ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl18f07 |
|---|---|
| Clone Library Name | barley_pub |
>RRP44_HUMAN (Q9Y2L1) Exosome complex exonuclease RRP44 (EC 3.1.13.-) (Ribosomal| RNA-processing protein 44) (DIS3 protein homolog) Length = 958 Score = 85.1 bits (209), Expect = 4e-17 Identities = 46/115 (40%), Positives = 63/115 (54%), Gaps = 12/115 (10%) Frame = +3 Query: 87 MLQSKSFVKKTKQGRVVKVVREHYLRDDIPCGAFSCPSCXXXX------------XXXXX 230 ML+SK+F+KKT+ G V+K+VREHYLRDDI CGA C +C Sbjct: 1 MLKSKTFLKKTRAGGVMKIVREHYLRDDIGCGAPGCAACGGAHEGPALEPQPQDPASSVC 60 Query: 231 XXXXILVVDTNVVLHQIDLLENPAIXXXXXXXXXXXXXKNKNLSVYNRLKTLCTN 395 L+ DTNV+LHQID+LE+PAI +N++ VY R++ + N Sbjct: 61 PQPHYLLPDTNVLLHQIDVLEDPAIRNVIVLQTVLQEVRNRSAPVYKRIRDVTNN 115
>RRP44_YEAST (Q08162) Exosome complex exonuclease RRP44 (EC 3.1.13.-) (Ribosomal| RNA-processing protein 44) (Protein DIS3) Length = 1001 Score = 63.2 bits (152), Expect = 1e-10 Identities = 42/119 (35%), Positives = 54/119 (45%), Gaps = 19/119 (15%) Frame = +3 Query: 99 KSFVKKTKQGRVVKVVREHYLRDDIPCGAFSCPSC------------------XXXXXXX 224 K FV+ ++ G K+VREHYLR DIPC + SC C Sbjct: 22 KVFVR-SRNGGATKIVREHYLRSDIPCLSRSCTKCPQIVVPDAQNELPKFILSDSPLELS 80 Query: 225 XXXXXXILVVDTNVVLHQIDLLENP-AIXXXXXXXXXXXXXKNKNLSVYNRLKTLCTNT 398 +V+DTNVVL IDLLENP +NK+ VY RL+TLC ++ Sbjct: 81 APIGKHYVVLDTNVVLQAIDLLENPNCFFDVIVPQIVLDEVRNKSYPVYTRLRTLCRDS 139
>DIS3_SCHPO (P37202) Mitotic control protein dis3| Length = 970 Score = 55.8 bits (133), Expect = 2e-08 Identities = 36/117 (30%), Positives = 53/117 (45%), Gaps = 18/117 (15%) Frame = +3 Query: 93 QSKSFVKKTKQGRVVKVVREHYLRDDIPCGAFSCPSCXXXXXXXXXXXXX---------- 242 + + FV+ T+ G+V KVVRE YLR+DIPC + +CP C Sbjct: 18 RDRVFVRATR-GKVQKVVREQYLRNDIPCQSRACPLCRSKLPKDSRGNVLEPILSEKPMF 76 Query: 243 -------ILVVDTNVVLHQIDLLENP-AIXXXXXXXXXXXXXKNKNLSVYNRLKTLC 389 L+ D+N+ H ID LE+P +K++ +YNR+K LC Sbjct: 77 LEKFGHHYLIPDSNIFYHCIDALEHPNNFFDVIILQTVFSEISSKSIPLYNRMKRLC 133
>RRP44_CAEEL (Q17632) Probable exosome complex exonuclease RRP44 (EC 3.1.13.-)| (Ribosomal RNA-processing protein 44) (DIS3 protein homolog) Length = 1029 Score = 38.5 bits (88), Expect = 0.004 Identities = 22/102 (21%), Positives = 39/102 (38%), Gaps = 10/102 (9%) Frame = +3 Query: 114 KTKQGRVVKVVREHYLRDDIPCGAFSCPSCXXXXX----------XXXXXXXXILVVDTN 263 + + G+V K E YLR+D+ CG C +C L+VD+ Sbjct: 21 QNRSGKVYKRAEERYLRNDLSCGLAQCGTCKDFGTNPLLKIENPVRNAKVGRHALIVDST 80 Query: 264 VVLHQIDLLENPAIXXXXXXXXXXXXXKNKNLSVYNRLKTLC 389 ++ DL ++ + K K + Y ++ +LC Sbjct: 81 SLIRFYDLFDSSLLRDLIVTQTVWEGVKAKAVPAYKKMNSLC 122
>SODF_BACSU (O35023) Probable superoxide dismutase [Fe] (EC 1.15.1.1)| Length = 281 Score = 30.4 bits (67), Expect = 1.1 Identities = 10/27 (37%), Positives = 19/27 (70%) Frame = -2 Query: 380 LEPVVHGEVLVLHFVQHHRQHHDILNR 300 LEP + ++++LH +HH+ + D LN+ Sbjct: 92 LEPYISRDIMILHHTKHHQSYVDGLNK 118
