 (81%) Frame = +3 Query: 291 QDVDPGVQRLALESMRQEIRSATSSMTSVPKPLKFLRPHYGTL 419 Q+ D + + ALE+M+ I+++TSSMT+VPKPLKFLRPHY T+ Sbjct: 48 QESDATLYKPALEAMKNSIKTSTSSMTAVPKPLKFLRPHYETM 90
>RPN1_YEAST (P38764) 26S proteasome regulatory subunit RPN1 (Proteasome| non-ATPase subunit 1) Length = 992 Score = 53.1 bits (126), Expect = 3e-07 Identities = 25/51 (49%), Positives = 37/51 (72%) Frame = +3 Query: 267 LELYVVRAQDVDPGVQRLALESMRQEIRSATSSMTSVPKPLKFLRPHYGTL 419 LEL V R ++ D + +L ++++ I+++TSSMT+VPKPLKFLRP Y L Sbjct: 48 LELLVERLKEDDSSLYEASLNALKESIKNSTSSMTAVPKPLKFLRPTYPDL 98
>RPN1_CANGA (Q6FPV6) 26S proteasome regulatory subunit RPN1| Length = 983 Score = 46.2 bits (108), Expect = 3e-05 Identities = 23/51 (45%), Positives = 33/51 (64%) Frame = +3 Query: 267 LELYVVRAQDVDPGVQRLALESMRQEIRSATSSMTSVPKPLKFLRPHYGTL 419 LE+ V + D + L +++ I+++TSSMT+VPKPLKFLRP Y L Sbjct: 49 LEMLVQTLLEDDSKLYETTLTQLKEFIKNSTSSMTAVPKPLKFLRPFYPDL 99
>ELL2_HUMAN (O00472) RNA polymerase II elongation factor ELL2| Length = 640 Score = 29.6 bits (65), Expect = 3.3 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%) Frame = +2 Query: 8 PTQQRRVASVPLAPRTLASP-PAPSPNRIRPASH 106 PT ++ A +PL P A P P P P+ P SH Sbjct: 354 PTSEKSAAGLPLPPAAAAIPTPPPLPSTYLPISH 387
>BAT2_RAT (Q6MG48) Large proline-rich protein BAT2 (HLA-B-associated transcript| 2) Length = 2161 Score = 29.6 bits (65), Expect = 3.3 Identities = 13/31 (41%), Positives = 19/31 (61%) Frame = +2 Query: 8 PTQQRRVASVPLAPRTLASPPAPSPNRIRPA 100 P ++ +A VPLAP +PP+P+P R A Sbjct: 1129 PPKEGVLAQVPLAPPQPGAPPSPAPARFSTA 1159
>YACF_SHIFL (Q83MF4) UPF0289 protein yacF| Length = 247 Score = 28.9 bits (63), Expect = 5.7 Identities = 12/33 (36%), Positives = 23/33 (69%) Frame = +3 Query: 303 PGVQRLALESMRQEIRSATSSMTSVPKPLKFLR 401 PGV + +E++ Q++++A S + S P+ +FLR Sbjct: 81 PGVDQSRIEALIQQLKAAVSVLISAPRIGQFLR 113
>YKY4_CAEEL (Q17963) Hypothetical WD-repeat protein C14B1.4| Length = 376 Score = 28.9 bits (63), Expect = 5.7 Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 2/34 (5%) Frame = +2 Query: 8 PTQQRRVASVPLAPRTLASPPAP--SPNRIRPAS 103 PTQQ +VP AP +S PAP SPN I P++ Sbjct: 15 PTQQIDQLTVPNAPDGGSSAPAPSTSPNSISPSN 48
>BAT2_MACMU (Q5TM26) Large proline-rich protein BAT2 (HLA-B-associated transcript| 2) Length = 2160 Score = 28.1 bits (61), Expect = 9.7 Identities = 11/27 (40%), Positives = 17/27 (62%) Frame = +2 Query: 8 PTQQRRVASVPLAPRTLASPPAPSPNR 88 P ++ + VPLAP +PP+P+P R Sbjct: 1129 PPKEGTLTQVPLAPPPPGAPPSPAPAR 1155
>YACF_SALTY (P67693) UPF0289 protein yacF| Length = 247 Score = 28.1 bits (61), Expect = 9.7 Identities = 11/27 (40%), Positives = 20/27 (74%) Frame = +3 Query: 303 PGVQRLALESMRQEIRSATSSMTSVPK 383 PGV + +E++RQ+++SA S + S P+ Sbjct: 81 PGVDQDRIEALRQQLKSAGSVLISAPR 107
