ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl18f04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AE017345.1| Cryptococcus neoformans var. neoformans JEC21 chr... 50 0.006
2ref|XM_571030.1| Cryptococcus neoformans var. neoformans JEC21 h... 50 0.006
3dbj|BA000031.2| Vibrio parahaemolyticus RIMD 2210633 DNA, chromo... 46 0.087
4emb|AL663082.5| Mouse DNA sequence from clone RP23-327G1 on chro... 44 0.34
5gb|AC166746.7| Mus musculus chromosome 19, clone RP24-248H10, co... 42 1.4
6gb|CP000110.1| Synechococcus sp. CC9605, complete genome 42 1.4
7gb|AC175741.5| Mus musculus chromosome 1, clone wi1-1093I15, com... 42 1.4
8gb|AC106461.6| Rattus norvegicus 1 BAC CH230-208N10 (Children's ... 42 1.4
9emb|AL732364.9| Human DNA sequence from clone RP11-430N14 on chr... 42 1.4
10emb|AL161452.19| Human DNA sequence from clone RP11-426A6 on chr... 42 1.4
11gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome 42 1.4
12emb|AJ251029.1|HSA251029 Homo sapiens OBPIIa gene 42 1.4
13emb|AJ251025.1|HSA251025 Homo sapiens OBPIIb gene 42 1.4
14gb|AC002098.1|AC002098 Genomic sequence from Human 9q34, complet... 42 1.4
15gb|AC159312.2| Mus musculus BAC clone RP23-156N21 from chromosom... 40 5.4
16ref|XM_869966.1| PREDICTED: Bos taurus similar to putative phero... 40 5.4
17gb|AC102115.11| Mus musculus chromosome 3, clone RP23-145A18, co... 40 5.4
18gb|AC123946.4| Mus musculus BAC clone RP23-97L17 from chromosome... 40 5.4
19gb|AC121810.3| Mus musculus BAC clone RP23-453G13 from chromosom... 40 5.4
20gb|AC126544.5| Homo sapiens chromosome 17, clone RP11-707O23, co... 40 5.4
21gb|AC069248.4| Homo sapiens chromosome 3 clone RP11-6I21 map 3p,... 40 5.4
22gb|AC100786.2| Homo sapiens chromosome 17, clone CTD-2514K5, com... 40 5.4
23gb|AC008846.7| Homo sapiens chromosome 5 clone CTD-2165G8, compl... 40 5.4
24gb|AC132217.15| Homo sapiens chromosome 11, clone RP11-889I17, c... 40 5.4
25gb|AC024157.4|AC024157 Homo sapiens chromosome 3 clone RP11-233P... 40 5.4
26dbj|AB113314.1| Borrelia duttonii flaA gene for flagellin A prot... 40 5.4
27dbj|AB113313.1| Borrelia duttonii flaA gene for flagellin A prot... 40 5.4
28dbj|AB057547.1| Borrelia duttonii gene for flagellin A, partial ... 40 5.4
29dbj|AB105170.1| Borrelia duttonii flaA gene for flagellin A prot... 40 5.4
30dbj|AB105169.1| Borrelia duttonii flaA gene for flagellin A prot... 40 5.4
31dbj|AB105133.1| Borrelia duttonii gene for flagellin A protein, ... 40 5.4
32dbj|AB105132.1| Borrelia duttonii gene for flagellin A protein, ... 40 5.4
33dbj|AB105131.1| Borrelia duttonii gene for flagellin A protein, ... 40 5.4
34dbj|AB105126.1| Borrelia duttonii gene for flagellin A protein, ... 40 5.4
35dbj|AB105124.1| Borrelia duttonii gene for flagellin A protein, ... 40 5.4
36dbj|AB105118.1| Borrelia duttonii gene for flagellin A protein, ... 40 5.4
37gb|AC004703.1|AC004703 Homo sapiens chromosome 17, clone hRPC.11... 40 5.4
38emb|CR974477.12| Pig DNA sequence from clone CH242-217L7 on chro... 40 5.4
39emb|AL807755.7| Mouse DNA sequence from clone RP23-394N20 on chr... 40 5.4
40emb|AL670035.15| Mouse DNA sequence from clone RP23-295C20 on ch... 40 5.4 
>gb|AE017345.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 5, complete
               sequence
          Length = 1507550

