ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl18e08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC069419.20| Homo sapiens 3 BAC RP11-11D18 (Roswell Park Canc... 42 0.35
2gb|AC154210.2| Mus musculus BAC clone RP24-113C3 from chromosome... 42 0.35
3gb|AF380344.1|AF380343S2 Homo sapiens pontin 52 (RUVBL1) gene, e... 42 0.35
4gb|AC154748.2| Mus musculus BAC clone RP23-116P6 from chromosome... 42 0.35
5gb|AE004522.1| Pseudomonas aeruginosa PAO1, section 83 of 529 of... 42 0.35
6emb|BX647488.1|HSM807634 Homo sapiens mRNA; cDNA DKFZp686C14128 ... 42 0.35
7ref|NM_188119.1| Oryza sativa (japonica cultivar-group), Ozsa855... 40 1.4
8gb|AY576796.1| Actinoplanes phage phiAsp2, complete genome 40 1.4
9gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 40 1.4
10gb|AC145970.2| Pan troglodytes BAC clone RP43-17L12 from 7, comp... 40 1.4
11emb|AJ004801.1|BHV1CGEN Bovine herpesvirus type 1.1 complete genome 40 1.4
12gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 40 1.4
13emb|AL161450.14| Human DNA sequence from clone RP11-39K24 on chr... 40 1.4
14emb|AL939123.1|SCO939123 Streptomyces coelicolor A3(2) complete ... 40 1.4
15gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, comp... 40 1.4
16dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 1.4
17gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 1.4
18dbj|AP001072.1| Oryza sativa (japonica cultivar-group) genomic D... 40 1.4
19dbj|AP000815.1| Oryza sativa (japonica cultivar-group) genomic D... 40 1.4
20gb|L14320.1|HSBBICP4A Bovine herpesvirus type 1 early-intermedia... 40 1.4
21gb|L14321.1|HSBBICP4B Bovine herpesvirus type 1 immedidate-early... 40 1.4
22gb|AC166150.2| Mus musculus chromosome 1, clone RP23-321N22, com... 38 5.5
23gb|AC087833.3| Papio anubis clone RP41-78F4, complete sequence 38 5.5
24gb|BC058111.1| Mus musculus zinc fingers and homeoboxes 3, mRNA ... 38 5.5
25gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete ge... 38 5.5
26ref|NM_177263.3| Mus musculus zinc fingers and homeoboxes 3 (Zhx... 38 5.5
27gb|AC122204.3| Mus musculus BAC clone RP23-73N8 from chromosome ... 38 5.5
28gb|AC161346.7| Mus musculus chromosome 1, clone RP24-335G4, comp... 38 5.5
29gb|AC005081.3| Homo sapiens BAC clone CTA-270D13 from 7, complet... 38 5.5
30ref|XM_984747.1| PREDICTED: Mus musculus hypothetical protein LO... 38 5.5
31emb|CR956389.6| Pig DNA sequence from clone CH242-228K14 on chro... 38 5.5
32gb|AC091504.3| Pan troglodytes clone RP43-13M21, complete sequence 38 5.5
33emb|BX255925.17| Human DNA sequence from clone RP13-122B23 on ch... 38 5.5
34gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, compl... 38 5.5
35emb|AL079301.14|HSDJ753M9 Human DNA sequence from clone RP4-753M... 38 5.5
36emb|BX640451.1| Bordetella bronchiseptica strain RB50, complete ... 38 5.5
37emb|BX640444.1| Bordetella bronchiseptica strain RB50, complete ... 38 5.5
38emb|BX640427.1| Bordetella parapertussis strain 12822, complete ... 38 5.5
39emb|BX640415.1| Bordetella pertussis strain Tohama I, complete g... 38 5.5
40gb|AC078777.15| Homo sapiens 12 BAC RP11-335O4 (Roswell Park Can... 38 5.5
41dbj|AK143296.1| Mus musculus 2 days pregnant adult female oviduc... 38 5.5
42dbj|AK147259.1| Mus musculus cDNA, RIKEN full-length enriched li... 38 5.5
43dbj|AK163429.1| Mus musculus adult male corpora quadrigemina cDN... 38 5.5
44dbj|AK029603.1| Mus musculus adult male testis cDNA, RIKEN full-... 38 5.5
45gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 38 5.5
46gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 38 5.5
47gb|AC004089.25| Homo sapiens Chromosome 7 BAC Clone 155b01, comp... 38 5.5
48dbj|AK030057.1| Mus musculus adult male testis cDNA, RIKEN full-... 38 5.5
49dbj|AK043624.1| Mus musculus 10 days neonate cortex cDNA, RIKEN ... 38 5.5
50gb|AC079839.5| Homo sapiens BAC clone RP11-1152J17 from 2, compl... 38 5.5
51dbj|AB099703.2| Mus musculus ZHX3 gene for transcription factor ... 38 5.5
52dbj|AB099527.2| Mus musculus mRNA for transcription factor ZHX3,... 38 5.5
53gb|AC005015.2|AC005015 Homo sapiens BAC clone GS1-166C5 from 7q1... 38 5.5
54gb|AY664419.1| Zea mays cultivar Mo17 locus 9009, complete sequence 38 5.5
55gb|AY664415.1| Zea mays cultivar B73 locus 9009, complete sequence 38 5.5
56gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, com... 38 5.5
57gb|DQ317973.1| Mus musculus zinc fingers and homeoboxes 3 (Zhx3)... 38 5.5
58gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome 38 5.5
59dbj|AP001496.4| Homo sapiens genomic DNA, chromosome 18 clone:RP... 38 5.5
60emb|AL590389.8| Mouse DNA sequence from clone RP23-393F23 on chr... 38 5.5 
>gb|AC069419.20| Homo sapiens 3 BAC RP11-11D18 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 61415

