ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl18f01 |
|---|---|
| Clone Library Name | barley_pub |
>DLGP2_HUMAN (Q9P1A6) Disks large-associated protein 2 (DAP-2)| (SAP90/PSD-95-associated protein 2) (SAPAP2) (PSD-95/SAP90-binding protein 2) (Fragment) Length = 1019 Score = 32.3 bits (72), Expect = 0.28 Identities = 14/28 (50%), Positives = 19/28 (67%) Frame = +2 Query: 5 KPPPPLYPRAAASP*LSVTADASTPNPQ 88 K PPP+ PR + P +SVTA +ST + Q Sbjct: 576 KTPPPVPPRTTSKPLISVTAQSSTESTQ 603
>DLGP2_RAT (P97837) Disks large-associated protein 2 (DAP-2)| (SAP90/PSD-95-associated protein 2) (SAPAP2) (PSD-95/SAP90-binding protein 2) Length = 1059 Score = 32.3 bits (72), Expect = 0.28 Identities = 14/28 (50%), Positives = 19/28 (67%) Frame = +2 Query: 5 KPPPPLYPRAAASP*LSVTADASTPNPQ 88 K PPP+ PR + P +SVTA +ST + Q Sbjct: 615 KTPPPVPPRTTSKPLISVTAQSSTESTQ 642
>DLGP2_MOUSE (Q8BJ42) Disks large-associated protein 2 (DAP-2)| (SAP90/PSD-95-associated protein 2) (SAPAP2) (PSD-95/SAP90-binding protein 2) Length = 1059 Score = 32.3 bits (72), Expect = 0.28 Identities = 14/28 (50%), Positives = 19/28 (67%) Frame = +2 Query: 5 KPPPPLYPRAAASP*LSVTADASTPNPQ 88 K PPP+ PR + P +SVTA +ST + Q Sbjct: 615 KTPPPVPPRTTSKPLISVTAQSSTESTQ 642
>DLGP1_HUMAN (O14490) Disks large-associated protein 1 (DAP-1) (Guanylate| kinase-associated protein) (hGKAP) (SAP90/PSD-95-associated protein 1) (SAPAP1) (PSD-95/SAP90-binding protein 1) Length = 977 Score = 31.6 bits (70), Expect = 0.48 Identities = 13/28 (46%), Positives = 18/28 (64%) Frame = +2 Query: 5 KPPPPLYPRAAASP*LSVTADASTPNPQ 88 K PPP+ PR P +S+TA +ST + Q Sbjct: 540 KTPPPVPPRTTTKPFISITAQSSTESAQ 567
>DLGP1_RAT (P97836) Disks large-associated protein 1 (DAP-1) (Guanylate| kinase-associated protein) (rGKAP) (SAP90/PSD-95-associated protein 1) (SAPAP1) (PSD-95/SAP90-binding protein 1) Length = 992 Score = 31.6 bits (70), Expect = 0.48 Identities = 13/28 (46%), Positives = 18/28 (64%) Frame = +2 Query: 5 KPPPPLYPRAAASP*LSVTADASTPNPQ 88 K PPP+ PR P +S+TA +ST + Q Sbjct: 556 KTPPPVPPRTTTKPFISITAQSSTESAQ 583
>DLGP1_MOUSE (Q9D415) Disks large-associated protein 1 (DAP-1) (Guanylate| kinase-associated protein) (SAP90/PSD-95-associated protein 1) (SAPAP1) (PSD-95/SAP90-binding protein 1) Length = 992 Score = 31.6 bits (70), Expect = 0.48 Identities = 13/28 (46%), Positives = 18/28 (64%) Frame = +2 Query: 5 KPPPPLYPRAAASP*LSVTADASTPNPQ 88 K PPP+ PR P +S+TA +ST + Q Sbjct: 556 KTPPPVPPRTTTKPFISITAQSSTESAQ 583