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                        
Query: 70      ccgccgcccgcctccccctttcccc 94
               |||||||||||||||||||||||||
Sbjct: 1395451 ccgccgcccgcctccccctttcccc 1395427
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>ref|XM_571030.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical
          protein (CNE05020) partial mRNA
          Length = 523

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 70 ccgccgcccgcctccccctttcccc 94
          |||||||||||||||||||||||||
Sbjct: 44 ccgccgcccgcctccccctttcccc 68
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>dbj|BA000031.2| Vibrio parahaemolyticus RIMD 2210633 DNA, chromosome 1, complete sequence
          Length = 3288558

 Score = 46.1 bits (23), Expect = 0.087
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 259     tcaagcagcgcttttaaacgcgc 281
               |||||||||||||||||||||||
Sbjct: 2331467 tcaagcagcgcttttaaacgcgc 2331489
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>emb|AL663082.5| Mouse DNA sequence from clone RP23-327G1 on chromosome 11 Contains the 3'
              end of the Ankfy1 gene for ankyrin repeat and FYVE domain
              containing 1, a new gene, the gene for a novel ZZ type zinc
              finger domain containing protein, the 5' end of the Atp2a3
              gene for ubiquitous Ca++ transporting ATPase and two CpG
              islands, complete sequence
          Length = 243654

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                            
Query: 25     cactccctaccccagctccagcagctgctc 54
              ||||||| |||||| |||||||||||||||
Sbjct: 220775 cactccccaccccacctccagcagctgctc 220804
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>gb|AC166746.7| Mus musculus chromosome 19, clone RP24-248H10, complete sequence
          Length = 156084

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 157   ccctgtcctctttctcccccctccc 181
             ||||||||||| |||||||||||||
Sbjct: 80031 ccctgtcctctctctcccccctccc 80055
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>gb|CP000110.1| Synechococcus sp. CC9605, complete genome
          Length = 2510659

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 37      cagctccagcagctgctcccg 57
               |||||||||||||||||||||
Sbjct: 1704553 cagctccagcagctgctcccg 1704573
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>gb|AC175741.5| Mus musculus chromosome 1, clone wi1-1093I15, complete sequence
          Length = 39340

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 157  ccctgtcctctttctcccccctccc 181
            ||||||||||| |||||||||||||
Sbjct: 8960 ccctgtcctctctctcccccctccc 8984
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>gb|AC106461.6| Rattus norvegicus 1 BAC CH230-208N10 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 212829

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 197   ctcccgccccatccctcttcttccc 221
             ||||| |||||||||||||||||||
Sbjct: 79561 ctccctccccatccctcttcttccc 79585
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>emb|AL732364.9| Human DNA sequence from clone RP11-430N14 on chromosome 9 Contains the
             3' end of the ABO gene for ABO blood group (transferase A
             alpha 1-3-N-acetylgalactosaminyltransferase; transferase B
             alpha 1-3-galactosyltransferase) pseudogene ABO-*O01
             allele, the gene for a novel protein similar to
             odorant-binding protein 2B (OBP2B), the gene for
             odorant-binding protein 2B (OBP2B) and two CpG islands,
             complete sequence
          Length = 87903

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 35    cccagctccagcagctgctcc 55
             |||||||||||||||||||||
Sbjct: 35517 cccagctccagcagctgctcc 35537
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>emb|AL161452.19| Human DNA sequence from clone RP11-426A6 on chromosome 9 Contains the
             OBP2A gene for odorant-binding protein 2A, the LCN1 gene
             for lipocalin 1, the MRPS2 gene for mitochondrial
             ribosomal protein S2, gene MGC29761, a novel gene, gene
             KIAA0649, a novel gene, a novel gene, a suppressor of
             cytokine signaling 5 (SOCS5) pseudogene and two CpG
             islands, complete sequence
          Length = 153231

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 35    cccagctccagcagctgctcc 55
             |||||||||||||||||||||
Sbjct: 11272 cccagctccagcagctgctcc 11292
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>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 313     ccgccgagccgctggtcgcgccgcc 337
               |||||||||||||||| ||||||||
Sbjct: 3753281 ccgccgagccgctggtggcgccgcc 3753257
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>emb|AJ251029.1|HSA251029 Homo sapiens OBPIIa gene
          Length = 10664