 Score = 42.1 bits (21), Expect = 0.35
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 1     tgtcagggacactctgctctc 21
             |||||||||||||||||||||
Sbjct: 55239 tgtcagggacactctgctctc 55219
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>gb|AC154210.2| Mus musculus BAC clone RP24-113C3 from chromosome 13, complete sequence
          Length = 193176

 Score = 42.1 bits (21), Expect = 0.35
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 92     tctctcaccatggagaagccc 112
              |||||||||||||||||||||
Sbjct: 177775 tctctcaccatggagaagccc 177755
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>gb|AF380344.1|AF380343S2 Homo sapiens pontin 52 (RUVBL1) gene, exons 2 through 11, and complete
             cds
          Length = 40881

 Score = 42.1 bits (21), Expect = 0.35
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 1     tgtcagggacactctgctctc 21
             |||||||||||||||||||||
Sbjct: 36705 tgtcagggacactctgctctc 36685
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>gb|AC154748.2| Mus musculus BAC clone RP23-116P6 from chromosome 13, complete sequence
          Length = 203908

 Score = 42.1 bits (21), Expect = 0.35
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 92     tctctcaccatggagaagccc 112
              |||||||||||||||||||||
Sbjct: 193131 tctctcaccatggagaagccc 193151
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>gb|AE004522.1| Pseudomonas aeruginosa PAO1, section 83 of 529 of the complete genome
          Length = 15724

 Score = 42.1 bits (21), Expect = 0.35
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 45    aagcgccggcgcgcggccccggcggcgcg 73
             |||||||||||||||||  ||||||||||
Sbjct: 14294 aagcgccggcgcgcggcggcggcggcgcg 14266
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>emb|BX647488.1|HSM807634 Homo sapiens mRNA; cDNA DKFZp686C14128 (from clone DKFZp686C14128)
          Length = 4094

 Score = 42.1 bits (21), Expect = 0.35
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 1   tgtcagggacactctgctctc 21
           |||||||||||||||||||||
Sbjct: 446 tgtcagggacactctgctctc 426
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>ref|NM_188119.1| Oryza sativa (japonica cultivar-group), Ozsa8551 predicted mRNA
          Length = 2388

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 51   cggcgcgcggccccggcggc 70
            ||||||||||||||||||||
Sbjct: 1541 cggcgcgcggccccggcggc 1560
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>gb|AY576796.1| Actinoplanes phage phiAsp2, complete genome
          Length = 58638

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 57   gcggccccggcggcgcgacc 76
            ||||||||||||||||||||
Sbjct: 9817 gcggccccggcggcgcgacc 9836
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>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 53    gcgcgcggccccggcggcgc 72
             ||||||||||||||||||||
Sbjct: 48421 gcgcgcggccccggcggcgc 48440
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>gb|AC145970.2| Pan troglodytes BAC clone RP43-17L12 from 7, complete sequence
          Length = 182677

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 51    cggcgcgcggccccggcggc 70
             ||||||||||||||||||||
Sbjct: 10351 cggcgcgcggccccggcggc 10332
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>emb|AJ004801.1|BHV1CGEN Bovine herpesvirus type 1.1 complete genome
          Length = 135301

