ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl18e12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ATX4_ARATH (Q9SUE7) Histone-lysine N-methyltransferase ATX4 (EC ... 30 1.9
2ATX5_ARATH (Q8GZ42) Histone-lysine N-methyltransferase ATX5 (EC ... 28 4.2
3TRKA_ARCFU (O29420) Trk system potassium uptake protein trkA hom... 27 9.3
4CESA1_ARATH (O48946) Cellulose synthase A catalytic subunit 1 [U... 27 9.3

>ATX4_ARATH (Q9SUE7) Histone-lysine N-methyltransferase ATX4 (EC 2.1.1.43)|
           (Trithorax-homolog protein 4) (TRX-homolog protein 4)
           (Trithorax 4) (Protein SET DOMAIN GROUP 16)
          Length = 990

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
 Frame = +1

Query: 118 ILTEKTRRAQATLKGFVAERGYACACD-SSCGYRRDGKALSAVEFEKHAGAKSKN 279
           +L +K     A ++G    R +   C   SCG ++  KALS  E+E+H G+KSKN
Sbjct: 488 VLPDKVIVVCAGVEGVYFPRLHLVVCKCGSCGPKK--KALS--EWERHTGSKSKN 538



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>ATX5_ARATH (Q8GZ42) Histone-lysine N-methyltransferase ATX5 (EC 2.1.1.43)|
           (Trithorax-homolog protein 5) (TRX-homolog protein 5)
           (Protein SET DOMAIN GROUP 29)
          Length = 1043

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 17/31 (54%), Positives = 21/31 (67%)
 Frame = +1

Query: 187 CACDSSCGYRRDGKALSAVEFEKHAGAKSKN 279
           C C  SCG  R  KALS  E+E+H G+K+KN
Sbjct: 519 CKC-GSCGPER--KALS--EWERHTGSKAKN 544



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>TRKA_ARCFU (O29420) Trk system potassium uptake protein trkA homolog|
           (K(+)-uptake protein trkA homolog)
          Length = 436

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +1

Query: 208 GYRRDGKALSAVEFEKHAGAKSKNQNGHIFLPNGTSL 318
           G + DGKA++ +   ++    S  +NGHI +P G ++
Sbjct: 158 GSKADGKAIADLYLPQNVVIASIYRNGHIEIPRGDTV 194



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>CESA1_ARATH (O48946) Cellulose synthase A catalytic subunit 1 [UDP-forming] (EC|
           2.4.1.12) (AtCesA-1) (Radially swollen protein 1)
           (AtRSW1)
          Length = 1081

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +1

Query: 199 SSCGYRRDGKALSAVEFEKHAGAKSKNQNGHIF 297
           S CG R+ GK+     +EK  G    + N  +F
Sbjct: 661 SCCGSRKKGKSSKKYNYEKRRGINRSDSNAPLF 693


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,317,599
Number of Sequences: 219361
Number of extensions: 465670
Number of successful extensions: 1096
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1073
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1096
length of database: 80,573,946
effective HSP length: 99
effective length of database: 58,857,207
effective search space used: 1412572968
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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