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 35   cccagctccagcagctgctcc 55
            |||||||||||||||||||||
Sbjct: 7869 cccagctccagcagctgctcc 7849
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>emb|AJ251025.1|HSA251025 Homo sapiens OBPIIb gene
          Length = 13591

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 35    cccagctccagcagctgctcc 55
             |||||||||||||||||||||
Sbjct: 10910 cccagctccagcagctgctcc 10890
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>gb|AC002098.1|AC002098 Genomic sequence from Human 9q34, complete sequence
          Length = 36612

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 35   cccagctccagcagctgctcc 55
            |||||||||||||||||||||
Sbjct: 4782 cccagctccagcagctgctcc 4802
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>gb|AC159312.2| Mus musculus BAC clone RP23-156N21 from chromosome 12, complete sequence
          Length = 205080

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 162    tcctctttctcccccctccc 181
              ||||||||||||||||||||
Sbjct: 131160 tcctctttctcccccctccc 131179
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>ref|XM_869966.1| PREDICTED: Bos taurus similar to putative pheromone receptor
           Go-VN13C (LOC617665), mRNA
          Length = 1020

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 36  ccagctccagcagctgctcccggctctc 63
           ||||||||||||||| | ||||||||||
Sbjct: 685 ccagctccagcagctccccccggctctc 658
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>gb|AC102115.11| Mus musculus chromosome 3, clone RP23-145A18, complete sequence
          Length = 184436

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 21     tcctcactccctaccccagc 40
              ||||||||||||||||||||
Sbjct: 104333 tcctcactccctaccccagc 104314
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>gb|AC123946.4| Mus musculus BAC clone RP23-97L17 from chromosome 12, complete sequence
          Length = 193610

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 162   tcctctttctcccccctccc 181
             ||||||||||||||||||||
Sbjct: 89884 tcctctttctcccccctccc 89903
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>gb|AC121810.3| Mus musculus BAC clone RP23-453G13 from chromosome 1, complete sequence
          Length = 208102

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 69     tccgccgcccgcctccccctttcc 92
              |||||||||| |||||||||||||
Sbjct: 110897 tccgccgcccacctccccctttcc 110920
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>gb|AC126544.5| Homo sapiens chromosome 17, clone RP11-707O23, complete sequence
          Length = 172940

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 33     accccagctccagcagctgc 52
              ||||||||||||||||||||
Sbjct: 117036 accccagctccagcagctgc 117055
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>gb|AC069248.4| Homo sapiens chromosome 3 clone RP11-6I21 map 3p, complete sequence
          Length = 157493

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 27    ctccctaccccagctccagc 46
             ||||||||||||||||||||
Sbjct: 70798 ctccctaccccagctccagc 70817
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>gb|AC100786.2| Homo sapiens chromosome 17, clone CTD-2514K5, complete sequence
          Length = 177163

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 157    ccctgtcctctttctccccc 176
              ||||||||||||||||||||
Sbjct: 129916 ccctgtcctctttctccccc 129935
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>gb|AC008846.7| Homo sapiens chromosome 5 clone CTD-2165G8, complete sequence
          Length = 92740

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 33    accccagctccagcagctgc 52
             ||||||||||||||||||||
Sbjct: 48031 accccagctccagcagctgc 48050
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>gb|AC132217.15| Homo sapiens chromosome 11, clone RP11-889I17, complete sequence
          Length = 170027

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 37     cagctccagcagctgctccc 56
              ||||||||||||||||||||
Sbjct: 147689 cagctccagcagctgctccc 147670
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>gb|AC024157.4|AC024157 Homo sapiens chromosome 3 clone RP11-233P1 map 3p, complete sequence
          Length = 160667

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 27   ctccctaccccagctccagc 46
            ||||||||||||||||||||
Sbjct: 7956 ctccctaccccagctccagc 7937
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>dbj|AB113314.1| Borrelia duttonii flaA gene for flagellin A protein, partial cds,
           isolate:MS3
          Length = 341

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 36  ccagctccagcagctgctcc 55
           ||||||||||||||||||||
Sbjct: 220 ccagctccagcagctgctcc 239
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>dbj|AB113313.1| Borrelia duttonii flaA gene for flagellin A protein, partial cds,
           isolate:EM14
          Length = 341

