Clone Information

BLAST Search Result

Clone Name	bastl18f02
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	R13L3_ARATH (Q9STE7) Putative disease resistance RPP13-like prot...	45	4e-05
2	DRL13_ARATH (Q9XIF0) Putative disease resistance protein At1g59780	43	2e-04
3	RPP13_ARATH (Q9M667) Disease resistance protein RPP13 (Resistanc...	40	0.001
4	DRL4_ARATH (Q9SX38) Putative disease resistance protein At1g50180	38	0.007
5	R13L2_ARATH (Q9STE5) Putative disease resistance RPP13-like prot...	37	0.011
6	RX24L_ARATH (Q9C646) Probable disease resistance protein RXW24L	36	0.019
7	DRL8_ARATH (Q8W3K3) Putative disease resistance protein At1g58400	35	0.032
8	CAC1B_DISOM (P56698) Probable voltage-dependent N-type calcium c...	35	0.032
9	DRL12_ARATH (Q9LQ54) Probable disease resistance protein At1g596...	35	0.055
10	NFIX_CHICK (Q90932) Nuclear factor 1 X-type (Nuclear factor 1/X)...	32	0.36
11	VGLB_HSVA1 (Q04463) Glycoprotein B precursor	31	0.61
12	BRM_DROME (P25439) Homeotic gene regulator (EC 3.6.1.-) (ATP-dep...	30	1.0
13	SPEG_RAT (Q63638) Striated muscle-specific serine/threonine prot...	30	1.0
14	UBP1_SCHPO (Q9USM5) Probable ubiquitin carboxyl-terminal hydrola...	30	1.0
15	SPEG_MOUSE (Q62407) Striated muscle-specific serine/threonine pr...	30	1.0
16	LIPA_PSEFL (P26504) Lipase precursor (EC 3.1.1.3) (Triacylglycer...	30	1.4
17	MUC2_HUMAN (Q02817) Mucin-2 precursor (Intestinal mucin 2)	30	1.4
18	ZN219_HUMAN (Q9P2Y4) Zinc finger protein 219	30	1.8
19	DOK3_MOUSE (Q9QZK7) Docking protein 3 (Downstream of tyrosine ki...	30	1.8
20	TOB2_HUMAN (Q14106) Tob2 protein (Transducer of erbB-2 2)	30	1.8
21	FLIG_BORBU (P52610) Flagellar motor switch protein fliG	30	1.8
22	CPKA_PYRAB (Q9UWF8) Carbamate kinase (EC 2.7.2.2) (Carbamate kin...	29	2.3
23	GBX1_MOUSE (P82976) Homeobox protein GBX-1 (Gastrulation and bra...	29	2.3
24	IF2_PROAC (Q6A7M5) Translation initiation factor IF-2	29	2.3
25	TOB2_MOUSE (Q9JM55) Tob2 protein (Transducer of erbB-2 2)	29	2.3
26	K1683_HUMAN (Q9H0B3) Protein KIAA1683	29	2.3
27	CUTL1_CANFA (P39881) Homeobox protein cut-like 1 (CCAAT displace...	29	3.0
28	COIA1_HUMAN (P39060) Collagen alpha-1(XVIII) chain precursor [Co...	29	3.0
29	SLAP1_CLOTM (Q06852) Cell surface glycoprotein 1 precursor (Oute...	29	3.0
30	IF2_STRCO (Q8CJQ8) Translation initiation factor IF-2	29	3.0
31	VE2_COPV (Q89420) Regulatory protein E2	29	3.0
32	RUSC2_HUMAN (Q8N2Y8) RUN and SH3 domain-containing protein 2	28	4.0
33	RLF_HUMAN (Q13129) Zinc finger protein Rlf (Rearranged L-myc fus...	28	4.0
34	DLDH_BUCAP (Q8K9T7) Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (E3...	28	4.0
35	TBX2_HUMAN (Q13207) T-box transcription factor TBX2 (T-box prote...	28	4.0
36	IAA1_ORYSA (Q5VRD1) Auxin-responsive protein IAA1 (Indoleacetic ...	28	5.2
37	WC1_NEUCR (Q01371) White collar 1 protein (WC1)	28	5.2
38	RP1_HUMAN (P56715) Oxygen-regulated protein 1 (Retinitis pigment...	28	5.2
39	IAA26_ORYSA (Q652A1) Auxin-responsive protein IAA26 (Indoleaceti...	28	5.2
40	TERF2_CHICK (Q9PU53) Telomeric repeat-binding factor 2 (TTAGGG r...	28	5.2
41	IAA15_ORYSA (Q6AT10) Auxin-responsive protein IAA15 (Indoleaceti...	28	5.2
42	POLN_RUBVT (P13889) Nonstructural polyprotein [Contains: Proteas...	28	5.2
43	DMWD_HUMAN (Q09019) Dystrophia myotonica WD repeat-containing pr...	28	5.2
44	NIFX_RHISN (P55675) Protein nifX	28	5.2
45	SP96_DICDI (P14328) Spore coat protein SP96	28	6.8
46	RXRB_RAT (P49743) Retinoic acid receptor RXR-beta (Retinoid X re...	28	6.8
47	ATRN_HUMAN (O75882) Attractin precursor (Mahogany homolog) (DPPT-L)	28	6.8
48	TSH_DROME (P22265) Protein teashirt	28	6.8
49	RXRB_HUMAN (P28702) Retinoic acid receptor RXR-beta (Retinoid X ...	28	6.8
50	RXRB_CANFA (Q5TJF7) Retinoic acid receptor RXR-beta (Retinoid X ...	28	6.8
51	GOGA4_MOUSE (Q91VW5) Golgin subfamily A member 4 (tGolgin-1)	28	6.8
52	HXA11_HUMAN (P31270) Homeobox protein Hox-A11 (Hox-1I)	28	6.8
53	EXTN_TOBAC (P13983) Extensin precursor (Cell wall hydroxyproline...	28	6.8
54	UVRA_LEPIN (Q8F435) UvrABC system protein A (UvrA protein) (Exci...	28	6.8
55	UVRA_LEPIC (Q72RM8) UvrABC system protein A (UvrA protein) (Exci...	28	6.8
56	SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1	28	6.8
57	GAG_MLVF5 (P26807) Gag polyprotein (Core polyprotein) [Contains:...	28	6.8
58	CH601_VIBCH (Q9KNR7) 60 kDa chaperonin 1 (Protein Cpn60 1) (groE...	28	6.8
59	RXRB_MOUSE (P28704) Retinoic acid receptor RXR-beta (Retinoid X ...	28	6.8
60	PHYB_SORBI (P93527) Phytochrome B	28	6.8
61	YEY8_YEAST (P40095) Hypothetical 63.7 kDa protein in BEM2-NCB1 i...	28	6.8
62	BSN_MOUSE (O88737) Bassoon protein	28	6.8
63	LAMBV_CHICK (Q01636) Laminin beta-1 chain variant (Laminin beta-...	28	6.8
64	IAA4_ARATH (P33077) Auxin-responsive protein IAA4 (Indoleacetic ...	27	8.8
65	ISPE_SYNJB (Q2JLP6) 4-diphosphocytidyl-2-C-methyl-D-erythritol k...	27	8.8
66	SC23A_MOUSE (Q01405) Protein transport protein Sec23A (SEC23-rel...	27	8.8
67	SC23A_HUMAN (Q15436) Protein transport protein Sec23A (SEC23-rel...	27	8.8
68	IAA6_ORYSA (Q8LQ74) Auxin-responsive protein IAA6 (Indoleacetic ...	27	8.8
69	ATG23_KLULA (Q6CWA7) Autophagy-related protein 23	27	8.8
70	NOL10_BRARE (Q802W4) Nucleolar protein 10	27	8.8
71	FLID_TREPA (O83842) Flagellar hook-associated protein 2 (HAP2) (...	27	8.8
72	TBX2_MOUSE (Q60707) T-box transcription factor TBX2 (T-box prote...	27	8.8
73	PTR1_LEIMA (Q01782) Pteridine reductase 1 (EC 1.5.1.33) (H regio...	27	8.8
74	JAD1C_MOUSE (P41230) Jumonji/ARID domain-containing protein 1C (...	27	8.8
75	YCYL_CAEEL (Q22523) Hypothetical zinc metalloproteinase T16A9.4 ...	27	8.8
76	RGA7_SCHPO (O94466) Probable Rho-GTPase-activating protein 7	27	8.8
77	COQ5_PONPY (Q5RBK6) Ubiquinone biosynthesis methyltransferase CO...	27	8.8
78	COQ5_HUMAN (Q5HYK3) Ubiquinone biosynthesis methyltransferase CO...	27	8.8
79	PRG4_HUMAN (Q92954) Proteoglycan-4 precursor (Lubricin) (Megakar...	27	8.8
80	IE68_PRVKA (P24827) Immediate-early protein RSP40	27	8.8
81	GPNMB_RAT (Q6P7C7) Transmembrane glycoprotein NMB precursor	27	8.8

