ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl18e12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 127 3e-26
2gb|AC083942.8| Genomic sequence for Oryza sativa, Nipponbare str... 127 3e-26
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 127 3e-26
4ref|NM_170103.1| Drosophila melanogaster Glutamyl-prolyl-tRNA sy... 44 0.32
5ref|NM_079747.2| Drosophila melanogaster Glutamyl-prolyl-tRNA sy... 44 0.32
6gb|AY058703.1| Drosophila melanogaster LD42739 full length cDNA 44 0.32
7gb|AC007929.8|AC007929 Drosophila melanogaster, chromosome 3R, r... 44 0.32
8gb|AC008202.4|AC008202 Drosophila melanogaster, chromosome 3R, r... 44 0.32
9gb|AE003745.4| Drosophila melanogaster chromosome 3R, section 83... 44 0.32
10gb|BT001645.1| Drosophila melanogaster RE41560 full insert cDNA 44 0.32
11gb|U59923.1|DMU59923 Drosophila melanogaster glutamyl-prolyl-tRN... 44 0.32
12gb|M74104.1|DROGPTRNA Drosophila melanogaster glu-prolyl tRNA am... 44 0.32
13gb|CP000352.1| Ralstonia metallidurans CH34, complete genome 42 1.3
14emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB 42 1.3
15ref|XM_604045.2| PREDICTED: Bos taurus similar to Mucin-5B precu... 40 5.0
16gb|AC101229.8| Mus musculus chromosome 8, clone RP23-96L20, comp... 40 5.0
17ref|XM_501387.1| Yarrowia lipolytica CLIB122, YALI0C03135g predi... 40 5.0
18gb|AF521878.1| Streptomyces narbonensis desosamine biosynthetic ... 40 5.0
19gb|BT004239.1| Arabidopsis thaliana clone RAFL15-24-F19 (R20504) 40 5.0
20dbj|AB013393.2| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 5.0
21emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 40 5.0
22gb|AC151991.2| Mus musculus BAC clone RP23-216P20 from 8, comple... 40 5.0
23gb|AF079762.1|AF079762 Streptomyces venezuelae desosamine biosyn... 40 5.0
24gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 40 5.0
25emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB1... 40 5.0 
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  127 bits (64), Expect = 3e-26
 Identities = 103/116 (88%)
 Strand = Plus / Plus

                                                                           
Query: 233     tgtcggcggtggagttcgagaagcacgcgggggcgaaatccaagaaccagaacggccaca 292
               |||||||| || ||||||||||||||||||||| ||  || |||||||||||||||||||
Sbjct: 9452651 tgtcggcgctgcagttcgagaagcacgcgggggtgacgtcgaagaaccagaacggccaca 9452710

                                                                       
Query: 293     tcttcctccccaacggcacctcgctctacggcctcttccacgcgctcagggaggtg 348
               ||||||||| |||||||  |||||||||||  |||||||||  |||||||||||||
Sbjct: 9452711 tcttcctccgcaacggccgctcgctctacgagctcttccacaagctcagggaggtg 9452766
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>gb|AC083942.8| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0002D01, from chromosome 3, complete sequence
          Length = 187589

 Score =  127 bits (64), Expect = 3e-26
 Identities = 103/116 (88%)
 Strand = Plus / Plus

                                                                          
Query: 233    tgtcggcggtggagttcgagaagcacgcgggggcgaaatccaagaaccagaacggccaca 292
              |||||||| || ||||||||||||||||||||| ||  || |||||||||||||||||||
Sbjct: 150051 tgtcggcgctgcagttcgagaagcacgcgggggtgacgtcgaagaaccagaacggccaca 150110

                                                                      
Query: 293    tcttcctccccaacggcacctcgctctacggcctcttccacgcgctcagggaggtg 348
              ||||||||| |||||||  |||||||||||  |||||||||  |||||||||||||
Sbjct: 150111 tcttcctccgcaacggccgctcgctctacgagctcttccacaagctcagggaggtg 150166
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  127 bits (64), Expect = 3e-26
 Identities = 103/116 (88%)
 Strand = Plus / Plus

                                                                           
Query: 233     tgtcggcggtggagttcgagaagcacgcgggggcgaaatccaagaaccagaacggccaca 292
               |||||||| || ||||||||||||||||||||| ||  || |||||||||||||||||||
Sbjct: 9450772 tgtcggcgctgcagttcgagaagcacgcgggggtgacgtcgaagaaccagaacggccaca 9450831

                                                                       
Query: 293     tcttcctccccaacggcacctcgctctacggcctcttccacgcgctcagggaggtg 348
               ||||||||| |||||||  |||||||||||  |||||||||  |||||||||||||
Sbjct: 9450832 tcttcctccgcaacggccgctcgctctacgagctcttccacaagctcagggaggtg 9450887
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>ref|NM_170103.1| Drosophila melanogaster Glutamyl-prolyl-tRNA synthetase CG5394-RB,
            transcript variant B (Aats-glupro), mRNA
          Length = 3157

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 229  gccttgtcggcggtggagttcg 250
            ||||||||||||||||||||||
Sbjct: 2450 gccttgtcggcggtggagttcg 2471
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>ref|NM_079747.2| Drosophila melanogaster Glutamyl-prolyl-tRNA synthetase CG5394-RA,
            transcript variant A (Aats-glupro), mRNA
          Length = 5415

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 229  gccttgtcggcggtggagttcg 250
            ||||||||||||||||||||||
Sbjct: 4708 gccttgtcggcggtggagttcg 4729
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>gb|AY058703.1| Drosophila melanogaster LD42739 full length cDNA
          Length = 5418

