ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl18e06 |
|---|---|
| Clone Library Name | barley_pub |
>UBE12_WHEAT (P31251) Ubiquitin-activating enzyme E1 2| Length = 1051 Score = 73.2 bits (178), Expect = 1e-13 Identities = 38/55 (69%), Positives = 38/55 (69%) Frame = +3 Query: 213 MLPRKREIVAGEVEDLQKKXXXXXXXXXXXXXXXXMARRGNEIDEDLHSRQLAVY 377 MLPRKREIVAGEVEDLQKK MA RGNEIDEDLHSRQLAVY Sbjct: 1 MLPRKREIVAGEVEDLQKKTRAGEGEATREEGDAAMAGRGNEIDEDLHSRQLAVY 55
>UBE11_WHEAT (P20973) Ubiquitin-activating enzyme E1 1| Length = 1051 Score = 72.8 bits (177), Expect = 2e-13 Identities = 38/55 (69%), Positives = 38/55 (69%) Frame = +3 Query: 213 MLPRKREIVAGEVEDLQKKXXXXXXXXXXXXXXXXMARRGNEIDEDLHSRQLAVY 377 MLPRKREIVAGEVEDLQKK MA RGNEIDEDLHSRQLAVY Sbjct: 1 MLPRKREIVAGEVEDLQKKTRAGEGEVTREEGDAAMAGRGNEIDEDLHSRQLAVY 55
>UBE13_WHEAT (P31252) Ubiquitin-activating enzyme E1 3| Length = 1053 Score = 32.0 bits (71), Expect = 0.37 Identities = 14/14 (100%), Positives = 14/14 (100%) Frame = +3 Query: 336 EIDEDLHSRQLAVY 377 EIDEDLHSRQLAVY Sbjct: 45 EIDEDLHSRQLAVY 58
>CP2DP_PIG (O46658) Cytochrome P450 2D25 (EC 1.14.14.-) (CYPIID25) (Vitamin| D(3) 25-hydroxylase) Length = 499 Score = 29.3 bits (64), Expect = 2.4 Identities = 15/32 (46%), Positives = 19/32 (59%) Frame = -2 Query: 350 VLVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 255 +LVDL+ + PG +PLPG G LLQV Sbjct: 20 LLVDLMHRRSRWAPRYPPGPMPLPGLGNLLQV 51
>CP2DQ_RAT (P10634) Cytochrome P450 2D26 (EC 1.14.14.1) (CYPIID26) (P450-DB2)| (P450-CMF2) (Debrisoquine 4-hydroxylase) Length = 500 Score = 29.3 bits (64), Expect = 2.4 Identities = 16/32 (50%), Positives = 19/32 (59%) Frame = -2 Query: 350 VLVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 255 +LVDLV + PG +PLPG G LLQV Sbjct: 21 LLVDLVHRHKFWTAHYPPGPVPLPGLGNLLQV 52
>CP2DH_MACFA (Q29488) Cytochrome P450 2D17 (EC 1.14.14.1) (CYPIID17)| Length = 497 Score = 28.5 bits (62), Expect = 4.1 Identities = 16/37 (43%), Positives = 20/37 (54%) Frame = -2 Query: 365 LATVQVLVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 255 +A +LVDL+ + PG LPLPG G LL V Sbjct: 13 VAIFLLLVDLMHRRQRWAARYPPGPLPLPGLGNLLHV 49
>CP2D6_HUMAN (P10635) Cytochrome P450 2D6 (EC 1.14.14.1) (CYPIID6) (P450-DB1)| (Debrisoquine 4-hydroxylase) Length = 497 Score = 28.5 bits (62), Expect = 4.1 Identities = 16/37 (43%), Positives = 20/37 (54%) Frame = -2 Query: 365 LATVQVLVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 255 +A +LVDL+ + PG LPLPG G LL V Sbjct: 13 VAIFLLLVDLMHRRQRWAARYPPGPLPLPGLGNLLHV 49
>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1| (Plenty-of-prolines 101) Length = 946 Score = 28.1 bits (61), Expect = 5.4 Identities = 14/35 (40%), Positives = 17/35 (48%) Frame = +1 Query: 10 PALQSHPRNPRRTVPRLLPSPTRQANPRFRGGRTR 114 P+ + P RRT PR +P P R R G R R Sbjct: 313 PSPRRRPSPRRRTPPRRMPPPPRHRRSRSPGRRRR 347