>R13L3_ARATH (Q9STE7) Putative disease resistance RPP13-like protein 3|
          Length = 847

 Score = 45.1 bits (105), Expect = 4e-05
 Identities = 26/77 (33%), Positives = 38/77 (49%)
 Frame = +3

Query: 174 LVSAATGALKPVLEKLGALAGDEYKRFKGVRGDIRSLTRELTAMEAFLLKMSEDEDPDVQ 353
           +V A TG    VL K+G    +E     GV+ D+  L  ELT +  +L  +   E  D  
Sbjct: 1   MVDAVTGF---VLNKIGGYLINEVLALMGVKDDLEELKTELTCIHGYLKDVEAREREDEV 57

Query: 354 DKVWMNEVRELSYDMED 404
            K W   V +++YD+ED
Sbjct: 58  SKEWTKLVLDIAYDIED 74

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>DRL13_ARATH (Q9XIF0) Putative disease resistance protein At1g59780|
          Length = 906

 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 23/67 (34%), Positives = 35/67 (52%)
 Frame = +3

Query: 210 LEKLGALAGDEYKRFKGVRGDIRSLTRELTAMEAFLLKMSEDEDPDVQDKVWMNEVRELS 389
           +EKL  L   EY+RF+GV   I  L  +L  + AFL      +      +  + E++E++
Sbjct: 15  VEKLWKLLSQEYERFQGVEEQITELRDDLKMLMAFLSDADAKKQTRALARNCLEEIKEIT 74

Query: 390 YDMEDSI 410
           YD ED I
Sbjct: 75  YDAEDII 81

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>RPP13_ARATH (Q9M667) Disease resistance protein RPP13 (Resistance to|
           Peronospora parasitica protein 13)
          Length = 835

 Score = 40.0 bits (92), Expect = 0.001
 Identities = 21/66 (31%), Positives = 32/66 (48%)
 Frame = +3

Query: 207 VLEKLGALAGDEYKRFKGVRGDIRSLTRELTAMEAFLLKMSEDEDPDVQDKVWMNEVREL 386
           V+ K+G    +E   F  V+ D+  L  ELT +  +L  +   E  D   K W   V + 
Sbjct: 9   VVGKIGNYLIEEASMFMAVKEDLEELKTELTCIHGYLKDVEAREREDEVSKEWSKLVLDF 68

Query: 387 SYDMED 404
           +YD+ED
Sbjct: 69  AYDVED 74

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>DRL4_ARATH (Q9SX38) Putative disease resistance protein At1g50180|
          Length = 839

 Score = 37.7 bits (86), Expect = 0.007
 Identities = 21/73 (28%), Positives = 34/73 (46%)
 Frame = +3

Query: 186 ATGALKPVLEKLGALAGDEYKRFKGVRGDIRSLTRELTAMEAFLLKMSEDEDPDVQDKVW 365
           A   +   ++KLG L  +E     G+   ++ L  EL  +  FL    E +    + + W
Sbjct: 2   AEAIVSVTVQKLGQLLLEEPLFLFGIGDQVKQLQDELKRLNCFLKDADEKQHESERVRNW 61

Query: 366 MNEVRELSYDMED 404
           +  +RE SYD ED
Sbjct: 62  VAGIREASYDAED 74

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>R13L2_ARATH (Q9STE5) Putative disease resistance RPP13-like protein 2|
          Length = 847

 Score = 37.0 bits (84), Expect = 0.011
 Identities = 19/66 (28%), Positives = 33/66 (50%)
 Frame = +3

Query: 207 VLEKLGALAGDEYKRFKGVRGDIRSLTRELTAMEAFLLKMSEDEDPDVQDKVWMNEVREL 386
           V+ K+     +E     GV+ D+  L  ELT ++ +L  +   +  D   K W   V ++
Sbjct: 9   VVGKIDNYLIEEAPMLIGVKDDLEELKTELTCIQVYLKNVEVCDKEDEVSKEWTKLVLDI 68

Query: 387 SYDMED 404
           +YD+ED
Sbjct: 69  AYDVED 74

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>RX24L_ARATH (Q9C646) Probable disease resistance protein RXW24L|
          Length = 899

 Score = 36.2 bits (82), Expect = 0.019
 Identities = 19/67 (28%), Positives = 32/67 (47%)
 Frame = +3

Query: 210 LEKLGALAGDEYKRFKGVRGDIRSLTRELTAMEAFLLKMSEDEDPDVQDKVWMNEVRELS 389
           +EKL      EY +FKGV   +  L   L  +++FL      +      +  + E++++ 
Sbjct: 8   VEKLWDRLSQEYDQFKGVEDQVTELKSNLNLLKSFLKDADAKKHISEMVRHCVEEIKDIV 67

Query: 390 YDMEDSI 410
           YD ED I
Sbjct: 68  YDTEDII 74

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>DRL8_ARATH (Q8W3K3) Putative disease resistance protein At1g58400|
          Length = 910

 Score = 35.4 bits (80), Expect = 0.032
 Identities = 19/67 (28%), Positives = 34/67 (50%)
 Frame = +3

Query: 210 LEKLGALAGDEYKRFKGVRGDIRSLTRELTAMEAFLLKMSEDEDPDVQDKVWMNEVRELS 389
           +EKL      EY++F+GV   I  L   L  +++FL      ++     +  + E++E+ 
Sbjct: 10  VEKLWDRLTQEYEQFQGVEDRIAELKSNLNLLKSFLKDAEAKKNTSQMVRHCVEEIKEIV 69

Query: 390 YDMEDSI 410
           YD E+ I
Sbjct: 70  YDTENMI 76

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>CAC1B_DISOM (P56698) Probable voltage-dependent N-type calcium channel alpha-1B|
            subunit (Voltage-gated calcium channel alpha subunit
            Cav2.2) (DOE-4)
          Length = 2326

 Score = 35.4 bits (80), Expect = 0.032
 Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
 Frame = +2

Query: 2    KSSKEEADDVELTRRPEPTLSESFPLLEL------EGPRPTTFTNHKAASPSPGSTTRNH 163
            +SSKE        RRP P+ +E             E P+P +  + ++ASPS G+    H
Sbjct: 2081 QSSKERERGRSQERRP-PSSAEKQRYYSCDRYGSREPPQPRSTDHSRSASPSTGTEQGFH 2139