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 53     gcgcgcggccccggcggcgc 72
              ||||||||||||||||||||
Sbjct: 132301 gcgcgcggccccggcggcgc 132320



 Score = 40.1 bits (20), Expect = 1.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 53     gcgcgcggccccggcggcgc 72
              ||||||||||||||||||||
Sbjct: 105917 gcgcgcggccccggcggcgc 105898
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>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 57    gcggccccggcggcgcgacc 76
             ||||||||||||||||||||
Sbjct: 90997 gcggccccggcggcgcgacc 91016
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>emb|AL161450.14| Human DNA sequence from clone RP11-39K24 on chromosome 9 Contains the
             3' end of the JAK2 gene for Janus kinase 2 (a protein
             tyrosine kinase), a casein kinase pseudogene, a
             trans-prenyltransferase (TPT) pseudogene, a NADH
             dehydrogenase 6 (MTND6) pseuodgene, a  NADH dehydrogenase
             1 (MTND1) pseudogene, a cytochrome c oxidase I (MTCO1)
             pseudogene, a  cytochrome c oxidase II (MTCO2) pseudogene,
             an ATP synthase 6 (MTATP6) pseudogene, a cytochrome c
             oxidase III (MTCO3) pseudogene, a NADH dehydrogenase 4
             (MTND4)pseudogene, a pseudogene similar to part of NADH
             dehydrogenase 5 (MTND5), a transcription factor 3 (E2A
             immunoglobulin enhancer binding factors E12/E47) (TCF3)
             pseudogene, an immunoglobulin heavy constant epsilon
             pseudogene 2 (IGHEP2), a novel gene, the INSL6 gene for
             insulin-like 6 (RIF1) and 4 CpG islands, complete sequence
          Length = 171146

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 51    cggcgcgcggccccggcggc 70
             ||||||||||||||||||||
Sbjct: 67411 cggcgcgcggccccggcggc 67430
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>emb|AL939123.1|SCO939123 Streptomyces coelicolor A3(2) complete genome; segment 20/29
          Length = 300100

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 59     ggccccggcggcgcgaccac 78
              ||||||||||||||||||||
Sbjct: 138762 ggccccggcggcgcgaccac 138743
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>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 48     cgccggcgcgcggccccggc 67
              ||||||||||||||||||||
Sbjct: 714139 cgccggcgcgcggccccggc 714158
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 51      cggcgcgcggccccggcggc 70
               ||||||||||||||||||||
Sbjct: 9864336 cggcgcgcggccccggcggc 9864355
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 60      gccccggcggcgcgaccacc 79
               ||||||||||||||||||||
Sbjct: 3240672 gccccggcggcgcgaccacc 3240691



 Score = 38.2 bits (19), Expect = 5.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                      
Query: 51      cggcgcgcggccccggcggcgcg 73
               ||||| |||||||||||||||||
Sbjct: 3013913 cggcgggcggccccggcggcgcg 3013935



 Score = 38.2 bits (19), Expect = 5.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 55      gcgcggccccggcggcgcg 73
               |||||||||||||||||||
Sbjct: 2020591 gcgcggccccggcggcgcg 2020573



 Score = 38.2 bits (19), Expect = 5.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 55      gcgcggccccggcggcgcg 73
               |||||||||||||||||||
Sbjct: 1482086 gcgcggccccggcggcgcg 1482104
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>dbj|AP001072.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0025D05
          Length = 145684

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 51     cggcgcgcggccccggcggc 70
              ||||||||||||||||||||
Sbjct: 128586 cggcgcgcggccccggcggc 128605
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>dbj|AP000815.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
           clone:P0003H10
          Length = 142418

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 51  cggcgcgcggccccggcggc 70
           ||||||||||||||||||||
Sbjct: 102 cggcgcgcggccccggcggc 121
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>gb|L14320.1|HSBBICP4A Bovine herpesvirus type 1 early-intermediate transcription control
            protein (BICP4) gene, complete cds
          Length = 8113

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 53   gcgcgcggccccggcggcgc 72
            ||||||||||||||||||||
Sbjct: 5114 gcgcgcggccccggcggcgc 5133
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>gb|L14321.1|HSBBICP4B Bovine herpesvirus type 1 immedidate-early transcriptional control
            protein (BICP4) gene, 5' end
          Length = 2764