>DLGP4_HUMAN (Q9Y2H0) Disks large-associated protein 4 (DAP-4)| (SAP90/PSD-95-associated protein 4) (SAPAP4) (PSD-95/SAP90-binding protein 4) Length = 989 Score = 30.8 bits (68), Expect = 0.82 Identities = 13/28 (46%), Positives = 18/28 (64%) Frame = +2 Query: 5 KPPPPLYPRAAASP*LSVTADASTPNPQ 88 K PPP+ PR + P +SVT +ST + Q Sbjct: 559 KTPPPVPPRTTSKPFISVTVQSSTESAQ 586
>DLGP4_RAT (P97839) Disks large-associated protein 4 (DAP-4)| (SAP90/PSD-95-associated protein 4) (SAPAP4) (PSD-95/SAP90-binding protein 4) Length = 992 Score = 30.8 bits (68), Expect = 0.82 Identities = 13/28 (46%), Positives = 18/28 (64%) Frame = +2 Query: 5 KPPPPLYPRAAASP*LSVTADASTPNPQ 88 K PPP+ PR + P +SVT +ST + Q Sbjct: 559 KTPPPVPPRTTSKPFISVTVQSSTESAQ 586
>SUV92_MOUSE (Q9EQQ0) Histone-lysine N-methyltransferase, H3 lysine-9 specific 2| (EC 2.1.1.43) (Histone H3-K9 methyltransferase 2) (H3-K9-HMTase 2) (Suppressor of variegation 3-9 homolog 2) (Su(var)3-9 homolog 2) Length = 477 Score = 29.6 bits (65), Expect = 1.8 Identities = 17/41 (41%), Positives = 20/41 (48%) Frame = -1 Query: 200 RPTAKVGEGVRTAGRRRAWEGTAMAAAPASERRRGWPVEGW 78 RP+A G R AG +RAW G AA E RG + W Sbjct: 47 RPSA----GERRAGSQRAWSGAPRAAVFGDECARGALFKAW 83 Score = 27.7 bits (60), Expect = 7.0 Identities = 17/43 (39%), Positives = 21/43 (48%) Frame = -1 Query: 206 PQRPTAKVGEGVRTAGRRRAWEGTAMAAAPASERRRGWPVEGW 78 P RP A+ RTA RRRA TA + P++ RR W Sbjct: 24 PPRPKAR-----RTARRRRAETLTARRSRPSAGERRAGSQRAW 61
>RBCC1_HUMAN (Q8TDY2) RB1-inducible coiled-coil protein 1| Length = 1594 Score = 29.6 bits (65), Expect = 1.8 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 7/42 (16%) Frame = +1 Query: 205 GCIKEMEEVENSSKRKAPEL-------SSEDNSSAVVLHEQE 309 G IKE EE EN K+ EL ++DN A+V HE+E Sbjct: 880 GLIKETEENENKIKKLKGELVCLEEVLQNKDNEFALVKHEKE 921
>SN1L1_RAT (Q9R1U5) Serine/threonine-protein kinase SNF1-like kinase 1 (EC| 2.7.11.1) (Serine/threonine-protein kinase SNF1LK) (Salt-inducible protein kinase) (Protein kinase KID2) Length = 776 Score = 29.3 bits (64), Expect = 2.4 Identities = 16/39 (41%), Positives = 18/39 (46%) Frame = +1 Query: 247 RKAPELSSEDNSSAVVLHEQEPLPGSTAKRQNLARSCIH 363 R+ P L E QEPLPGST +R LA H Sbjct: 451 RQGPSLEEEQEV-------QEPLPGSTGRRHTLAEVSTH 482
>SN1L1_MOUSE (Q60670) Serine/threonine-protein kinase SNF1-like kinase 1 (EC| 2.7.11.1) (Serine/threonine-protein kinase SNF1LK) (HRT-20) (Myocardial SNF1-like kinase) Length = 779 Score = 29.3 bits (64), Expect = 2.4 Identities = 16/39 (41%), Positives = 18/39 (46%) Frame = +1 Query: 247 RKAPELSSEDNSSAVVLHEQEPLPGSTAKRQNLARSCIH 363 R+ P L E QEPLPGST +R LA H Sbjct: 451 RQGPSLEEEQEV-------QEPLPGSTGRRHTLAEVSTH 482