Query: 164  GGGSGECSDRSLETSPGEARRS-GRR 238
              GSG  +D  L+++ G +  S GRR
Sbjct: 2140 RQGSGSVNDSPLQSASGSSTPSRGRR 2165

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>DRL12_ARATH (Q9LQ54) Probable disease resistance protein At1g59620 (CW9)|
          Length = 695

 Score = 34.7 bits (78), Expect = 0.055
 Identities = 21/67 (31%), Positives = 30/67 (44%)
 Frame = +3

Query: 210 LEKLGALAGDEYKRFKGVRGDIRSLTRELTAMEAFLLKMSEDEDPDVQDKVWMNEVRELS 389
           +EKL  L   E  RF+GV+     L  +L  +  FL      +         + EV+E+ 
Sbjct: 10  VEKLWDLLVRESDRFQGVKKQFNELRSDLNKLRCFLEDADAKKHQSAMVSNTVKEVKEIV 69

Query: 390 YDMEDSI 410
           YD ED I
Sbjct: 70  YDTEDII 76

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>NFIX_CHICK (Q90932) Nuclear factor 1 X-type (Nuclear factor 1/X) (NF1-X)|
           (NFI-X) (NF-I/X) (CCAAT-box-binding transcription
           factor) (CTF) (TGGCA-binding protein)
          Length = 431

 Score = 32.0 bits (71), Expect = 0.36
 Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
 Frame = +2

Query: 29  VELTRRP--EPTLS-----ESFPLLELEGPRPTTFTNHKAASPSPGSTTRNHGGGSGECS 187
           V L RRP   PT S     ++    +LEGP    F +    SP+PGS+    GG      
Sbjct: 260 VTLGRRPLGPPTASGPKRPKALDEGDLEGPGDDVFYSGPGRSPAPGSSQGPWGG------ 313

Query: 188 DRSLETSPGEARRSGR 235
              ++TSP   ++SG+
Sbjct: 314 --DVDTSPATLKKSGK 327

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>VGLB_HSVA1 (Q04463) Glycoprotein B precursor|
          Length = 933

 Score = 31.2 bits (69), Expect = 0.61
 Identities = 21/63 (33%), Positives = 23/63 (36%)
 Frame = +2

Query: 50  EPTLSESFPLLELEGPRPTTFTNHKAASPSPGSTTRNHGGGSGECSDRSLETSPGEARRS 229
           EP     +   + EG  PT        SP P    R  GGGSG         SPG   RS
Sbjct: 57  EPVEDGDYDEYDDEGHTPTDVPGSGPESPGPDRPPRGPGGGSGR-----RRGSPGNGTRS 111

Query: 230 GRR 238
             R
Sbjct: 112 AAR 114

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>BRM_DROME (P25439) Homeotic gene regulator (EC 3.6.1.-) (ATP-dependent|
           helicase brm) (Protein brahma)
          Length = 1638

 Score = 30.4 bits (67), Expect = 1.0
 Identities = 15/26 (57%), Positives = 17/26 (65%)
 Frame = -1

Query: 405 SPPCHRRAPAPHSSTPYPEHQDPHPL 328
           +PP    AP+PHS  PYP HQ P PL
Sbjct: 21  APPSQSPAPSPHS--PYP-HQQPGPL 43

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>SPEG_RAT (Q63638) Striated muscle-specific serine/threonine protein kinase (EC|
            2.7.11.1) (Aortic preferentially expressed protein 1)
            (APEG-1)
          Length = 3259

 Score = 30.4 bits (67), Expect = 1.0
 Identities = 35/106 (33%), Positives = 46/106 (43%), Gaps = 19/106 (17%)
 Frame = +2

Query: 5    SSKEEADDVELTRRPEPTLSESFP-LLELEGPRPTTFTNHKAAS--------PSPGSTTR 157
            S  +E+ D    RRPE     S    L   G R    + HKAAS        PSPG+T  
Sbjct: 1999 SPGQESPDGPSPRRPELRRGSSAESALPRVGSREPGRSLHKAASVELPQRRSPSPGATRL 2058

Query: 158  NHGG-GSGECS-------DRSLETSPGEARRSGRR--*VQAVQGRA 265
              GG G GE +        R L   P + + SG R   ++++ GRA
Sbjct: 2059 TRGGLGEGEYAQRLQALRQRLLRGGPEDGKVSGLRGPLLESLGGRA 2104

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>UBP1_SCHPO (Q9USM5) Probable ubiquitin carboxyl-terminal hydrolase 1 (EC|
           3.1.2.15) (Ubiquitin thioesterase 1) (Ubiquitin-specific
           processing protease 1) (Deubiquitinating enzyme 1)
          Length = 849

 Score = 30.4 bits (67), Expect = 1.0
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +3

Query: 249 RFKGVRGDIRSLT--RELTAMEAFLLKMSEDEDPDVQDKVWMNEVRELSYDM 398
           RF G  GD+R     R+L     F L + +   P ++D  W++  + + YD+
Sbjct: 741 RFSGHGGDLRRRRKRRDLVVYPVFDLNLKQFLSPFIKDHEWLSSQKSMLYDL 792

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>SPEG_MOUSE (Q62407) Striated muscle-specific serine/threonine protein kinase (EC|
            2.7.11.1) (Aortic preferentially expressed protein 1)
            (APEG-1)
          Length = 3262

 Score = 30.4 bits (67), Expect = 1.0
 Identities = 35/106 (33%), Positives = 46/106 (43%), Gaps = 19/106 (17%)
 Frame = +2

Query: 5    SSKEEADDVELTRRPEPTLSESFP-LLELEGPRPTTFTNHKAAS--------PSPGSTTR 157
            S  +E+ D    RRPE     S    L   G R    + HKAAS        PSPG+T  
Sbjct: 1999 SPGQESPDGPSPRRPELRRGSSAESALPRVGSREPGRSLHKAASVELPQRRSPSPGATRL 2058

Query: 158  NHGG-GSGECS-------DRSLETSPGEARRSGRR--*VQAVQGRA 265
              GG G GE +        R L   P + + SG R   ++++ GRA
Sbjct: 2059 TRGGLGEGEYAQRLQALRQRLLRGGPEDGKVSGLRGPLLESLGGRA 2104

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>LIPA_PSEFL (P26504) Lipase precursor (EC 3.1.1.3) (Triacylglycerol lipase)|
          Length = 449

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = -1

Query: 291 HG*AT*CRHARP*TACTHRLP--ERRASPGLVSRLLSLHSPEPPPWLRVVLP 142
           HG    CRH     A  HRLP  +  A PG+++R       + PPW R   P
Sbjct: 43  HGLGLGCRHTGRGVARQHRLPGSDPPAFPGILTR-------KRPPWTRCTQP 87

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>MUC2_HUMAN (Q02817) Mucin-2 precursor (Intestinal mucin 2)|
          Length = 5179

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +2

Query: 29   VELTRRPEPTLSESFPLLELEGPRPTTFTNHKAASPSPGSTT 154
            +  T  P PT + S P+     P PTT  +    +PSP +TT
Sbjct: 1442 ITTTTTPLPTTTPSPPISTTTTPPPTTTPSPPTTTPSPPTTT 1483

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>ZN219_HUMAN (Q9P2Y4) Zinc finger protein 219|
          Length = 722

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 23/71 (32%), Positives = 26/71 (36%)
 Frame = +2

Query: 2   KSSKEEADDVELTRRPEPTLSESFPLLELEGPRPTTFTNHKAASPSPGSTTRNHGGGSGE 181
           K S + A  VE    P P  S + P               +    SPG T RN  GG  E
Sbjct: 579 KPSPQPATWVEGASSPRPPSSGAGP-------------GSRRKPASPGRTLRNGRGGEAE 625