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 53   gcgcgcggccccggcggcgc 72
            ||||||||||||||||||||
Sbjct: 2362 gcgcgcggccccggcggcgc 2381
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>gb|AC166150.2| Mus musculus chromosome 1, clone RP23-321N22, complete sequence
          Length = 214765

 Score = 38.2 bits (19), Expect = 5.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 50     ccggcgcgcggccccggcg 68
              |||||||||||||||||||
Sbjct: 174219 ccggcgcgcggccccggcg 174201
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>gb|AC087833.3| Papio anubis clone RP41-78F4, complete sequence
          Length = 154295

 Score = 38.2 bits (19), Expect = 5.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 99    ccatggagaagcccgtggc 117
             |||||||||||||||||||
Sbjct: 97999 ccatggagaagcccgtggc 97981
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>gb|BC058111.1| Mus musculus zinc fingers and homeoboxes 3, mRNA (cDNA clone
           MGC:67301 IMAGE:6836697), complete cds
          Length = 4499

 Score = 38.2 bits (19), Expect = 5.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 1   tgtcagggacactctgctc 19
           |||||||||||||||||||
Sbjct: 928 tgtcagggacactctgctc 910
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>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome
          Length = 3696649

 Score = 38.2 bits (19), Expect = 5.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                      
Query: 57      gcggccccggcggcgcgaccacc 79
               ||||||| |||||||||||||||
Sbjct: 3069630 gcggcccgggcggcgcgaccacc 3069608
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>ref|NM_177263.3| Mus musculus zinc fingers and homeoboxes 3 (Zhx3), mRNA
          Length = 4499

 Score = 38.2 bits (19), Expect = 5.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 1   tgtcagggacactctgctc 19
           |||||||||||||||||||
Sbjct: 928 tgtcagggacactctgctc 910
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>gb|AC122204.3| Mus musculus BAC clone RP23-73N8 from chromosome 1, complete sequence
          Length = 197949

 Score = 38.2 bits (19), Expect = 5.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 52    ggcgcgcggccccggcggc 70
             |||||||||||||||||||
Sbjct: 45901 ggcgcgcggccccggcggc 45919
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>gb|AC161346.7| Mus musculus chromosome 1, clone RP24-335G4, complete sequence
          Length = 191681

 Score = 38.2 bits (19), Expect = 5.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 50   ccggcgcgcggccccggcg 68
            |||||||||||||||||||
Sbjct: 7083 ccggcgcgcggccccggcg 7101
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>gb|AC005081.3| Homo sapiens BAC clone CTA-270D13 from 7, complete sequence
          Length = 180290

 Score = 38.2 bits (19), Expect = 5.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 99    ccatggagaagcccgtggc 117
             |||||||||||||||||||
Sbjct: 46512 ccatggagaagcccgtggc 46530
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>ref|XM_984747.1| PREDICTED: Mus musculus hypothetical protein LOC666583 (LOC666583),
           mRNA
          Length = 804

 Score = 38.2 bits (19), Expect = 5.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 52  ggcgcgcggccccggcggc 70
           |||||||||||||||||||
Sbjct: 613 ggcgcgcggccccggcggc 631
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>emb|CR956389.6| Pig DNA sequence from clone CH242-228K14 on chromosome 17, complete
             sequence
          Length = 46861

 Score = 38.2 bits (19), Expect = 5.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 52    ggcgcgcggccccggcggc 70
             |||||||||||||||||||
Sbjct: 30614 ggcgcgcggccccggcggc 30632
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>gb|AC091504.3| Pan troglodytes clone RP43-13M21, complete sequence
          Length = 139130

 Score = 38.2 bits (19), Expect = 5.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 99    ccatggagaagcccgtggc 117
             |||||||||||||||||||
Sbjct: 15405 ccatggagaagcccgtggc 15387
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>emb|BX255925.17| Human DNA sequence from clone RP13-122B23 on chromosome 9, complete
             sequence
          Length = 100719

 Score = 38.2 bits (19), Expect = 5.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 53    gcgcgcggccccggcggcg 71
             |||||||||||||||||||
Sbjct: 50634 gcgcgcggccccggcggcg 50652
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>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence
          Length = 4895836

 Score = 38.2 bits (19), Expect = 5.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 44      caagcgccggcgcgcggcc 62
               |||||||||||||||||||
Sbjct: 3947905 caagcgccggcgcgcggcc 3947887
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>emb|AL079301.14|HSDJ753M9 Human DNA sequence from clone RP4-753M9 on chromosome 22 Contains EST
             and STS, complete sequence
          Length = 57698