>HXB3_CHICK (P23682) Homeobox protein Hox-B3 (Chox-2.7)| Length = 399 Score = 29.3 bits (64), Expect = 2.4 Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 5/94 (5%) Frame = +1 Query: 73 NPQPSTGQPLRLSLAGAAAIAVPSQARRLP-----AVRTPSPTLAVGL*GCIKEMEEVEN 237 +P P+ P + ++ ++PS + ++P +V+TPS T + M+E Sbjct: 79 HPPPTVSPPPNPTTNSTSSNSIPSGSAKVPRVKPTSVQTPSLTKQI-----FPWMKESRQ 133 Query: 238 SSKRKAPELSSEDNSSAVVLHEQEPLPGSTAKRQ 339 +SK+K+ S+E S E+ P PGS+A ++ Sbjct: 134 NSKQKSSSPSTETCSG-----EKTP-PGSSASKR 161
>SWR1_YARLI (Q6CA87) Helicase SWR1 (EC 3.6.1.-)| Length = 1772 Score = 29.3 bits (64), Expect = 2.4 Identities = 29/107 (27%), Positives = 44/107 (41%), Gaps = 17/107 (15%) Frame = +1 Query: 82 PSTGQPLRLSLAGAAAIAVPSQARRLPAVRTP------SPTLAVGL*GCIK-------EM 222 P Q R + A +++ P +A P +TP +P+ G +K E Sbjct: 73 PGGRQQRRAAAAAKESLSTPKRAPAKPKEKTPKATPKKTPSRRNGRRRSVKVEEVEEEEP 132 Query: 223 EEVENSSKRKAPELSSEDNSSAVVLHEQEPLPGSTA----KRQNLAR 351 EE E + +APE E + V E+E P S K+Q LA+ Sbjct: 133 EEEEGPEEEEAPEEEVEGDDEEEVQVEEEAEPVSLTPLEEKKQELAK 179
>DLGP3_HUMAN (O95886) Disks large-associated protein 3 (DAP-3)| (SAP90/PSD-95-associated protein 3) (SAPAP3) (PSD-95/SAP90-binding protein 3) Length = 979 Score = 28.9 bits (63), Expect = 3.1 Identities = 12/24 (50%), Positives = 17/24 (70%) Frame = +2 Query: 5 KPPPPLYPRAAASP*LSVTADAST 76 K PPP+ P + A P +S+TA +ST Sbjct: 539 KAPPPIPPGSQAPPRISITAQSST 562
>DLGP3_RAT (P97838) Disks large-associated protein 3 (DAP-3)| (SAP90/PSD-95-associated protein 3) (SAPAP3) (PSD-95/SAP90-binding protein 3) Length = 977 Score = 28.9 bits (63), Expect = 3.1 Identities = 12/24 (50%), Positives = 17/24 (70%) Frame = +2 Query: 5 KPPPPLYPRAAASP*LSVTADAST 76 K PPP+ P + A P +S+TA +ST Sbjct: 537 KAPPPIPPGSQAPPRISITAQSST 560
>DLGP3_MOUSE (Q6PFD5) Disks large-associated protein 3 (DAP-3)| (SAP90/PSD-95-associated protein 3) (SAPAP3) (PSD-95/SAP90-binding protein 3) Length = 977 Score = 28.9 bits (63), Expect = 3.1 Identities = 12/24 (50%), Positives = 17/24 (70%) Frame = +2 Query: 5 KPPPPLYPRAAASP*LSVTADAST 76 K PPP+ P + A P +S+TA +ST Sbjct: 537 KAPPPIPPGSQAPPRISITAQSST 560
>K1043_HUMAN (Q96AY4) TPR repeat-containing protein KIAA1043| Length = 1716 Score = 28.9 bits (63), Expect = 3.1 Identities = 19/80 (23%), Positives = 39/80 (48%), Gaps = 1/80 (1%) Frame = +1 Query: 76 PQPSTGQPLRLSLAGAAAIAVPSQARRLPAVRTP-SPTLAVGL*GCIKEMEEVENSSKRK 252 PQP T +R+S++ +I+ P+ ++ + +P SP VG ++ +S + Sbjct: 1320 PQPGTAGGMRVSVSSKGSISTPNSPVKMTLIPSPNSPFQKVG---------KLASSDTGE 1370 Query: 253 APELSSEDNSSAVVLHEQEP 312 + + S+E +S+ E P Sbjct: 1371 SDQSSTETDSTVKSQEESNP 1390