>KCNA5_RABIT (P50638) Potassium voltage-gated channel subfamily A member 5| (Voltage-gated potassium channel subunit Kv1.5) Length = 598 Score = 30.4 bits (67), Expect = 1.1 Identities = 14/28 (50%), Positives = 15/28 (53%) Frame = -1 Query: 372 CCTRRGSCSSLRPAPPTAPRHPQSPDSP 289 C RRG+ RP PP P PQS SP Sbjct: 49 CSARRGAEPGERPLPPQPPELPQSRRSP 76
>SODM_PEA (P27084) Superoxide dismutase [Mn], mitochondrial precursor (EC| 1.15.1.1) Length = 233 Score = 30.0 bits (66), Expect = 1.4 Identities = 12/34 (35%), Positives = 21/34 (61%) Frame = -2 Query: 380 LEPVVHGEVLVLHFVQHHRQHHDILNRRILQQID 279 LEPV+ GE++ +H +HH+ + N+ + Q D Sbjct: 52 LEPVISGEIMQIHHQKHHQTYITNYNKALEQLHD 85
>SODM2_MAIZE (P41978) Superoxide dismutase [Mn] 3.2, mitochondrial precursor (EC| 1.15.1.1) Length = 232 Score = 30.0 bits (66), Expect = 1.4 Identities = 14/35 (40%), Positives = 24/35 (68%), Gaps = 1/35 (2%) Frame = -2 Query: 380 LEPVVHGEVLVLHFVQHHRQHHDILN-RRILQQID 279 LEPV+ GE++ LH +HH + ++N + L+Q+D Sbjct: 45 LEPVISGEIMRLHHQKHHATY--VVNYNKALEQLD 77
>SODM_CHLPN (Q9Z9C4) Superoxide dismutase [Mn] (EC 1.15.1.1)| Length = 207 Score = 30.0 bits (66), Expect = 1.4 Identities = 11/26 (42%), Positives = 19/26 (73%) Frame = -2 Query: 380 LEPVVHGEVLVLHFVQHHRQHHDILN 303 LEPV+ E+++LH +HH+ + + LN Sbjct: 18 LEPVISSEIMILHHQKHHQIYINNLN 43
>PTF1A_HUMAN (Q7RTS3) Pancreas transcription factor 1 subunit alpha| (Pancreas-specific transcription factor 1a) (bHLH transcription factor p48) (p48 DNA-binding subunit of transcription factor PTF1) (PTF1-p48) Length = 328 Score = 29.6 bits (65), Expect = 1.8 Identities = 13/26 (50%), Positives = 15/26 (57%) Frame = -1 Query: 369 CTRRGSCSSLRPAPPTAPRHPQSPDS 292 C R G+C L+PAPP AP P S Sbjct: 61 CYRDGACLLLQPAPPAAPLALAPPSS 86
>SODM_HEVBR (P35017) Superoxide dismutase [Mn], mitochondrial precursor (EC| 1.15.1.1) Length = 233 Score = 29.3 bits (64), Expect = 2.4 Identities = 12/34 (35%), Positives = 20/34 (58%) Frame = -2 Query: 380 LEPVVHGEVLVLHFVQHHRQHHDILNRRILQQID 279 LEP + GE++ LH +HH+ + N+ + Q D Sbjct: 43 LEPAISGEIMQLHHQKHHQTYITNYNKALEQLND 76
>ODFP_BOVIN (Q29438) Outer dense fiber protein| Length = 262 Score = 29.3 bits (64), Expect = 2.4 Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 1/40 (2%) Frame = -1 Query: 399 PCW-CTAS*ACCTRRGSCSSLRPAPPTAPRHPQSPDSPTN 283 PC+ CT+ C CS P P P P SP SP N Sbjct: 201 PCYPCTSPCNPCNPCNPCSPCSPCNPCNPCSPCSPCSPCN 240
>SODM_CANAL (O13401) Superoxide dismutase [Mn], mitochondrial precursor (EC| 1.15.1.1) Length = 234 Score = 29.3 bits (64), Expect = 2.4 Identities = 10/33 (30%), Positives = 21/33 (63%) Frame = -2 Query: 377 EPVVHGEVLVLHFVQHHRQHHDILNRRILQQID 279 EP + G++ +H+ +HH+ + + LN I Q ++ Sbjct: 49 EPYISGQINEIHYTKHHQTYVNNLNASIEQAVE 81