 Score = 38.2 bits (19), Expect = 5.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 50    ccggcgcgcggccccggcg 68
             |||||||||||||||||||
Sbjct: 57337 ccggcgcgcggccccggcg 57319
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>emb|BX640451.1| Bordetella bronchiseptica strain RB50, complete genome; segment 15/16
          Length = 343473

 Score = 38.2 bits (19), Expect = 5.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 47     gcgccggcgcgcggccccg 65
              |||||||||||||||||||
Sbjct: 160292 gcgccggcgcgcggccccg 160310
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>emb|BX640444.1| Bordetella bronchiseptica strain RB50, complete genome; segment 8/16
          Length = 349008

 Score = 38.2 bits (19), Expect = 5.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 55     gcgcggccccggcggcgcg 73
              |||||||||||||||||||
Sbjct: 339283 gcgcggccccggcggcgcg 339301
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>emb|BX640427.1| Bordetella parapertussis strain 12822, complete genome; segment 5/14
          Length = 348997

 Score = 38.2 bits (19), Expect = 5.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 55     gcgcggccccggcggcgcg 73
              |||||||||||||||||||
Sbjct: 247117 gcgcggccccggcggcgcg 247135
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>emb|BX640415.1| Bordetella pertussis strain Tohama I, complete genome; segment 5/12
          Length = 347071

 Score = 38.2 bits (19), Expect = 5.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 55     gcgcggccccggcggcgcg 73
              |||||||||||||||||||
Sbjct: 114393 gcgcggccccggcggcgcg 114411
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>gb|AC078777.15| Homo sapiens 12 BAC RP11-335O4 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 155380

 Score = 38.2 bits (19), Expect = 5.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 47    gcgccggcgcgcggccccg 65
             |||||||||||||||||||
Sbjct: 32315 gcgccggcgcgcggccccg 32333
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>dbj|AK143296.1| Mus musculus 2 days pregnant adult female oviduct cDNA, RIKEN
           full-length enriched library, clone:E230037F05
           product:zinc fingers and homeoboxes 3, full insert
           sequence
          Length = 4462

 Score = 38.2 bits (19), Expect = 5.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 1   tgtcagggacactctgctc 19
           |||||||||||||||||||
Sbjct: 909 tgtcagggacactctgctc 891
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>dbj|AK147259.1| Mus musculus cDNA, RIKEN full-length enriched library,
           clone:M5C1003G16 product:zinc fingers and homeoboxes 3,
           full insert sequence
          Length = 9067

 Score = 38.2 bits (19), Expect = 5.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 1   tgtcagggacactctgctc 19
           |||||||||||||||||||
Sbjct: 750 tgtcagggacactctgctc 732
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>dbj|AK163429.1| Mus musculus adult male corpora quadrigemina cDNA, RIKEN
           full-length enriched library, clone:B230029N03
           product:unclassifiable, full insert sequence
          Length = 2191

 Score = 38.2 bits (19), Expect = 5.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 51  cggcgcgcggccccggcgg 69
           |||||||||||||||||||
Sbjct: 771 cggcgcgcggccccggcgg 789
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>dbj|AK029603.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
           library, clone:4930412E20 product:DJ511B24.3 (KIAA0395
           (PROBABLE HOMEOBOX PROTEIN)) homolog [Homo sapiens],
           full insert sequence
          Length = 3352

 Score = 38.2 bits (19), Expect = 5.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 1   tgtcagggacactctgctc 19
           |||||||||||||||||||
Sbjct: 800 tgtcagggacactctgctc 782
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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 38.2 bits (19), Expect = 5.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 44      caagcgccggcgcgcggcc 62
               |||||||||||||||||||
Sbjct: 3745863 caagcgccggcgcgcggcc 3745881
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 38.2 bits (19), Expect = 5.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 58      cggccccggcggcgcgacc 76
               |||||||||||||||||||
Sbjct: 3287024 cggccccggcggcgcgacc 3287042
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>gb|AC004089.25| Homo sapiens Chromosome 7 BAC Clone 155b01, complete sequence
          Length = 130855

 Score = 38.2 bits (19), Expect = 5.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 99    ccatggagaagcccgtggc 117
             |||||||||||||||||||
Sbjct: 40600 ccatggagaagcccgtggc 40582
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>dbj|AK030057.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
           library, clone:4932418O04 product:DJ511B24.3 (KIAA0395
           (PROBABLE HOMEOBOX PROTEIN)) homolog [Homo sapiens],
           full insert sequence
          Length = 3611