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 229  gccttgtcggcggtggagttcg 250
            ||||||||||||||||||||||
Sbjct: 4680 gccttgtcggcggtggagttcg 4701
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>gb|AC007929.8|AC007929 Drosophila melanogaster, chromosome 3R, region 95A-95C, BAC clone
              BACR05C11, complete sequence
          Length = 171376

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 229    gccttgtcggcggtggagttcg 250
              ||||||||||||||||||||||
Sbjct: 118271 gccttgtcggcggtggagttcg 118250
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>gb|AC008202.4|AC008202 Drosophila melanogaster, chromosome 3R, region 95C-95D, BAC clone
             BACR15J11, complete sequence
          Length = 186159

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 229   gccttgtcggcggtggagttcg 250
             ||||||||||||||||||||||
Sbjct: 21275 gccttgtcggcggtggagttcg 21254
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>gb|AE003745.4| Drosophila melanogaster chromosome 3R, section 83 of 118 of the complete
              sequence
          Length = 230236

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 229    gccttgtcggcggtggagttcg 250
              ||||||||||||||||||||||
Sbjct: 151163 gccttgtcggcggtggagttcg 151142
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>gb|BT001645.1| Drosophila melanogaster RE41560 full insert cDNA
          Length = 3166

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 229  gccttgtcggcggtggagttcg 250
            ||||||||||||||||||||||
Sbjct: 2450 gccttgtcggcggtggagttcg 2471
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>gb|U59923.1|DMU59923 Drosophila melanogaster glutamyl-prolyl-tRNA synthetase gene,
            complete cds
          Length = 7984

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 229  gccttgtcggcggtggagttcg 250
            ||||||||||||||||||||||
Sbjct: 7238 gccttgtcggcggtggagttcg 7259
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>gb|M74104.1|DROGPTRNA Drosophila melanogaster glu-prolyl tRNA aminoacyl synthetase mRNA,
            complete cds
          Length = 5455

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 229  gccttgtcggcggtggagttcg 250
            ||||||||||||||||||||||
Sbjct: 4709 gccttgtcggcggtggagttcg 4730
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>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome
          Length = 3928089

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 228     ggccttgtcggcggtggagtt 248
               |||||||||||||||||||||
Sbjct: 3477465 ggccttgtcggcggtggagtt 3477445
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>emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB
          Length = 1683333

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 207    cggctaccgccgcgacggcaa 227
              |||||||||||||||||||||
Sbjct: 739063 cggctaccgccgcgacggcaa 739083
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>ref|XM_604045.2| PREDICTED: Bos taurus similar to Mucin-5B precursor (Mucin 5 subtype
            B, tracheobronchial) (High molecular weight salivary
            mucin MG1) (Sublingual gland mucin) (LOC525692), mRNA
          Length = 5070

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 182  acgcctgcgcctgcgactcg 201
            ||||||||||||||||||||
Sbjct: 3188 acgcctgcgcctgcgactcg 3207
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>gb|AC101229.8| Mus musculus chromosome 8, clone RP23-96L20, complete sequence
          Length = 213812

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 281    agaacggccacatcttcctc 300
              ||||||||||||||||||||
Sbjct: 147692 agaacggccacatcttcctc 147711
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>ref|XM_501387.1| Yarrowia lipolytica CLIB122, YALI0C03135g predicted mRNA
          Length = 2886

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 269 aatccaagaaccagaacggccaca 292
           ||||||| ||||||||||||||||
Sbjct: 25  aatccaaaaaccagaacggccaca 48
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>gb|AF521878.1| Streptomyces narbonensis desosamine biosynthetic gene cluster, partial
             sequence
          Length = 17665

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 308   gcacctcgctctacggcctc 327
             ||||||||||||||||||||
Sbjct: 11585 gcacctcgctctacggcctc 11566
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>gb|BT004239.1| Arabidopsis thaliana clone RAFL15-24-F19 (R20504)
          Length = 722

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 339 cagggaggtggtggacgagg 358
           ||||||||||||||||||||
Sbjct: 436 cagggaggtggtggacgagg 455
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>dbj|AB013393.2| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MJE4
          Length = 63989

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 339   cagggaggtggtggacgagg 358
             ||||||||||||||||||||
Sbjct: 62671 cagggaggtggtggacgagg 62652
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>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 221     acggcaaggccttgtcggcg 240
               ||||||||||||||||||||
Sbjct: 2304994 acggcaaggccttgtcggcg 2304975
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>gb|AC151991.2| Mus musculus BAC clone RP23-216P20 from 8, complete sequence
          Length = 174533

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 281   agaacggccacatcttcctc 300
             ||||||||||||||||||||
Sbjct: 26723 agaacggccacatcttcctc 26704
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>gb|AF079762.1|AF079762 Streptomyces venezuelae desosamine biosynthetic gene cluster, complete
             sequence
          Length = 12441

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 308   gcacctcgctctacggcctc 327
             ||||||||||||||||||||
Sbjct: 10240 gcacctcgctctacggcctc 10221
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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 209     gctaccgccgcgacggcaag 228
               ||||||||||||||||||||
Sbjct: 4718849 gctaccgccgcgacggcaag 4718830
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>emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB122 of Yarrowia lipolytica
          Length = 3272609

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 269    aatccaagaaccagaacggccaca 292
              ||||||| ||||||||||||||||
Sbjct: 420738 aatccaaaaaccagaacggccaca 420761


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,587,839
Number of Sequences: 3902068
Number of extensions: 2587839
Number of successful extensions: 40103
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 39810
Number of HSP's gapped (non-prelim): 293
length of query: 373
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 351
effective length of database: 17,147,199,772
effective search space: 6018667119972
effective search space used: 6018667119972
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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