>WNK4_RAT (Q7TPK6) Serine/threonine-protein kinase WNK4 (EC 2.7.11.1) (Protein| kinase with no lysine 4) (Protein kinase, lysine-deficient 4) Length = 1222 Score = 28.9 bits (63), Expect = 3.1 Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 17/96 (17%) Frame = +1 Query: 76 PQPSTGQPLRLSLAGAAAIAVPSQARRL------------PAVRTPSPTLAVGL*GCIKE 219 P PST LSLA A ++AV + A+ L PA P P++ + L C +E Sbjct: 896 PLPSTTAAPLLSLASAFSLAVMTVAQSLLSPSPGLLSQSPPAPPGPLPSMPLPLASCDQE 955 Query: 220 -----MEEVENSSKRKAPELSSEDNSSAVVLHEQEP 312 E EN + R + D A + E +P Sbjct: 956 SLSAQTAETENEASRNPAQPLLGDARLAPISEEGKP 991
>TONB_KLEPN (P45610) Protein tonB| Length = 243 Score = 28.5 bits (62), Expect = 4.1 Identities = 22/80 (27%), Positives = 30/80 (37%) Frame = +1 Query: 79 QPSTGQPLRLSLAGAAAIAVPSQARRLPAVRTPSPTLAVGL*GCIKEMEEVENSSKRKAP 258 QPS QP+ +++ PA P P V +E V P Sbjct: 38 QPSPTQPIEITMVA-------------PADLEPPPAQPV--------VEPVVEPEPEPEP 76 Query: 259 ELSSEDNSSAVVLHEQEPLP 318 E+ E AVV+H+ EP P Sbjct: 77 EVVPEPPKEAVVIHKPEPKP 96
>BRD4_MOUSE (Q9ESU6) Bromodomain-containing protein 4 (Mitotic| chromosome-associated protein) (MCAP) Length = 1400 Score = 28.5 bits (62), Expect = 4.1 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 4/42 (9%) Frame = +1 Query: 214 KEMEEVENSSKRKAPEL----SSEDNSSAVVLHEQEPLPGST 327 K+ EEVE + K K EL + ++NSS + ++EP+P T Sbjct: 553 KKKEEVEENKKSKTKELPPKKTKKNNSSNSNVSKKEPVPTKT 594
>Y7700_STRCO (Q9F1Y6) Hypothetical protein SCO7700| Length = 440 Score = 28.5 bits (62), Expect = 4.1 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = +2 Query: 146 KLVASLLSEPLPQPWPLVSEVVSKKWKRW 232 + V L P+P+P P+ E VS++ KRW Sbjct: 117 RAVPGLYHHPVPEPDPVRVEEVSRRIKRW 145
>WNK4_MOUSE (Q80UE6) Serine/threonine-protein kinase WNK4 (EC 2.7.11.1) (Protein| kinase with no lysine 4) (Protein kinase, lysine-deficient 4) Length = 1222 Score = 28.5 bits (62), Expect = 4.1 Identities = 28/94 (29%), Positives = 39/94 (41%), Gaps = 17/94 (18%) Frame = +1 Query: 82 PSTGQPLRLSLAGAAAIAVPSQARRL------------PAVRTPSPTLAVGL*GCIKE-- 219 PST LSLA A ++AV + A+ L PA P P+L + L C +E Sbjct: 898 PSTTAAPLLSLASAFSLAVMTVAQSLLSPSPGLLSQSPPAPPGPLPSLPLSLASCDQESL 957 Query: 220 ---MEEVENSSKRKAPELSSEDNSSAVVLHEQEP 312 E EN + R + D A + E +P Sbjct: 958 SAQTAETENEASRNPAQPLLGDARLAPISEEGKP 991
>IBP3_HUMAN (P17936) Insulin-like growth factor-binding protein 3 precursor| (IGFBP-3) (IBP-3) (IGF-binding protein 3) Length = 291 Score = 28.5 bits (62), Expect = 4.1 Identities = 21/75 (28%), Positives = 29/75 (38%) Frame = +1 Query: 76 PQPSTGQPLRLSLAGAAAIAVPSQARRLPAVRTPSPTLAVGL*GCIKEMEEVENSSKRKA 255 P P +PL+ L G S RL A P+P G E EE ++ ++ Sbjct: 96 PSPDEARPLQALLDGRGLCVNASAVSRLRAYLLPAPPAP----GNASESEEDRSAGSVES 151 Query: 256 PELSSEDNSSAVVLH 300 P +SS S H Sbjct: 152 PSVSSTHRVSDPKFH 166
>PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-binding protein| 1-A) (Cytoplasmic poly(A)-binding protein 1-A) (PABP-A) (PABP 1-A) (xPABP1-A) Length = 633 Score = 28.1 bits (61), Expect = 5.3 Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 4/101 (3%) Frame = +1 Query: 94 QPLRLSLAGAAAIAVPSQA---RRLPAVRTPSPTLAVGL*GCIKEMEEVENSSKRKAPE- 261 +PL S+ AA Q R P ++ PTLA + G + E++ E ++PE Sbjct: 541 EPLTASMLAAAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPES 600 Query: 262 LSSEDNSSAVVLHEQEPLPGSTAKRQNLARSCIHEVAVPTA 384 L S+ + + VL + + A+ ++ VPTA Sbjct: 601 LRSKVDEAVAVLQAHQ--------AKEAAQKVVNATGVPTA 633
>IF4G3_HUMAN (O43432) Eukaryotic translation initiation factor 4 gamma 3| (eIF-4-gamma 3) (eIF-4G 3) (eIF4G 3) (eIF-4-gamma II) (eIF4GII) Length = 1585 Score = 28.1 bits (61), Expect = 5.3 Identities = 23/75 (30%), Positives = 34/75 (45%) Frame = +1 Query: 160 PAVRTPSPTLAVGL*GCIKEMEEVENSSKRKAPELSSEDNSSAVVLHEQEPLPGSTAKRQ 339 P +++PSP L + L G KE E ++A+V + PLP S Sbjct: 226 PVLKSPSPVLRLVLSGEKKEQE-------------GQTSETTAIVSIAELPLPPSPTTVS 272 Query: 340 NLARSCIHEVAVPTA 384 ++ARS I A PT+ Sbjct: 273 SVARSTI---AAPTS 284
>GIT1_MOUSE (Q68FF6) ARF GTPase-activating protein GIT1 (G protein-coupled| receptor kinase-interactor 1) (GRK-interacting protein 1) Length = 770 Score = 27.7 bits (60), Expect = 7.0 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 3/41 (7%) Frame = +1 Query: 241 SKRKAPELSSEDNSSAVVLHE---QEPLPGSTAKRQNLARS 354 S R EL + + +V E QEPLP + A R N ARS Sbjct: 379 SARSQSELDDQHDYDSVASDEDTDQEPLPSAGATRNNRARS 419
>CBF5_SCHPO (O14007) H/ACA ribonucleoprotein complex subunit 4 (EC 5.4.99.-)| (Centromere-binding factor 5 homolog) Length = 474 Score = 27.7 bits (60), Expect = 7.0 Identities = 16/47 (34%), Positives = 23/47 (48%) Frame = +1 Query: 166 VRTPSPTLAVGL*GCIKEMEEVENSSKRKAPELSSEDNSSAVVLHEQ 306 V P+P +A E+ VE+S KRK+ E S +D A E+ Sbjct: 401 VAKPAPVVAPAAPTVEAEVNGVEDSKKRKSVESSEKDEDEAAKKEEK 447
>SMCA2_HUMAN (P51531) Probable global transcription activator SNF2L2 (EC| 3.6.1.-) (ATP-dependent helicase SMARCA2) (SNF2-alpha) (SWI/SNF-related matrix associated actin dependent regulator of chromatin subfamily A member 2) (hBRM) Length = 1586 Score = 27.7 bits (60), Expect = 7.0 Identities = 18/76 (23%), Positives = 30/76 (39%) Frame = +1 Query: 82 PSTGQPLRLSLAGAAAIAVPSQARRLPAVRTPSPTLAVGL*GCIKEMEEVENSSKRKAPE 261 PST Q L + G P A + PA P P++ G + +++ R +P Sbjct: 268 PSTPQKLPVPAPGGRPSPAPPAAAQPPAAAVPGPSVPQPAPGQPSPVLQLQQKQSRISPI 327 Query: 262 LSSEDNSSAVVLHEQE 309 + +L E+E Sbjct: 328 QKPQGLDPVEILQERE 343