>YACF_SALTI (P67694) UPF0289 protein yacF| Length = 247 Score = 28.1 bits (61), Expect = 9.7 Identities = 11/27 (40%), Positives = 20/27 (74%) Frame = +3 Query: 303 PGVQRLALESMRQEIRSATSSMTSVPK 383 PGV + +E++RQ+++SA S + S P+ Sbjct: 81 PGVDQDRIEALRQQLKSAGSVLISAPR 107
>YACF_SALPA (Q5PDD7) UPF0289 protein yacF| Length = 247 Score = 28.1 bits (61), Expect = 9.7 Identities = 11/27 (40%), Positives = 20/27 (74%) Frame = +3 Query: 303 PGVQRLALESMRQEIRSATSSMTSVPK 383 PGV + +E++RQ+++SA S + S P+ Sbjct: 81 PGVDQDRIEALRQQLKSAGSVLISAPR 107
>YACF_ECOLI (P36680) UPF0289 protein yacF| Length = 247 Score = 28.1 bits (61), Expect = 9.7 Identities = 12/33 (36%), Positives = 23/33 (69%) Frame = +3 Query: 303 PGVQRLALESMRQEIRSATSSMTSVPKPLKFLR 401 PGV + +E++ Q++++A S + S P+ +FLR Sbjct: 81 PGVDQSRIEALIQQLKAAGSVLISAPRIGQFLR 113
>YACF_ECOL6 (Q8FL56) UPF0289 protein yacF| Length = 247 Score = 28.1 bits (61), Expect = 9.7 Identities = 12/33 (36%), Positives = 23/33 (69%) Frame = +3 Query: 303 PGVQRLALESMRQEIRSATSSMTSVPKPLKFLR 401 PGV + +E++ Q++++A S + S P+ +FLR Sbjct: 81 PGVDQSRIEALIQQLKAAGSVLISAPRIGQFLR 113
>YACF_ECO57 (Q8X988) UPF0289 protein yacF| Length = 247 Score = 28.1 bits (61), Expect = 9.7 Identities = 12/33 (36%), Positives = 23/33 (69%) Frame = +3 Query: 303 PGVQRLALESMRQEIRSATSSMTSVPKPLKFLR 401 PGV + +E++ Q++++A S + S P+ +FLR Sbjct: 81 PGVDQSRIEALIQQLKAAGSVLISAPRIGQFLR 113
>PCY2_RAT (O88637) Ethanolamine-phosphate cytidylyltransferase (EC| 2.7.7.14) (Phosphorylethanolamine transferase) (CTP:phosphoethanolamine cytidylyltransferase) Length = 404 Score = 28.1 bits (61), Expect = 9.7 Identities = 13/30 (43%), Positives = 16/30 (53%) Frame = -1 Query: 90 IRFGDGAGGLARVRGASGTEATRRCCVGVF 1 IR G GAGG A ++G G R C G + Sbjct: 2 IRNGHGAGGAAGLKGPGGQRTVRVWCDGCY 31
>BAT2_MOUSE (Q7TSC1) Large proline-rich protein BAT2 (HLA-B-associated transcript| 2) Length = 2158 Score = 28.1 bits (61), Expect = 9.7 Identities = 12/31 (38%), Positives = 18/31 (58%) Frame = +2 Query: 8 PTQQRRVASVPLAPRTLASPPAPSPNRIRPA 100 P ++ + VPLAP +PP+P+P R A Sbjct: 1124 PPKEGVLGQVPLAPPQPGAPPSPAPARFSTA 1154 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 38,538,209 Number of Sequences: 219361 Number of extensions: 494532 Number of successful extensions: 2958 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 2711 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2947 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2511994855 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