>PEX6_GLOLA (Q9C1E9) Peroxisomal biogenesis factor 6 (Peroxin-6) (ClaPEX6)| Length = 1388 Score = 28.1 bits (61), Expect = 5.4 Identities = 12/24 (50%), Positives = 16/24 (66%) Frame = -3 Query: 79 VASGKEAGEGRSV*GFWDGTGGPD 8 V +GK G+G++V GF DGT D Sbjct: 1361 VVNGKGKGKGKAVAGFQDGTASDD 1384
>CP2D6_PANTR (Q2XNC8) Cytochrome P450 2D6 (EC 1.14.14.1) (CYPIID6)| Length = 497 Score = 28.1 bits (61), Expect = 5.4 Identities = 15/32 (46%), Positives = 18/32 (56%) Frame = -2 Query: 350 VLVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 255 +LVDL+ + PG LPLPG G LL V Sbjct: 18 LLVDLMHRRQRWAARYPPGPLPLPGLGNLLHV 49
>CP2D6_PANPA (Q2XNC9) Cytochrome P450 2D6 (EC 1.14.14.1) (CYPIID6)| Length = 497 Score = 28.1 bits (61), Expect = 5.4 Identities = 15/32 (46%), Positives = 18/32 (56%) Frame = -2 Query: 350 VLVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 255 +LVDL+ + PG LPLPG G LL V Sbjct: 18 LLVDLMHRRQRWAARYPPGPLPLPGLGNLLHV 49
>CP2DQ_MOUSE (Q8CIM7) Cytochrome P450 2D26 (EC 1.14.14.1) (CYPIID26)| Length = 500 Score = 28.1 bits (61), Expect = 5.4 Identities = 15/32 (46%), Positives = 18/32 (56%) Frame = -2 Query: 350 VLVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 255 +LVDLV + PG +P PG G LLQV Sbjct: 21 LLVDLVHRRQRWTACYPPGPVPFPGLGNLLQV 52
>CP2DG_CAVPO (Q64403) Cytochrome P450 2D16 (EC 1.14.14.1) (CYPIID16)| Length = 500 Score = 28.1 bits (61), Expect = 5.4 Identities = 15/37 (40%), Positives = 21/37 (56%) Frame = -2 Query: 365 LATVQVLVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 255 +A +LVDL+ + PG +P+PG G LLQV Sbjct: 16 VAIFLLLVDLMHRRQRWAARYPPGPVPVPGLGNLLQV 52
>SURE_HALSA (Q9HQB2) 5'-nucleotidase surE (EC 3.1.3.5) (Nucleoside| 5'-monophosphate phosphohydrolase) Length = 258 Score = 27.7 bits (60), Expect = 7.0 Identities = 13/24 (54%), Positives = 16/24 (66%) Frame = +3 Query: 54 SPASFPDATGESKVSRRSHALDLT 125 +P DATGE V+R SHA D+T Sbjct: 172 APHPDADATGEMVVTRPSHAYDMT 195
>Y559_STRP6 (Q5XD19) UPF0042 protein M6_Spy0559| Length = 296 Score = 27.7 bits (60), Expect = 7.0 Identities = 15/56 (26%), Positives = 30/56 (53%) Frame = -2 Query: 170 RSEEQAVVDGRRELPRQIQRVRPPRNLGFACRVGEGSRRGTVRLGFLGWDWRAGLP 3 +S Q VVD + PRQ+++ + + EGS + ++R+ + + ++ GLP Sbjct: 134 KSMSQHVVDTTKLTPRQLRKT-------ISDQFSEGSNQASLRIEVMSFGFKYGLP 182
>PKNA_MYCTU (P65726) Probable serine/threonine-protein kinase pknA (EC| 2.7.11.1) Length = 431 Score = 27.7 bits (60), Expect = 7.0 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 9/40 (22%) Frame = +3 Query: 15 PPVPSQKP*TDRPSPASFPDAT---------GESKVSRRS 107 PP PSQ P R +PA+ P T G + SRRS Sbjct: 280 PPRPSQTPPPGRAAPAAIPSGTTARVAANSAGRTAASRRS 319
>PKNA_MYCBO (P65727) Probable serine/threonine-protein kinase pknA (EC| 2.7.11.1) Length = 431 Score = 27.7 bits (60), Expect = 7.0 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 9/40 (22%) Frame = +3 Query: 15 PPVPSQKP*TDRPSPASFPDAT---------GESKVSRRS 107 PP PSQ P R +PA+ P T G + SRRS Sbjct: 280 PPRPSQTPPPGRAAPAAIPSGTTARVAANSAGRTAASRRS 319