 Score = 38.2 bits (19), Expect = 5.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 1   tgtcagggacactctgctc 19
           |||||||||||||||||||
Sbjct: 893 tgtcagggacactctgctc 875
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>dbj|AK043624.1| Mus musculus 10 days neonate cortex cDNA, RIKEN full-length
          enriched library, clone:A830013B02 product:hypothetical
          protein, full insert sequence
          Length = 969

 Score = 38.2 bits (19), Expect = 5.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                             
Query: 50 ccggcgcgcggccccggcg 68
          |||||||||||||||||||
Sbjct: 27 ccggcgcgcggccccggcg 9
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>gb|AC079839.5| Homo sapiens BAC clone RP11-1152J17 from 2, complete sequence
          Length = 70310

 Score = 38.2 bits (19), Expect = 5.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 51   cggcgcgcggccccggcgg 69
            |||||||||||||||||||
Sbjct: 9166 cggcgcgcggccccggcgg 9148
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>dbj|AB099703.2| Mus musculus ZHX3 gene for transcription factor ZHX3, complete cds
          Length = 13008

 Score = 38.2 bits (19), Expect = 5.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 1    tgtcagggacactctgctc 19
            |||||||||||||||||||
Sbjct: 1997 tgtcagggacactctgctc 1979
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>dbj|AB099527.2| Mus musculus mRNA for transcription factor ZHX3, complete cds
          Length = 2856

 Score = 38.2 bits (19), Expect = 5.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 1   tgtcagggacactctgctc 19
           |||||||||||||||||||
Sbjct: 472 tgtcagggacactctgctc 454
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>gb|AC005015.2|AC005015 Homo sapiens BAC clone GS1-166C5 from 7q11.23-q21.1, complete sequence
          Length = 219935

 Score = 38.2 bits (19), Expect = 5.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 99     ccatggagaagcccgtggc 117
              |||||||||||||||||||
Sbjct: 179340 ccatggagaagcccgtggc 179358
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>gb|AY664419.1| Zea mays cultivar Mo17 locus 9009, complete sequence
          Length = 405672

 Score = 38.2 bits (19), Expect = 5.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 48     cgccggcgcgcggccccggcggc 70
              ||||||||| |||||||||||||
Sbjct: 155295 cgccggcgcccggccccggcggc 155317
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>gb|AY664415.1| Zea mays cultivar B73 locus 9009, complete sequence
          Length = 323584

 Score = 38.2 bits (19), Expect = 5.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 48     cgccggcgcgcggccccggcggc 70
              ||||||||| |||||||||||||
Sbjct: 143357 cgccggcgcccggccccggcggc 143379
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>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 38.2 bits (19), Expect = 5.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 47      gcgccggcgcgcggccccg 65
               |||||||||||||||||||
Sbjct: 2805796 gcgccggcgcgcggccccg 2805814
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>gb|DQ317973.1| Mus musculus zinc fingers and homeoboxes 3 (Zhx3) mRNA, complete
           cds
          Length = 2856

 Score = 38.2 bits (19), Expect = 5.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 1   tgtcagggacactctgctc 19
           |||||||||||||||||||
Sbjct: 472 tgtcagggacactctgctc 454
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>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
          Length = 3551823

 Score = 38.2 bits (19), Expect = 5.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 99      ccatggagaagcccgtggc 117
               |||||||||||||||||||
Sbjct: 1829774 ccatggagaagcccgtggc 1829792
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>dbj|AP001496.4| Homo sapiens genomic DNA, chromosome 18 clone:RP11-835E18, complete
              sequence
          Length = 179358

 Score = 38.2 bits (19), Expect = 5.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 57     gcggccccggcggcgcgac 75
              |||||||||||||||||||
Sbjct: 157903 gcggccccggcggcgcgac 157921
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>emb|AL590389.8| Mouse DNA sequence from clone RP23-393F23 on chromosome 2, complete
             sequence
          Length = 207901

 Score = 38.2 bits (19), Expect = 5.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 1     tgtcagggacactctgctc 19
             |||||||||||||||||||
Sbjct: 51688 tgtcagggacactctgctc 51706


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 658,807
Number of Sequences: 3902068
Number of extensions: 658807
Number of successful extensions: 57828
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 55306
Number of HSP's gapped (non-prelim): 2522
length of query: 120
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 99
effective length of database: 17,151,101,840
effective search space: 1697959082160
effective search space used: 1697959082160
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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