>MARCS_RAT (P30009) Myristoylated alanine-rich C-kinase substrate (MARCKS)| (Protein kinase C substrate 80 kDa protein) Length = 308 Score = 27.7 bits (60), Expect = 7.0 Identities = 15/38 (39%), Positives = 21/38 (55%) Frame = +1 Query: 217 EMEEVENSSKRKAPELSSEDNSSAVVLHEQEPLPGSTA 330 E E+ E + A E +E+ S AV +EP PG+TA Sbjct: 224 EPEQPEQPEQPAAEEPRAEEPSEAVGEKAEEPAPGATA 261
>IF4G1_HUMAN (Q04637) Eukaryotic translation initiation factor 4 gamma 1| (eIF-4-gamma 1) (eIF-4G1) (eIF-4G 1) (p220) Length = 1600 Score = 27.3 bits (59), Expect = 9.1 Identities = 17/55 (30%), Positives = 27/55 (49%) Frame = +1 Query: 211 IKEMEEVENSSKRKAPELSSEDNSSAVVLHEQEPLPGSTAKRQNLARSCIHEVAV 375 ++E EE E +A E SE ++ E P+P + + QNL + +VAV Sbjct: 457 MEEEEEEEEGEAGEAGEAESEKGGEELLPPESTPIPANLS--QNLEAAAATQVAV 509
>FBN3_HUMAN (Q75N90) Fibrillin-3 precursor| Length = 2809 Score = 27.3 bits (59), Expect = 9.1 Identities = 12/25 (48%), Positives = 14/25 (56%) Frame = -1 Query: 164 AGRRRAWEGTAMAAAPASERRRGWP 90 AG + W+G AA P RRRG P Sbjct: 27 AGGQGRWDGALEAAGPGRVRRRGSP 51
>ASP_DROME (Q9VC45) Protein abnormal spindle| Length = 1954 Score = 27.3 bits (59), Expect = 9.1 Identities = 16/50 (32%), Positives = 25/50 (50%) Frame = +1 Query: 229 VENSSKRKAPELSSEDNSSAVVLHEQEPLPGSTAKRQNLARSCIHEVAVP 378 V+N KR++ ELS D S L+ E + S K+Q + + + A P Sbjct: 483 VKNPHKRRSHELSFSDAPSNESLYRNETVAISPPKKQRVEDTTLPRSAAP 532
>VNUA_PRVKA (P33485) Probable nuclear antigen| Length = 1733 Score = 27.3 bits (59), Expect = 9.1 Identities = 14/27 (51%), Positives = 15/27 (55%) Frame = -1 Query: 176 GVRTAGRRRAWEGTAMAAAPASERRRG 96 G R G+RR EGT AAA A E G Sbjct: 317 GRRRGGKRRRAEGTEAAAADAEEEEDG 343
>TRIPB_HUMAN (Q15643) Thyroid receptor-interacting protein 11 (TRIP-11)| (Golgi-associated microtubule-binding protein 210) (GMAP-210) (Trip230) (Clonal evolution related gene on chromosome 14) Length = 1979 Score = 27.3 bits (59), Expect = 9.1 Identities = 16/42 (38%), Positives = 25/42 (59%) Frame = +1 Query: 214 KEMEEVENSSKRKAPELSSEDNSSAVVLHEQEPLPGSTAKRQ 339 K+ME++E+ K +LSS +N ++ EQE L + KRQ Sbjct: 306 KKMEQLEDKIKDINKKLSSAENDRDILRREQEQL--NVEKRQ 345
>PABPB_XENLA (Q6IP09) Polyadenylate-binding protein 1-B (Poly(A)-binding protein| 1-B) (Cytoplasmic poly(A)-binding protein 1-B) (PABP-B) (PABP 1-B) (xPABP1-B) Length = 633 Score = 27.3 bits (59), Expect = 9.1 Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 4/101 (3%) Frame = +1 Query: 94 QPLRLSLAGAAAIAVPSQA---RRLPAVRTPSPTLAVGL*GCIKEMEEVENSSKRKAPE- 261 +PL S+ AA Q R P ++ PTLA + G + E++ E ++PE Sbjct: 541 EPLTASMLAAAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPES 600 Query: 262 LSSEDNSSAVVLHEQEPLPGSTAKRQNLARSCIHEVAVPTA 384 L S+ + + VL + + A+ + VPTA Sbjct: 601 LRSKVDEAVAVLQAHQ--------AKEAAQKVVSATGVPTA 633