>CP2DJ_CALJA (O18992) Cytochrome P450 2D19 (EC 1.14.14.1) (CYPIID19) (P450| CM2D-1) Length = 497 Score = 27.7 bits (60), Expect = 7.0 Identities = 15/37 (40%), Positives = 20/37 (54%) Frame = -2 Query: 365 LATVQVLVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 255 +A +LVDL+ + PG +PLPG G LL V Sbjct: 13 VAIFVLLVDLMHRRQRWAARYPPGPMPLPGLGNLLHV 49
>CP2DR_MESAU (Q9QYG6) Cytochrome P450 2D27 (EC 1.14.14.-) (CYPIID27)| Length = 500 Score = 27.7 bits (60), Expect = 7.0 Identities = 15/32 (46%), Positives = 19/32 (59%) Frame = -2 Query: 350 VLVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 255 +LVDL+ + PG +PLPG G LLQV Sbjct: 21 LLVDLMHRRKFWRARYPPGPMPLPGLGNLLQV 52
>CP2DK_MESAU (Q9QYG5) Cytochrome P450 2D20 (EC 1.14.14.-) (CYPIID20)| Length = 500 Score = 27.7 bits (60), Expect = 7.0 Identities = 15/32 (46%), Positives = 19/32 (59%) Frame = -2 Query: 350 VLVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 255 +LVDL+ + PG +PLPG G LLQV Sbjct: 21 LLVDLMHRRKFWRARYPPGPMPLPGLGNLLQV 52
>RS5_RHOS4 (Q3J5Q5) 30S ribosomal protein S5| Length = 187 Score = 27.7 bits (60), Expect = 7.0 Identities = 17/57 (29%), Positives = 24/57 (42%) Frame = -2 Query: 206 RDAAEEPEDGRRRSEEQAVVDGRRELPRQIQRVRPPRNLGFACRVGEGSRRGTVRLG 36 R+ + D R R E D + R + V+ + GFA V G +RG V G Sbjct: 4 RENRRDRRDDRSREETPEFADRLVAINRVSKTVKGGKRFGFAALVVVGDQRGRVGFG 60
>METX_MYCTU (P0A5J8) Homoserine O-acetyltransferase (EC 2.3.1.31) (Homoserine| O-trans-acetylase) (Homoserine transacetylase) (HTA) Length = 379 Score = 27.3 bits (59), Expect = 9.2 Identities = 10/20 (50%), Positives = 11/20 (55%) Frame = -3 Query: 61 AGEGRSV*GFWDGTGGPDCP 2 AG G G+WDG GP P Sbjct: 70 AGPGHPTPGWWDGVAGPGAP 89
>METX_MYCBO (P0A5J9) Homoserine O-acetyltransferase (EC 2.3.1.31) (Homoserine| O-trans-acetylase) (Homoserine transacetylase) (HTA) Length = 379 Score = 27.3 bits (59), Expect = 9.2 Identities = 10/20 (50%), Positives = 11/20 (55%) Frame = -3 Query: 61 AGEGRSV*GFWDGTGGPDCP 2 AG G G+WDG GP P Sbjct: 70 AGPGHPTPGWWDGVAGPGAP 89
>RL2_ANASP (Q8YPI2) 50S ribosomal protein L2| Length = 287 Score = 27.3 bits (59), Expect = 9.2 Identities = 12/35 (34%), Positives = 20/35 (57%) Frame = +1 Query: 4 GNPALQSHPRNPRRTVPRLLPSPTRQANPRFRGGR 108 G P L + R P++ +L+ R+++ R RGGR Sbjct: 251 GKPTLGAKTRKPKKASSKLIIRRRRKSSKRGRGGR 285 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 44,232,036 Number of Sequences: 219361 Number of extensions: 707396 Number of successful extensions: 2661 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 2504 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2660 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 1402043640 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