Query: 182 CSDRSLETSPG 214
             D SL   PG
Sbjct: 626 PLDLSLRAGPG 636

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>DOK3_MOUSE (Q9QZK7) Docking protein 3 (Downstream of tyrosine kinase 3)|
           (P62(dok)-like protein) (DOK-L)
          Length = 444

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 19/34 (55%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -1

Query: 237 RLPERRASPGL-VSRLLSLHSPEPPPWLRVVLPG 139
           RLPE   SP   + R LSL S EPP  LR V PG
Sbjct: 257 RLPELAMSPPCPLPRALSLPSLEPPGELREVAPG 290

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>TOB2_HUMAN (Q14106) Tob2 protein (Transducer of erbB-2 2)|
          Length = 344

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = +2

Query: 20  ADDVELTRRPEPTLSES-FPLLELEGPRPTTFTNHKAASPSPGSTTRNHGGGS 175
           + D  L+  P P+  +S  P       +P TFT    A+   GST    GGG+
Sbjct: 145 SQDSSLSNSPSPSFGQSPSPTFIPRSAQPITFTTASFAATKFGSTKMKKGGGA 197

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>FLIG_BORBU (P52610) Flagellar motor switch protein fliG|
          Length = 344

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 12/50 (24%), Positives = 28/50 (56%)
 Frame = +3

Query: 213 EKLGALAGDEYKRFKGVRGDIRSLTRELTAMEAFLLKMSEDEDPDVQDKV 362
           +KL +L+ ++Y    GV   +  +       E F+++  E+EDP++ +++
Sbjct: 191 KKLASLSSEDYTSAGGVDNVVEIINMADRKTEKFIIESLEEEDPELAEEI 240

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>CPKA_PYRAB (Q9UWF8) Carbamate kinase (EC 2.7.2.2) (Carbamate kinase-like|
           carbamoylphosphate synthetase)
          Length = 314

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 17/62 (27%), Positives = 30/62 (48%)
 Frame = +3

Query: 87  WKVLVPPPSQITRRHLHLQVAPLATMEAALVSAATGALKPVLEKLGALAGDEYKRFKGVR 266
           W+ +VP P    +RH+  +       +  +V A+ G   PV+E+ G + G E    K + 
Sbjct: 161 WRRVVPSPDP--KRHVEAETIKKLVEDGVIVIASGGGGVPVIEEDGEIKGVEAVIDKDLA 218

Query: 267 GD 272
           G+
Sbjct: 219 GE 220

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>GBX1_MOUSE (P82976) Homeobox protein GBX-1 (Gastrulation and brain-specific|
           homeobox protein 1)
          Length = 418

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = +2

Query: 47  PEPTLSESFPLLELEGPRPTTFTNHKAASPS--PGSTTRNHGGGSGECSDRSLETSPG 214
           P P  SE+FP L  EG +  +    K   P+  P  + +   G  G+  D  L++S G
Sbjct: 223 PPPHFSETFPSLPAEG-KVYSSDEEKLEPPAGDPAGSEQEEEGSGGDSEDSFLDSSAG 279

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>IF2_PROAC (Q6A7M5) Translation initiation factor IF-2|
          Length = 964

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
 Frame = +2

Query: 5   SSKEEADDVELTRRPEPTLSESFPLLELEGPRPTTFTNHKAASPSPGSTTRNHGGGS-GE 181
           SS++E    +   +P P   ++ P      P+P      K  SP PG+      GGS G 
Sbjct: 134 SSQQEPPAAKPESKPTPKPGQNVPKPHAPAPKPKPGAPSK--SPKPGARPGPRPGGSAGL 191

Query: 182 CSDRSLETSPGEARRSG 232
            S       PG  RR+G
Sbjct: 192 PSAARPGPRPGAGRRTG 208

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>TOB2_MOUSE (Q9JM55) Tob2 protein (Transducer of erbB-2 2)|
          Length = 345

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = +2

Query: 20  ADDVELTRRPEPTLSES-FPLLELEGPRPTTFTNHKAASPSPGSTTRNHGGGS 175
           + D  L+  P P+  +S  P       +P TFT    A+   GST    GGG+
Sbjct: 145 SQDSSLSSSPSPSFGQSPSPTFIPRSAQPITFTTASFAATKFGSTKMKKGGGA 197

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>K1683_HUMAN (Q9H0B3) Protein KIAA1683|
          Length = 1180

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = -3

Query: 298 VSSRVSDLMSPRTPLNRLYSSPARAPSFSRTGFKAPVAALTRAA 167
           VS+R +   +P TPL+R Y      PS ++T  + PV A T  A
Sbjct: 284 VSARTNKARAPETPLSRRYDQAVTRPSRAQT--QGPVKAETPKA 325

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>CUTL1_CANFA (P39881) Homeobox protein cut-like 1 (CCAAT displacement protein)|
           (CDP) (Homeobox protein Clox) (Clox-1) (Fragment)
          Length = 975

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 15/50 (30%), Positives = 20/50 (40%)
 Frame = +2

Query: 89  EGPRPTTFTNHKAASPSPGSTTRNHGGGSGECSDRSLETSPGEARRSGRR 238
           E PRP    + +   P PG   R  GG +          + G +RR G R
Sbjct: 819 EAPRPAEKRSRRPRGPGPGPGRRGGGGPAPGAPAAPAAAARGPSRRPGAR 868

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>COIA1_HUMAN (P39060) Collagen alpha-1(XVIII) chain precursor [Contains:|
            Endostatin]
          Length = 1516

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 22/74 (29%), Positives = 26/74 (35%), Gaps = 4/74 (5%)
 Frame = -1

Query: 372  HSSTPYPEHQDPHPLTS*EETLPWQ*VHG*AT*CRHARP*TACTHRLPERRASPGLVSRL 193
            H S PYP  + PHP        PW+           A    A   RLPE +  PG     
Sbjct: 1275 HDSNPYPRREHPHPTAR-----PWR-----------ADDILASPPRLPEPQPYPGAPHHS 1318

Query: 192  LSLH----SPEPPP 163
              +H     P  PP
Sbjct: 1319 SYVHLRPARPTSPP 1332

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>SLAP1_CLOTM (Q06852) Cell surface glycoprotein 1 precursor (Outer layer protein|
            B) (S-layer protein 1)
          Length = 1664

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 25/70 (35%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
 Frame = +2

Query: 8    SKEEADDVELTRRPEPTLS-ESFPLLELEGPRPTTF-TNHKAASPSPGSTTRNHGGGSGE 181
            S E     E T   EPT S E  P    E P PTT  T   + +P+ GS      GG G 
Sbjct: 1349 SDEPTPSDEPTPSDEPTPSDEPTPSETPEEPTPTTTPTPTPSTTPTSGSGGSGGSGGGGG 1408

Query: 182  CSDRSLETSP 211
                ++ TSP
Sbjct: 1409 GGGGTVPTSP 1418

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>IF2_STRCO (Q8CJQ8) Translation initiation factor IF-2|
          Length = 1033

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +2

Query: 92  GPRPTTFTNHKAASPSPGSTTRNHGGGSGECSDRSLETSPG 214
           GPRP     ++   PSPGS  R  GGG+G         +PG
Sbjct: 267 GPRPQAPGGNR---PSPGSMPRPQGGGAGPRPGGGPRPNPG 304

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>VE2_COPV (Q89420) Regulatory protein E2|
          Length = 385

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 18/47 (38%), Positives = 21/47 (44%)
 Frame = +2

Query: 98  RPTTFTNHKAASPSPGSTTRNHGGGSGECSDRSLETSPGEARRSGRR 238
           +PTT     AA  S      +   GSG C   SL    G +RR GRR
Sbjct: 190 QPTTIPTTSAAGTSGPELPGHSASGSGAC---SLTPRKGPSRRPGRR 233