>NOTC4_MOUSE (P31695) Neurogenic locus notch homolog protein 4 precursor (Notch| 4) [Contains: Transforming protein Int-3; Notch 4 extracellular truncation; Notch 4 intracellular domain] Length = 1964 Score = 29.3 bits (64), Expect = 2.4 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = -1 Query: 369 CTRRGSCSSLRPAPPTAPRHPQSPDSP 289 C GSC +L P PP++ R P SP +P Sbjct: 71 CKNGGSCQALLPTPPSS-RSPTSPLTP 96
>SODM4_MAIZE (P41980) Superoxide dismutase [Mn] 3.4, mitochondrial precursor (EC| 1.15.1.1) Length = 233 Score = 28.9 bits (63), Expect = 3.1 Identities = 13/34 (38%), Positives = 21/34 (61%) Frame = -2 Query: 380 LEPVVHGEVLVLHFVQHHRQHHDILNRRILQQID 279 LEP + GE++ LH +HH + N + L+Q+D Sbjct: 45 LEPAISGEIMRLHHQKHHATYVGNYN-KALEQLD 77
>SODM_CHLTR (O84296) Superoxide dismutase [Mn] (EC 1.15.1.1)| Length = 206 Score = 28.9 bits (63), Expect = 3.1 Identities = 11/29 (37%), Positives = 19/29 (65%) Frame = -2 Query: 380 LEPVVHGEVLVLHFVQHHRQHHDILNRRI 294 LEPV+ E++ LH +HH+ + + LN + Sbjct: 18 LEPVISAEIMQLHHQKHHQGYINNLNEAL 46
>SODM_PROFR (P80293) Superoxide dismutase [Mn/Fe] (EC 1.15.1.1)| Length = 201 Score = 28.9 bits (63), Expect = 3.1 Identities = 11/26 (42%), Positives = 17/26 (65%) Frame = -2 Query: 380 LEPVVHGEVLVLHFVQHHRQHHDILN 303 LEP + GE++ LH +HH+ + D N Sbjct: 15 LEPYISGEIMELHHDKHHKAYVDGAN 40
>SODM_CAPAN (O49066) Superoxide dismutase [Mn], mitochondrial precursor (EC| 1.15.1.1) Length = 228 Score = 28.9 bits (63), Expect = 3.1 Identities = 12/34 (35%), Positives = 19/34 (55%) Frame = -2 Query: 380 LEPVVHGEVLVLHFVQHHRQHHDILNRRILQQID 279 LEP + GE++ LH +HH+ + N + Q D Sbjct: 40 LEPAISGEIMQLHHQKHHQTYITNYNNALQQLHD 73
>SODM_CHLMU (Q9PKA0) Superoxide dismutase [Mn] (EC 1.15.1.1)| Length = 205 Score = 28.5 bits (62), Expect = 4.0 Identities = 11/29 (37%), Positives = 19/29 (65%) Frame = -2 Query: 380 LEPVVHGEVLVLHFVQHHRQHHDILNRRI 294 LEPV+ E++ LH +HH+ + + LN + Sbjct: 18 LEPVISAEIMHLHHQKHHQGYINNLNEAL 46
>SODM_ORYSA (Q43008) Superoxide dismutase [Mn], mitochondrial precursor (EC| 1.15.1.1) Length = 231 Score = 28.5 bits (62), Expect = 4.0 Identities = 13/34 (38%), Positives = 21/34 (61%) Frame = -2 Query: 380 LEPVVHGEVLVLHFVQHHRQHHDILNRRILQQID 279 LEP + GE++ LH +HH + N + L+Q+D Sbjct: 43 LEPAISGEIMRLHHQKHHATYVANYN-KALEQLD 75
>SODM_ARATH (O81235) Superoxide dismutase [Mn], mitochondrial precursor (EC| 1.15.1.1) Length = 231 Score = 28.5 bits (62), Expect = 4.0 Identities = 12/34 (35%), Positives = 21/34 (61%) Frame = -2 Query: 380 LEPVVHGEVLVLHFVQHHRQHHDILNRRILQQID 279 LEP + GE++ +H +HH+ + N L+Q+D Sbjct: 43 LEPAISGEIMQIHHQKHHQAYVTNYN-NALEQLD 75
>ODFP_PIG (Q29077) Outer dense fiber protein| Length = 262 Score = 28.5 bits (62), Expect = 4.0 Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 1/40 (2%) Frame = -1 Query: 399 PCW-CTAS*ACCTRRGSCSSLRPAPPTAPRHPQSPDSPTN 283 PC+ CT+ C C+ P P P P SP SP N Sbjct: 201 PCYPCTSPCNPCNPCSPCNPCNPCNPCNPCSPCSPCSPCN 240