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 36  ccagctccagcagctgctcc 55
           ||||||||||||||||||||
Sbjct: 220 ccagctccagcagctgctcc 239
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>dbj|AB057547.1| Borrelia duttonii gene for flagellin A, partial cds, strain:TnB
          Length = 341

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 36  ccagctccagcagctgctcc 55
           ||||||||||||||||||||
Sbjct: 220 ccagctccagcagctgctcc 239
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>dbj|AB105170.1| Borrelia duttonii flaA gene for flagellin A protein, partial cds,
           isolate:MS3
          Length = 341

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 36  ccagctccagcagctgctcc 55
           ||||||||||||||||||||
Sbjct: 220 ccagctccagcagctgctcc 239
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>dbj|AB105169.1| Borrelia duttonii flaA gene for flagellin A protein, partial cds,
           isolate:EM14
          Length = 341

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 36  ccagctccagcagctgctcc 55
           ||||||||||||||||||||
Sbjct: 220 ccagctccagcagctgctcc 239
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>dbj|AB105133.1| Borrelia duttonii gene for flagellin A protein, partial cds,
           isolate:Tnh166
          Length = 341

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 36  ccagctccagcagctgctcc 55
           ||||||||||||||||||||
Sbjct: 220 ccagctccagcagctgctcc 239
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>dbj|AB105132.1| Borrelia duttonii gene for flagellin A protein, partial cds,
           isolate:Tnh181
          Length = 341

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 36  ccagctccagcagctgctcc 55
           ||||||||||||||||||||
Sbjct: 220 ccagctccagcagctgctcc 239
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>dbj|AB105131.1| Borrelia duttonii gene for flagellin A protein, partial cds,
           isolate:Tnh75
          Length = 341

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 36  ccagctccagcagctgctcc 55
           ||||||||||||||||||||
Sbjct: 220 ccagctccagcagctgctcc 239
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>dbj|AB105126.1| Borrelia duttonii gene for flagellin A protein, partial cds,
           isolate:Tnh3
          Length = 341

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 36  ccagctccagcagctgctcc 55
           ||||||||||||||||||||
Sbjct: 220 ccagctccagcagctgctcc 239
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>dbj|AB105124.1| Borrelia duttonii gene for flagellin A protein, partial cds,
           isolate:Tnh114
          Length = 341

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 36  ccagctccagcagctgctcc 55
           ||||||||||||||||||||
Sbjct: 220 ccagctccagcagctgctcc 239
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>dbj|AB105118.1| Borrelia duttonii gene for flagellin A protein, partial cds,
           isolate:Tnf1
          Length = 341

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 36  ccagctccagcagctgctcc 55
           ||||||||||||||||||||
Sbjct: 220 ccagctccagcagctgctcc 239
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>gb|AC004703.1|AC004703 Homo sapiens chromosome 17, clone hRPC.1164_O_3, complete sequence
          Length = 104147

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 33    accccagctccagcagctgc 52
             ||||||||||||||||||||
Sbjct: 37785 accccagctccagcagctgc 37766
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>emb|CR974477.12| Pig DNA sequence from clone CH242-217L7 on chromosome 17, complete
             sequence
          Length = 204661

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 21    tcctcactccctaccccagctccagcag 48
             |||||||||||||||||| | |||||||
Sbjct: 28352 tcctcactccctaccccacccccagcag 28325
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>emb|AL807755.7| Mouse DNA sequence from clone RP23-394N20 on chromosome X, complete
            sequence
          Length = 203068

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 155  gtccctgtcctctttctccc 174
            ||||||||||||||||||||
Sbjct: 7781 gtccctgtcctctttctccc 7800
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>emb|AL670035.15| Mouse DNA sequence from clone RP23-295C20 on chromosome 4, complete
             sequence
          Length = 201142

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 36    ccagctccagcagctgctcc 55
             ||||||||||||||||||||
Sbjct: 49067 ccagctccagcagctgctcc 49086


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,808,135
Number of Sequences: 3902068
Number of extensions: 2808135
Number of successful extensions: 72151
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 71992
Number of HSP's gapped (non-prelim): 159
length of query: 402
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 380
effective length of database: 17,147,199,772
effective search space: 6515935913360
effective search space used: 6515935913360
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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