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>RUSC2_HUMAN (Q8N2Y8) RUN and SH3 domain-containing protein 2|
          Length = 1516

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
 Frame = -1

Query: 252 TACTHRLPERRASPGLVSRLLSLHSPEP-PPWLRVVLPGDGDAAL--*FVKVVGRGP 91
           T C+H LP     PG     + L  P+P PPW   V  G   + +    ++  G+GP
Sbjct: 591 TCCSHSLPPMPLGPG-----MDLLGPDPSPPWSTQVCQGPHSSEMPPAGLRATGQGP 642

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>RLF_HUMAN (Q13129) Zinc finger protein Rlf (Rearranged L-myc fusion gene|
            protein) (Zn-15-related protein)
          Length = 1914

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -2

Query: 203  FQGSCRCTHQSRLHGCEWCYLEMEMPPCDL 114
            ++G+ +C H S+    E C +    PPC +
Sbjct: 1668 YRGTLKCNHSSKTTSLEQCNIVQPPPPCKI 1697

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>DLDH_BUCAP (Q8K9T7) Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (E3 component of|
           pyruvate and 2-oxoglutarate dehydrogenases complexes)
           (Dihydrolipoamide dehydrogenase)
          Length = 476

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +2

Query: 17  EADDVELTRRPEPTLSESFPL 79
           +A+D+ LT  P PTLSES  L
Sbjct: 435 DAEDISLTIHPHPTLSESISL 455

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>TBX2_HUMAN (Q13207) T-box transcription factor TBX2 (T-box protein 2)|
          Length = 702

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 26/83 (31%), Positives = 31/83 (37%)
 Frame = +2

Query: 14  EEADDVELTRRPEPTLSESFPLLELEGPRPTTFTNHKAASPSPGSTTRNHGGGSGECSDR 193
           EE     L R P P  +    L E E  R       +  SP  G       GG G    R
Sbjct: 359 EERAGAPLGRSPAPDSASPTRLTEPERAR-------ERRSPERGKEPAE-SGGDGPFGLR 410

Query: 194 SLETSPGEARRSGRR*VQAVQGR 262
           SLE    EARR      +A +G+
Sbjct: 411 SLEKERAEARRKDEGRKEAAEGK 433

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>IAA1_ORYSA (Q5VRD1) Auxin-responsive protein IAA1 (Indoleacetic acid-induced|
           protein 1)
          Length = 199

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 289 VNSLPWKRFFSRCQRMRIL 345
           V  +PWK F   CQR+R++
Sbjct: 167 VGDVPWKMFVETCQRLRLM 185

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>WC1_NEUCR (Q01371) White collar 1 protein (WC1)|
          Length = 1167

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +2

Query: 14  EEADDVELTRRPEPTLSESFPLLELEGPRPTTFTNHKAASPSPGSTTRNHGGGS 175
           ++A     T    P+LS +   + +  P P + TN  A +P+P ++T + GG S
Sbjct: 303 QDAASTPATTFQSPSLSATTQTIRIGPPPPPSVTN--APTPAPFTSTPSGGGAS 354

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>RP1_HUMAN (P56715) Oxygen-regulated protein 1 (Retinitis pigmentosa RP1|
           protein) (Retinitis pigmentosa 1 protein)
          Length = 2156

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 25/84 (29%), Positives = 31/84 (36%)
 Frame = -1

Query: 390 RRAPAPHSSTPYPEHQDPHPLTS*EETLPWQ*VHG*AT*CRHARP*TACTHRLPERRASP 211
           R+ P P         +  H +T  EE        G +  C H R           RR  P
Sbjct: 72  RKVPLPFGVRNISTPRGRHSITRLEEL-----EDGESYLCSHGRKVQPVDLDKARRRPRP 126

Query: 210 GLVSRLLSLHSPEPPPWLRVVLPG 139
            L SR +S HSP  P  + V  PG
Sbjct: 127 WLSSRAISAHSPPHP--VAVAAPG 148

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>IAA26_ORYSA (Q652A1) Auxin-responsive protein IAA26 (Indoleacetic acid-induced|
           protein 26)
          Length = 140

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 289 VNSLPWKRFFSRCQRMRIL 345
           V  +PW+ F S C+RMR++
Sbjct: 110 VGDVPWEMFVSSCKRMRVM 128

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>TERF2_CHICK (Q9PU53) Telomeric repeat-binding factor 2 (TTAGGG repeat-binding|
           factor 2) (Telomeric DNA-binding protein)
          Length = 718

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
 Frame = +2

Query: 32  ELTRRPEPTLSESFPLLELEGPRPTTFTNHKAASPSPGSTTRNHGGGSGECSDRSLET-- 205
           ++ R P P  S   P+     P         A +PSP  TT+N   G+ EC+D    T  
Sbjct: 345 DVVRAPSPAESTKDPV---GTPGHAETARDVARAPSPAETTKNL-PGAPECADTVKNTVR 400

Query: 206 --SPGEARR 226
             SP E R+
Sbjct: 401 APSPAERRK 409

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>IAA15_ORYSA (Q6AT10) Auxin-responsive protein IAA15 (Indoleacetic acid-induced|
           protein 15)
          Length = 212

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 289 VNSLPWKRFFSRCQRMRIL 345
           V  +PWK F   CQR+R++
Sbjct: 181 VGDVPWKMFVETCQRLRLM 199

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>POLN_RUBVT (P13889) Nonstructural polyprotein [Contains: Protease (EC|
           3.4.22.-) (p150); RNA-directed RNA polymerase/helicase
           (EC 2.7.7.48) (EC 3.6.1.-) (p90)]
          Length = 2115

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 27/82 (32%), Positives = 31/82 (37%), Gaps = 10/82 (12%)
 Frame = -1

Query: 306 PWQ*VHG*AT*CRH-------ARP*TACTHRLPERRASPGLVSRLLSLHSPEPPPWLRVV 148
           PW      A  CR        AR  TA     P  R  P     +L  H     PWL + 
Sbjct: 522 PWLFAERRALRCREWDFEALRARADTAAAPAPPAPR--PARYPTVLYRHPAHHGPWLTLD 579

Query: 147 LPGDGDAAL*FVKVVG---RGP 91
            PG+ DAAL     +G   RGP
Sbjct: 580 EPGEADAALVLCDPLGQPLRGP 601

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>DMWD_HUMAN (Q09019) Dystrophia myotonica WD repeat-containing protein|
           (Dystrophia myotonica-containing WD repeat motif
           protein) (DMR-N9 protein) (Protein 59) (Fragment)
          Length = 553

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 26/108 (24%), Positives = 39/108 (36%), Gaps = 9/108 (8%)
 Frame = +2

Query: 47  PEPTLSESFPLLELEGPRPTTFTNHKAASPSPGSTTRN--------HGGGSGECSDRSLE 202
           P P L+ +  L    G  P   ++ +   P PG   R+        H  G G+     + 
Sbjct: 331 PHPPLARTRTLPGTPGTTPPAASSSRGGEPGPGPLPRSLSRSNSLPHPAGGGKAGGPGVA 390

Query: 203 TSPGEARRSGRR*VQAVQGRAWR-HQVAYP*THCHGSVSSQDVRG*GS 343
             PG     GR     +Q R  R  +  +   H  G++S     G GS
Sbjct: 391 AEPGTPFSIGRFATLTLQERRDRGAEKEHKRYHSLGNISRGGSGGSGS 438

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>NIFX_RHISN (P55675) Protein nifX|
          Length = 160

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -1

Query: 237 RLPERRASPGLVSRLLSLHSPEPPPWLRVVLPGDGDA 127
           R+ E  A   ++SR   +    PPPWLR VL   G A
Sbjct: 115 RVGEPEAIQDVLSRTQKMLKTAPPPWLRKVLAQAGVA 151