>SODM3_MAIZE (P41979) Superoxide dismutase [Mn] 3.3, mitochondrial precursor (EC| 1.15.1.1) Length = 233 Score = 28.1 bits (61), Expect = 5.3 Identities = 14/35 (40%), Positives = 24/35 (68%), Gaps = 1/35 (2%) Frame = -2 Query: 380 LEPVVHGEVLVLHFVQHHRQHHDILN-RRILQQID 279 LEPV+ GE++ LH ++H + ++N + L+QID Sbjct: 45 LEPVISGEIMRLHHQKNHATY--VVNYNKALEQID 77
>SODB_ASPNG (Q3MSU9) Superoxide dismutase [Mn], mitochondrial precursor (EC| 1.15.1.1) Length = 210 Score = 28.1 bits (61), Expect = 5.3 Identities = 10/32 (31%), Positives = 20/32 (62%) Frame = -2 Query: 380 LEPVVHGEVLVLHFVQHHRQHHDILNRRILQQ 285 LEP++ +++ LH +HH+ + + LN + Q Sbjct: 17 LEPIISKQIMELHHKKHHQTYVNNLNAALASQ 48
>CTRO_MOUSE (P49025) Citron Rho-interacting kinase (EC 2.7.11.1) (CRIK)| (Rho-interacting, serine/threonine-protein kinase 21) Length = 2055 Score = 28.1 bits (61), Expect = 5.3 Identities = 9/16 (56%), Positives = 11/16 (68%) Frame = -1 Query: 336 PAPPTAPRHPQSPDSP 289 PAPP P HP+ P +P Sbjct: 1967 PAPPEGPSHPREPSTP 1982
>CTRO_HUMAN (O14578) Citron Rho-interacting kinase (EC 2.7.11.1) (CRIK)| (Rho-interacting, serine/threonine-protein kinase 21) Length = 2027 Score = 28.1 bits (61), Expect = 5.3 Identities = 9/16 (56%), Positives = 11/16 (68%) Frame = -1 Query: 336 PAPPTAPRHPQSPDSP 289 PAPP P HP+ P +P Sbjct: 1941 PAPPEGPSHPREPSTP 1956
>SODM2_CAEEL (P41977) Superoxide dismutase [Mn] 2, mitochondrial precursor (EC| 1.15.1.1) Length = 218 Score = 27.7 bits (60), Expect = 6.9 Identities = 11/27 (40%), Positives = 18/27 (66%) Frame = -2 Query: 380 LEPVVHGEVLVLHFVQHHRQHHDILNR 300 LEPV+ E++ LH +HH + + LN+ Sbjct: 38 LEPVISHEIMQLHHQKHHATYVNNLNQ 64
>SODM1_CAEEL (P31161) Superoxide dismutase [Mn] 1, mitochondrial precursor (EC| 1.15.1.1) Length = 221 Score = 27.7 bits (60), Expect = 6.9 Identities = 11/27 (40%), Positives = 18/27 (66%) Frame = -2 Query: 380 LEPVVHGEVLVLHFVQHHRQHHDILNR 300 LEPV+ E++ LH +HH + + LN+ Sbjct: 38 LEPVISHEIMQLHHQKHHATYVNNLNQ 64
>CO3A1_HUMAN (P02461) Collagen alpha-1(III) chain precursor| Length = 1466 Score = 27.7 bits (60), Expect = 6.9 Identities = 10/23 (43%), Positives = 13/23 (56%) Frame = -1 Query: 357 GSCSSLRPAPPTAPRHPQSPDSP 289 G C ++ P PPTAP P + P Sbjct: 82 GECCAVCPQPPTAPTRPPNGQGP 104
>SODM_PENCH (O75007) Superoxide dismutase [Mn], mitochondrial precursor (EC| 1.15.1.1) Length = 210 Score = 27.7 bits (60), Expect = 6.9 Identities = 11/32 (34%), Positives = 20/32 (62%) Frame = -2 Query: 380 LEPVVHGEVLVLHFVQHHRQHHDILNRRILQQ 285 LEPV+ +++ LH +HH+ + + LN + Q Sbjct: 18 LEPVISKQIMELHHQKHHQTYINNLNAALSAQ 49
>SODM_PRUPE (Q9SM64) Superoxide dismutase [Mn], mitochondrial precursor (EC| 1.15.1.1) Length = 228 Score = 27.7 bits (60), Expect = 6.9 Identities = 11/34 (32%), Positives = 19/34 (55%) Frame = -2 Query: 380 LEPVVHGEVLVLHFVQHHRQHHDILNRRILQQID 279 LEP + G+++ LH HH+ + N+ + Q D Sbjct: 40 LEPAISGDIMQLHHQNHHQTYVTNYNKALEQLHD 73