>ICP0_HHV2H (P28284) Trans-acting transcriptional protein ICP0 (VMW118 protein)| Length = 825 Score = 27.3 bits (59), Expect = 9.1 Identities = 12/20 (60%), Positives = 16/20 (80%) Frame = +2 Query: 26 PRAAASP*LSVTADASTPNP 85 PRAAA+P +S +ADA+ P P Sbjct: 423 PRAAAAPVVSASADAAGPAP 442
>CEF1_KLULA (Q6CU65) Pre-mRNA-splicing factor CEF1| Length = 543 Score = 27.3 bits (59), Expect = 9.1 Identities = 14/38 (36%), Positives = 25/38 (65%), Gaps = 2/38 (5%) Frame = +1 Query: 214 KEMEEVENSSKRKAP--ELSSEDNSSAVVLHEQEPLPG 321 +E+++ SK KAP + SS+ + + + +EQ+PLPG Sbjct: 187 RELKQAGVDSKIKAPRKKYSSQMDYNEDIAYEQQPLPG 224
>MARCS_MOUSE (P26645) Myristoylated alanine-rich C-kinase substrate (MARCKS)| Length = 308 Score = 27.3 bits (59), Expect = 9.1 Identities = 14/38 (36%), Positives = 20/38 (52%) Frame = +1 Query: 217 EMEEVENSSKRKAPELSSEDNSSAVVLHEQEPLPGSTA 330 E E+ E + A E +E+ S A +EP PG+TA Sbjct: 224 EPEQPEQPEQPAAEEPQAEEQSEAAGEKAEEPAPGATA 261
>EFS_HUMAN (O43281) Embryonal Fyn-associated substrate (HEFS)| Length = 561 Score = 27.3 bits (59), Expect = 9.1 Identities = 21/72 (29%), Positives = 29/72 (40%) Frame = +1 Query: 109 SLAGAAAIAVPSQARRLPAVRTPSPTLAVGL*GCIKEMEEVENSSKRKAPELSSEDNSSA 288 SL G I ++ + LPA P P+L+ + S AP+ S+ED Sbjct: 50 SLHGQQGIVPANRVKLLPAGPAPKPSLS--------PASPAQPGSPYPAPDHSNEDQEVY 101 Query: 289 VVLHEQEPLPGS 324 VV P P S Sbjct: 102 VVPPPARPCPTS 113
>WRKY9_ARATH (Q9C9F0) Probable WRKY transcription factor 9 (WRKY DNA-binding| protein 9) Length = 374 Score = 27.3 bits (59), Expect = 9.1 Identities = 19/78 (24%), Positives = 35/78 (44%) Frame = +1 Query: 106 LSLAGAAAIAVPSQARRLPAVRTPSPTLAVGL*GCIKEMEEVENSSKRKAPELSSEDNSS 285 L + G + + S+AR+ A R+PS +GL E ++ + SK NSS Sbjct: 144 LGVQGKRCVDITSKARKRGAERSPSMEREIGL-SLSLEKKQKQEESKEAVQSHHQRYNSS 202 Query: 286 AVVLHEQEPLPGSTAKRQ 339 ++ ++ + S R+ Sbjct: 203 SLDMNMPRIISSSQGNRK 220 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 48,337,593 Number of Sequences: 219361 Number of extensions: 799962 Number of successful extensions: 3700 Number of sequences better than 10.0: 41 Number of HSP's better than 10.0 without gapping: 3474 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3697 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 1386249648 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