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>SP96_DICDI (P14328) Spore coat protein SP96|
          Length = 600

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +2

Query: 95  PRPTTFTNHKAASPSPGSTTRNHGGGSGECSDRSLETSPGEARRS 229
           PRPTT T   + S + GST+ +   GS   S  +  +S   +  S
Sbjct: 417 PRPTTTTGSTSDSSALGSTSESSASGSSAVSSSASGSSAASSSPS 461

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>RXRB_RAT (P49743) Retinoic acid receptor RXR-beta (Retinoid X receptor beta)|
           (Nuclear receptor coregulator 1) (Fragment)
          Length = 458

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 7/55 (12%)
 Frame = +2

Query: 47  PEPTLSESFPLLE-------LEGPRPTTFTNHKAASPSPGSTTRNHGGGSGECSD 190
           P P L   FP++        L  P P  F+    +SP   ST    GGGSG   D
Sbjct: 50  PPPPLGSPFPVISSSMGSPGLPPPAPPGFSG-PVSSPQINSTVSLPGGGSGPPED 103

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>ATRN_HUMAN (O75882) Attractin precursor (Mahogany homolog) (DPPT-L)|
          Length = 1429

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 26/71 (36%), Positives = 33/71 (46%)
 Frame = -1

Query: 270 RHARP*TACTHRLPERRASPGLVSRLLSLHSPEPPPWLRVVLPGDGDAAL*FVKVVGRGP 91
           R  RP      RLP R  SP L  RLL L     PP L ++LP + +AA     V G   
Sbjct: 37  RAGRPGLGAGLRLP-RLLSPPLRPRLLLLLLLLSPPLLLLLLPCEAEAAAAAAAVSG--- 92

Query: 90  SNSNNGKDSDK 58
           S +   K+ D+
Sbjct: 93  SAAAEAKECDR 103

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>TSH_DROME (P22265) Protein teashirt|
          Length = 954

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +2

Query: 95  PRPTTFTNHKAASPSPGSTTRNHGGGSG 178
           PR T   N     PS  S +  HGGG+G
Sbjct: 25  PRSTESANSSERCPSHDSNSSEHGGGAG 52

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>RXRB_HUMAN (P28702) Retinoic acid receptor RXR-beta (Retinoid X receptor beta)|
          Length = 533

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 7/55 (12%)
 Frame = +2

Query: 47  PEPTLSESFPLLE-------LEGPRPTTFTNHKAASPSPGSTTRNHGGGSGECSD 190
           P P L   FP++        L  P P  F+    +SP   ST    GGGSG   D
Sbjct: 125 PPPPLGSPFPVISSSMGSPGLPPPAPPGFSG-PVSSPQINSTVSLPGGGSGPPED 178

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>RXRB_CANFA (Q5TJF7) Retinoic acid receptor RXR-beta (Retinoid X receptor beta)|
          Length = 533

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 7/55 (12%)
 Frame = +2

Query: 47  PEPTLSESFPLLE-------LEGPRPTTFTNHKAASPSPGSTTRNHGGGSGECSD 190
           P P L   FP++        L  P P  F+    +SP   ST    GGGSG   D
Sbjct: 125 PPPQLGSPFPVISSSMGSPGLPPPAPPGFSG-PVSSPQINSTVSLPGGGSGPPED 178

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>GOGA4_MOUSE (Q91VW5) Golgin subfamily A member 4 (tGolgin-1)|
          Length = 2238

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 16/58 (27%), Positives = 27/58 (46%)
 Frame = +3

Query: 123 RRHLHLQVAPLATMEAALVSAATGALKPVLEKLGALAGDEYKRFKGVRGDIRSLTREL 296
           RRH   +V  ++  +   V  A  ALK  L +LGAL  +  +  +  +  ++ L   L
Sbjct: 749 RRHHQREVGSISEQQELTVRRAEKALKDELSRLGALLDERDEHLRERQARVQDLEAHL 806

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>HXA11_HUMAN (P31270) Homeobox protein Hox-A11 (Hox-1I)|
          Length = 313

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
 Frame = +2

Query: 47  PEPTLSESFP--LLELEGPRPTTFTNHKAASPSPGS--TTRNHGGGSGECSDRSLETSPG 214
           PE   S  +P      +GP   T T+  AA+ + G+  T+ +  GG G C + +      
Sbjct: 151 PENLASSDYPGDKSAEKGPPAATATSAAAAAAATGAPATSSSDSGGGGGCRETAAAAEEK 210

Query: 215 EARR 226
           E RR
Sbjct: 211 ERRR 214

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>EXTN_TOBAC (P13983) Extensin precursor (Cell wall hydroxyproline-rich|
           glycoprotein)
          Length = 620

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 14/25 (56%), Positives = 14/25 (56%)
 Frame = -1

Query: 402 PPCHRRAPAPHSSTPYPEHQDPHPL 328
           PP HR AP  H   P P HQ P PL
Sbjct: 227 PPTHRHAPPTHRHAP-PTHQ-PSPL 249



 Score = 27.3 bits (59), Expect = 8.8
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -1

Query: 411 RWSPPCHRRAPAPHSSTPYPEHQDPHP 331
           R +PP HR AP  H  +P   H  P P
Sbjct: 231 RHAPPTHRHAPPTHQPSPL-RHLPPSP 256

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>UVRA_LEPIN (Q8F435) UvrABC system protein A (UvrA protein) (Excinuclease ABC|
           subunit A)
          Length = 948

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 21/67 (31%), Positives = 32/67 (47%)
 Frame = +3

Query: 114 QITRRHLHLQVAPLATMEAALVSAATGALKPVLEKLGALAGDEYKRFKGVRGDIRSLTRE 293
           QIT R L         + A ++S   G  K VLEK   +  D + R + + G+IR+L  E
Sbjct: 134 QITARVLAFPQGSKLQILAPVISGKKGEHKDVLEK---IRKDGFNRVR-INGEIRTLEEE 189

Query: 294 LTAMEAF 314
           +   + F
Sbjct: 190 IVLKKNF 196

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>UVRA_LEPIC (Q72RM8) UvrABC system protein A (UvrA protein) (Excinuclease ABC|
           subunit A)
          Length = 948

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 21/67 (31%), Positives = 32/67 (47%)
 Frame = +3

Query: 114 QITRRHLHLQVAPLATMEAALVSAATGALKPVLEKLGALAGDEYKRFKGVRGDIRSLTRE 293
           QIT R L         + A ++S   G  K VLEK   +  D + R + + G+IR+L  E
Sbjct: 134 QITARVLAFPQGSKLQILAPVISGKKGEHKDVLEK---IRKDGFNRVR-INGEIRTLEEE 189

Query: 294 LTAMEAF 314
           +   + F
Sbjct: 190 IVLKKNF 196

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>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1|
          Length = 888

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 24/80 (30%), Positives = 29/80 (36%), Gaps = 1/80 (1%)
 Frame = -1

Query: 405 SPPCHRRAPAPHS-STPYPEHQDPHPLTS*EETLPWQ*VHG*AT*CRHARP*TACTHRLP 229
           SPP  RR+P+P   S P      P P                       +  TA     P
Sbjct: 576 SPPPRRRSPSPRRYSPPIQRRYSPSP---------------------PPKRRTASPPPPP 614

Query: 228 ERRASPGLVSRLLSLHSPEP 169
           +RRASP   S+    HSP P
Sbjct: 615 KRRASPSPQSKRRVSHSPPP 634

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>GAG_MLVF5 (P26807) Gag polyprotein (Core polyprotein) [Contains: Matrix|
           protein p15; RNA-binding phosphoprotein p12; Capsid
           protein p30; Nucleocapsid protein p10]
          Length = 538