>SODM_NICPL (P11796) Superoxide dismutase [Mn], mitochondrial precursor (EC| 1.15.1.1) Length = 228 Score = 27.7 bits (60), Expect = 6.9 Identities = 11/34 (32%), Positives = 19/34 (55%) Frame = -2 Query: 380 LEPVVHGEVLVLHFVQHHRQHHDILNRRILQQID 279 LEP + G+++ LH HH+ + N+ + Q D Sbjct: 40 LEPAISGDIMQLHHQNHHQTYVTNYNKALEQLHD 73
>SODM_YEAST (P00447) Superoxide dismutase [Mn], mitochondrial precursor (EC| 1.15.1.1) Length = 233 Score = 27.3 bits (59), Expect = 9.0 Identities = 10/31 (32%), Positives = 19/31 (61%) Frame = -2 Query: 380 LEPVVHGEVLVLHFVQHHRQHHDILNRRILQ 288 LEP + G++ LH+ +HH+ + + N + Q Sbjct: 40 LEPYISGQINELHYTKHHQTYVNGFNTAVDQ 70
>PKHA6_MOUSE (Q7TQG1) Pleckstrin homology domain-containing family A member 6| (Phosphoinositol 3-phosphate-binding protein 3) (PEPP-3) Length = 1173 Score = 27.3 bits (59), Expect = 9.0 Identities = 12/28 (42%), Positives = 16/28 (57%) Frame = -1 Query: 366 TRRGSCSSLRPAPPTAPRHPQSPDSPTN 283 +RRG S++ A P+ P P SP P N Sbjct: 1128 SRRGRMLSVQCATPSPPTSPASPTPPVN 1155
>SODM1_MAIZE (P09233) Superoxide dismutase [Mn] 3.1, mitochondrial precursor (EC| 1.15.1.1) Length = 235 Score = 27.3 bits (59), Expect = 9.0 Identities = 11/31 (35%), Positives = 18/31 (58%) Frame = -2 Query: 380 LEPVVHGEVLVLHFVQHHRQHHDILNRRILQ 288 LEP + GE++ LH +HH + N+ + Q Sbjct: 47 LEPAISGEIMRLHHQKHHATYVANYNKALEQ 77
>MDC1_PIG (Q767L8) Mediator of DNA damage checkpoint protein 1| Length = 2042 Score = 27.3 bits (59), Expect = 9.0 Identities = 14/28 (50%), Positives = 16/28 (57%) Frame = -1 Query: 366 TRRGSCSSLRPAPPTAPRHPQSPDSPTN 283 T R S S PTAP HPQ P +PT+ Sbjct: 1303 TPRASVKSPEQNVPTAPEHPQ-PSTPTD 1329
>SODM_CHAFE (O96347) Superoxide dismutase [Mn], mitochondrial precursor (EC| 1.15.1.1) Length = 224 Score = 27.3 bits (59), Expect = 9.0 Identities = 10/26 (38%), Positives = 17/26 (65%) Frame = -2 Query: 380 LEPVVHGEVLVLHFVQHHRQHHDILN 303 LEP + E++ LH +HH+ + + LN Sbjct: 34 LEPTISAEIMQLHHSKHHQTYVNNLN 59
>SODM_ACIAD (Q59094) Superoxide dismutase [Mn] precursor (EC 1.15.1.1)| Length = 228 Score = 27.3 bits (59), Expect = 9.0 Identities = 9/29 (31%), Positives = 19/29 (65%) Frame = -2 Query: 380 LEPVVHGEVLVLHFVQHHRQHHDILNRRI 294 L+P + + + +H+ +HH+ + D LN +I Sbjct: 37 LQPAIDQQTMEIHYGKHHKAYVDNLNAQI 65 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 25,513,069 Number of Sequences: 219361 Number of extensions: 318530 Number of successful extensions: 2012 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 1853 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1994 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 1365190992 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