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 18/65 (27%), Positives = 30/65 (46%)
 Frame = +2

Query: 44  RPEPTLSESFPLLELEGPRPTTFTNHKAASPSPGSTTRNHGGGSGECSDRSLETSPGEAR 223
           RP+       PL++L    P  + +     P P S+  N G G    ++ + ++SP  +R
Sbjct: 143 RPQVLPDSGGPLIDLLTEDPPPYRD-----PGPSSSDGNGGSGEVAPTEGAPDSSPMVSR 197

Query: 224 RSGRR 238
             GRR
Sbjct: 198 LRGRR 202

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>CH601_VIBCH (Q9KNR7) 60 kDa chaperonin 1 (Protein Cpn60 1) (groEL protein 1)|
          Length = 544

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 21/76 (27%), Positives = 36/76 (47%)
 Frame = +3

Query: 147 APLATMEAALVSAATGALKPVLEKLGALAGDEYKRFKGVRGDIRSLTRELTAMEAFLLKM 326
           A  A +E  +V+    AL     KL +L GD  ++  G+R  +R++   L      ++K 
Sbjct: 402 ATRAAVEEGVVAGGGVALIRAASKLSSLVGDNEEQNVGIRVALRAMEAPLRQ----IVKN 457

Query: 327 SEDEDPDVQDKVWMNE 374
           + DE+  V + V   E
Sbjct: 458 AGDEESVVANNVRAGE 473

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>RXRB_MOUSE (P28704) Retinoic acid receptor RXR-beta (Retinoid X receptor beta)|
           (MHC class I regulatory element-binding protein
           H-2RIIBP)
          Length = 520

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 7/55 (12%)
 Frame = +2

Query: 47  PEPTLSESFPLLE-------LEGPRPTTFTNHKAASPSPGSTTRNHGGGSGECSD 190
           P P L   FP++        L  P P  F+    +SP   ST    GGGSG   D
Sbjct: 112 PPPPLGSPFPVISSSMGSPGLPPPAPPGFSG-PVSSPQINSTVSLPGGGSGPPED 165

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>PHYB_SORBI (P93527) Phytochrome B|
          Length = 1178

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 18/45 (40%), Positives = 21/45 (46%)
 Frame = +2

Query: 44  RPEPTLSESFPLLELEGPRPTTFTNHKAASPSPGSTTRNHGGGSG 178
           R  PT S S      E PR     +H  +  S GST+R  GGG G
Sbjct: 6   RATPTRSPSSA--RPEAPRHAHHHHHHHSQSSGGSTSRAGGGGGG 48

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>YEY8_YEAST (P40095) Hypothetical 63.7 kDa protein in BEM2-NCB1 intergenic|
           region
          Length = 573

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 20/57 (35%), Positives = 27/57 (47%)
 Frame = -3

Query: 310 ASMAVSSRVSDLMSPRTPLNRLYSSPARAPSFSRTGFKAPVAALTRAASMVASGATW 140
           +S A SS  S  +  R P+  + SSP  APS   +  K  V +L R A  +    TW
Sbjct: 446 SSPAPSSSSSSSLVSRGPMQSISSSPTPAPSSGSSKSKNAVKSL-RFADEIYVNDTW 501

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>BSN_MOUSE (O88737) Bassoon protein|
          Length = 3941

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 8/74 (10%)
 Frame = +2

Query: 2   KSSKEEADDVELTRRPEPTLSESFPLLELEGPRPTTFTNHKAASPSP--------GSTTR 157
           +S   +A+    T  P PT + + P +    P+P   T    A P P         +TT 
Sbjct: 270 QSGPRQAEAARATSVPGPTQATAPPEVGRVSPQPPLSTKPSTAEPRPPAGEAQGKSATTV 329

Query: 158 NHGGGSGECSDRSL 199
             G G+GE +   L
Sbjct: 330 PSGLGAGEQTQEGL 343

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>LAMBV_CHICK (Q01636) Laminin beta-1 chain variant (Laminin beta-1-2 chain)|
           (Fragment)
          Length = 198

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 17/40 (42%), Positives = 18/40 (45%)
 Frame = -1

Query: 282 AT*CRHARP*TACTHRLPERRASPGLVSRLLSLHSPEPPP 163
           AT   HARP     H  PE RA P    R     +P PPP
Sbjct: 17  ATPPTHARPDPTRRHPDPESRAPPHARPRSPPPPAPSPPP 56

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>IAA4_ARATH (P33077) Auxin-responsive protein IAA4 (Indoleacetic acid-induced|
           protein 4) (Auxin-induced protein AUX2-11)
          Length = 186

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 289 VNSLPWKRFFSRCQRMRIL 345
           V  +PW+ F S C+R+RI+
Sbjct: 155 VGDVPWEMFVSSCKRLRIM 173

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>ISPE_SYNJB (Q2JLP6) 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC|
           2.7.1.148) (CMK)
           (4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol
           kinase)
          Length = 311

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 17/36 (47%), Positives = 20/36 (55%)
 Frame = -2

Query: 317 KKRFHGSEFTGKRPDVATHALEPLVLIACQSAELLQ 210
           K R HG   T  RP+V T A      +A Q+AELLQ
Sbjct: 45  KSRPHGIHLTCDRPEVPTDARN----LAYQAAELLQ 76

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>SC23A_MOUSE (Q01405) Protein transport protein Sec23A (SEC23-related protein A)|
          Length = 765

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 13/54 (24%), Positives = 25/54 (46%)
 Frame = -2

Query: 284 KRPDVATHALEPLVLIACQSAELLQDWFQGSCRCTHQSRLHGCEWCYLEMEMPP 123
           +RPD+     EP++        +L       C+  ++++L  C +CY   + PP
Sbjct: 47  ERPDLPPIQYEPVLCSRTTCRAVLNPL----CQVDYRAKLWACNFCYQRNQFPP 96

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>SC23A_HUMAN (Q15436) Protein transport protein Sec23A (SEC23-related protein A)|
          Length = 765

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 13/54 (24%), Positives = 25/54 (46%)
 Frame = -2

Query: 284 KRPDVATHALEPLVLIACQSAELLQDWFQGSCRCTHQSRLHGCEWCYLEMEMPP 123
           +RPD+     EP++        +L       C+  ++++L  C +CY   + PP
Sbjct: 47  ERPDLPPIQYEPVLCSRTTCRAVLNPL----CQVDYRAKLWACNFCYQRNQFPP 96

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>IAA6_ORYSA (Q8LQ74) Auxin-responsive protein IAA6 (Indoleacetic acid-induced|
           protein 6)
          Length = 335

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = +1

Query: 229 WQAMSTSGSRACV---ATSGRLPVNSLPWKRFFSRCQRMRIL 345
           +Q +  SG    V   +   R+ V  +PWK F S  +R+R+L
Sbjct: 278 YQLLDGSGEYTLVYEDSEGDRMLVGDVPWKVFVSTAKRLRVL 319

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>ATG23_KLULA (Q6CWA7) Autophagy-related protein 23|
          Length = 426

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 19/75 (25%), Positives = 39/75 (52%)
 Frame = +3

Query: 123 RRHLHLQVAPLATMEAALVSAATGALKPVLEKLGALAGDEYKRFKGVRGDIRSLTRELTA 302
           R+ + + +  L T+ + ++    G +K  L KL     ++Y++      ++RSL  E  A
Sbjct: 42  RKDILICLNDLKTVNSLIIDPRDGLIKKNLHKL-----EKYEQ------ELRSLESEEAA 90

Query: 303 MEAFLLKMSEDEDPD 347
           +E+ L +   D+DP+
Sbjct: 91  IESNLNQWKIDQDPE 105

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>NOL10_BRARE (Q802W4) Nucleolar protein 10|
          Length = 722

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 327 SEDEDPDVQDKVWMNEVRE 383
           SED+  D  DK W+ EVRE
Sbjct: 541 SEDDSSDEDDKGWVQEVRE 559

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>FLID_TREPA (O83842) Flagellar hook-associated protein 2 (HAP2) (Filament cap|
           protein) (Flagellar cap protein)
          Length = 722

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
 Frame = +2

Query: 11  KEEADDVELTRRPEPTLSESFPLLELEGPRPTTFTNHKAASPSPGSTTRNHGGGSGECSD 190
           K EA   +L   P     E +P ++ +G  P      +A   S G+ T     GSG  +D
Sbjct: 311 KNEASQGDL---PTTDGLEKYPAVDDKGDNP------RAPGESQGTATHE---GSGSSTD 358

Query: 191 RSLET-SPGEARRSGRR*VQAVQGRA 265
            + +T S G    SG+  ++++QG A
Sbjct: 359 NADDTRSTGALAGSGKLALESLQGHA 384

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>TBX2_MOUSE (Q60707) T-box transcription factor TBX2 (T-box protein 2)|
          Length = 701

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 16/32 (50%), Positives = 16/32 (50%)
 Frame = +2

Query: 131 SPSPGSTTRNHGGGSGECSDRSLETSPGEARR 226
           SP   S     GGG G  S RSLE    EARR
Sbjct: 390 SPERCSKEPTEGGGDGPFSLRSLEKERPEARR 421

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>PTR1_LEIMA (Q01782) Pteridine reductase 1 (EC 1.5.1.33) (H region methotrexate|
           resistance protein)
          Length = 288

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
 Frame = -3

Query: 322 LRRNASMAVSSRVSDLMSPRTPLNRL-----YSSPARAPSFSRTGFKAPVAALTRAASMV 158
           L  + S A ++ +S  ++ R P + +      S+ A AP     G  APV   TR A +V
Sbjct: 35  LHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADG-SAPVTLFTRCAELV 93

Query: 157 ASGATWRWRCRLVI 116
           A+  T   RC +++
Sbjct: 94  AACYTHWGRCDVLV 107

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>JAD1C_MOUSE (P41230) Jumonji/ARID domain-containing protein 1C (SmcX protein)|
            (Xe169 protein)
          Length = 1554

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 15/49 (30%), Positives = 20/49 (40%)
 Frame = -2

Query: 239  IACQSAELLQDWFQGSCRCTHQSRLHGCEWCYLEMEMPPCDL*RWWDED 93
            +     +L QDWF G  RC    RL   +       +P   L  WW+ D
Sbjct: 1197 VGALQCDLCQDWFHG--RCVTVPRLLSSQ----RSSLPSSPLLAWWEWD 1239

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>YCYL_CAEEL (Q22523) Hypothetical zinc metalloproteinase T16A9.4 (EC 3.4.24.-)|
          Length = 769

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
 Frame = +3

Query: 165 EAALVSAATGALKPVLEKLGA---LAGDEYKRFKGVRGDIRSLTRELTAMEAFLLKMSED 335
           E  L S    A++ + +++G    L GD+++ +     +  +L   LT + A +L+M+  
Sbjct: 176 EEELESTGVEAMRDIAKRIGGWPTLEGDKWQEWSHSWEEQIALVLNLTGVNAVILEMAVT 235

Query: 336 EDP 344
            DP
Sbjct: 236 HDP 238

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>RGA7_SCHPO (O94466) Probable Rho-GTPase-activating protein 7|
          Length = 695

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
 Frame = +2

Query: 80  LELEGPRPTTFTNHKAASPS-PGSTTRNHGGGSGECSDRSLETSPGEA 220
           L+   P P+TF N   ASP+ P S+T N        S  +    P  A
Sbjct: 367 LQNTNPAPSTFPNPSVASPAFPNSSTSNPSTAPASASPLASTLKPSTA 414

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>COQ5_PONPY (Q5RBK6) Ubiquinone biosynthesis methyltransferase COQ5,|
           mitochondrial precursor (EC 2.1.1.-)
          Length = 327

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +2

Query: 134 PSPGSTTRNHGGGSGECSDRSLETSPGEARRSGRR*VQAVQGRAW 268
           P PG+   +  GG+G+ + R L     + +R  +R ++A Q  +W
Sbjct: 104 PLPGTQLLDVAGGTGDIAFRFLNYVQSQHQRKQKRQLRAQQNLSW 148

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>COQ5_HUMAN (Q5HYK3) Ubiquinone biosynthesis methyltransferase COQ5,|
           mitochondrial precursor (EC 2.1.1.-)
          Length = 327

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +2

Query: 134 PSPGSTTRNHGGGSGECSDRSLETSPGEARRSGRR*VQAVQGRAW 268
           P PG+   +  GG+G+ + R L     + +R  +R ++A Q  +W
Sbjct: 104 PLPGTQLLDVAGGTGDIAFRFLNYVQSQHQRKQKRQLRAQQNLSW 148

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>PRG4_HUMAN (Q92954) Proteoglycan-4 precursor (Lubricin) (Megakaryocyte|
            stimulating factor) (Superficial zone proteoglycan)
            [Contains: Proteoglycan-4 C-terminal part]
          Length = 1404

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 19/59 (32%), Positives = 26/59 (44%)
 Frame = +2

Query: 41   RRPEPTLSESFPLLELEGPRPTTFTNHKAASPSPGSTTRNHGGGSGECSDRSLETSPGE 217
            ++P PT  E+ P    E   PTT         SP  +T      S E + ++LE SP E
Sbjct: 840  KKPAPTTPETPPPTTSEVSTPTTTKEPTTIHKSPDESTPEL---SAEPTPKALENSPKE 895

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>IE68_PRVKA (P24827) Immediate-early protein RSP40|
          Length = 364

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 23/75 (30%), Positives = 27/75 (36%), Gaps = 1/75 (1%)
 Frame = +2

Query: 50  EPTLSESFPLLELEGPRPTT-FTNHKAASPSPGSTTRNHGGGSGECSDRSLETSPGEARR 226
           EP  S  F  ++  GPRPTT        SP+   T    G    E  +      P E R 
Sbjct: 10  EPVPSPPFSPVDPPGPRPTTPVPGSSPPSPASTPTPPKRGRYVVEHPEYGPPPDPEEVRV 69

Query: 227 SGRR*VQAVQGRAWR 271
            G R   A     WR
Sbjct: 70  HGARGPGAFCAAPWR 84

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>GPNMB_RAT (Q6P7C7) Transmembrane glycoprotein NMB precursor|
          Length = 572

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
 Frame = +3

Query: 147 APLATMEAALVSAATGALKPVLEKLGALAGDEYKRFKGVRGDIRSLTRE------LTAME 308
           +PL T+   L+S   G L   +  +  L   ++K +K +    R++ +       L+  +
Sbjct: 494 SPLRTVNGVLISI--GCLAMFVTMVTILLYKKHKTYKPIGNCTRNVVKGKGLSVFLSHAK 551

Query: 309 AFLLKMSEDEDPDVQDKVWM 368
           A   +   ++DP +QDK WM
Sbjct: 552 APFSRGDREKDPLLQDKPWM 571


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,130,449
Number of Sequences: 219361
Number of extensions: 1504378
Number of successful extensions: 6365
Number of sequences better than 10.0: 81
Number of HSP's better than 10.0 without gapping: 5763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6333
length of database: 80,573,946
effective HSP length: 112
effective length of database: 56,005,514
effective search space used: 1344132336
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result