ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl18e06 |
|---|---|
| Clone Library Name | barley_pub |
>gb|M55604.1|WHTUBA1 T.aestivum ubiquitin activating enzyme E1 (UBA1) gene, complete cds Length = 3586 Score = 505 bits (255), Expect = e-140 Identities = 320/343 (93%), Gaps = 9/343 (2%) Strand = Plus / Plus Query: 45 gaccgtccctcgcctgcttccttccccgacgcgacaggcgaatccaaggtttcgcggcgg 104 ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 6 gaccgtcgctcgcctgcttccttcaccgacgcgacaggcgaatccaaggtttcgcggcgg 65 Query: 105 ---------tcgcacgcgctggatctgacgcggcagctcccggcggccgtctactactgc 155 | |||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 66 ttgcggccctagcacgcgctggatctgacgcggcagctcccggcggccgcgtactactgc 125 Query: 156 ctgctcttcgctgcgtcggcggccgtcctcgggctcctcggcggcgtcgcgcgctatatg 215 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 126 ctgctcttcgctgcgtcggcggctgtcctcgggctcctcggcggcgtcgcgcgctatatg 185 Query: 216 cttccccggaagcgggagatcgtcgccggcgaggtcgaggacttgcagaagaaaacccgc 275 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 186 cttccccggaagcgggagatcgtcgccggcgaggtcgaggacttgcagaagaagacccgc 245 Query: 276 gccggggagggggagacggccagggaggaaggagacgcagccatggcacggagggggaac 335 ||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||| Sbjct: 246 gccggggagggggaggtcactagggaggaaggagacgcagccatggcagggagggggaac 305 Query: 336 gagatcgacgaggacctgcacagtcgccagctcgccgtctatg 378 ||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 306 gagatcgacgaggacctgcacagccgccagctcgccgtctatg 348
>gb|M90663.1|WHTE1A Wheat ubiquitin activating enzyme (E1) mRNA, complete cds Length = 3695 Score = 420 bits (212), Expect = e-114 Identities = 259/272 (95%), Gaps = 2/272 (0%) Strand = Plus / Plus Query: 107 gcacgcgctggatctgacgcggcagctcccggcggccgtctactactgcctgctcttcgc 166 ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| Sbjct: 174 gcacgcgctggatctgacgcg-cagctcccggcggccgcgtactactgcctgctcttcgc 232 Query: 167 tgcgtcggcggccgtcctcgggctcctcggcggcgtcgcgcgctatatgcttccccggaa 226 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 233 tgcgtcggcggccgtcctcgggctcctcggcg-cgtcgcgcgctatatgcttccccggaa 291 Query: 227 gcgggagatcgtcgccggcgaggtcgaggacttgcagaagaaaacccgcgccggggaggg 286 |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct: 292 gcgggagatcgtcgccggcgaggtcgaggacttgcagaagaagacccgtgccggggaggg 351 Query: 287 ggagacggccagggaggaaggagacgcagccatggcacggagggggaacgagatcgacga 346 ||| | |||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 352 cgaggccaccagggaggaaggagacgcagccatggctgggagggggaacgagatcgacga 411 Query: 347 ggacctgcacagtcgccagctcgccgtctatg 378 |||||||||||| ||||||||||||||||||| Sbjct: 412 ggacctgcacagccgccagctcgccgtctatg 443 Score = 79.8 bits (40), Expect = 6e-12 Identities = 66/73 (90%), Gaps = 5/73 (6%) Strand = Plus / Plus Query: 23 cccatcccagaaaccctagacggaccgtccctcgcctgctt-ccttccccgacgcgacag 81 |||| |||||||||||||||| |||| ||||||||||| |||||||||||||||||| Sbjct: 8 cccagcccagaaaccctagac----cgtcgctcgcctgctttccttccccgacgcgacag 63 Query: 82 gcgaatccaaggt 94 ||||||||||||| Sbjct: 64 gcgaatccaaggt 76
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 63.9 bits (32), Expect = 3e-07 Identities = 41/44 (93%) Strand = Plus / Minus Query: 335 cgagatcgacgaggacctgcacagtcgccagctcgccgtctatg 378 ||||||||| |||||||| ||||| ||||||||||||||||||| Sbjct: 317138 cgagatcgatgaggaccttcacagccgccagctcgccgtctatg 317095 Score = 52.0 bits (26), Expect = 0.001 Identities = 84/100 (84%), Gaps = 5/100 (5%) Strand = Plus / Minus Query: 184 tcgggctcctcggcggcgtcgcgcgctatatgcttccccggaagcgggag-atcgtcgcc 242 |||| ||||||||||||| | | |||||||||| |||| ||||||||| ||| ||||| Sbjct: 317286 tcggcctcctcggcggcgccctacactatatgcttacccgcaagcgggaggatc-tcgcc 317228 Query: 243 ggcgaggtcg---aggacttgcagaagaaaacccgcgccg 279 |||||||||| | |||||||| ||||| |||||||||| Sbjct: 317227 ggcgaggtcgtccacgacttgcacaagaagacccgcgccg 317188 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 114 ctggatctgacgcggcagctc 134 ||||||||||||||||||||| Sbjct: 317350 ctggatctgacgcggcagctc 317330
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 63.9 bits (32), Expect = 3e-07 Identities = 80/96 (83%) Strand = Plus / Minus Query: 184 tcgggctcctcggcggcgtcgcgcgctatatgcttccccggaagcgggagatcgtcgccg 243 |||| ||||||||||||| | | |||||||||| |||| ||||||||| |||||| Sbjct: 300318 tcggcctcctcggcggcgccctacactatatgcttacccgcaagcgggaggagctcgccg 300259 Query: 244 gcgaggtcgaggacttgcagaagaaaacccgcgccg 279 |||||||| | |||||||| ||||| |||||||||| Sbjct: 300258 gcgaggtccacgacttgcacaagaagacccgcgccg 300223 Score = 63.9 bits (32), Expect = 3e-07 Identities = 41/44 (93%) Strand = Plus / Minus Query: 335 cgagatcgacgaggacctgcacagtcgccagctcgccgtctatg 378 ||||||||| |||||||| ||||| ||||||||||||||||||| Sbjct: 300173 cgagatcgatgaggacctccacagccgccagctcgccgtctatg 300130 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 275 cgccggggagggggagacggc 295 ||||||||||||||||||||| Sbjct: 21637789 cgccggggagggggagacggc 21637809 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 114 ctggatctgacgcggcagctc 134 ||||||||||||||||||||| Sbjct: 300382 ctggatctgacgcggcagctc 300362
>dbj|AK111781.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023083B12, full insert sequence Length = 3724 Score = 63.9 bits (32), Expect = 3e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 335 cgagatcgacgaggacctgcacagtcgccagctcgccgtctatg 378 ||||||||| |||||||| ||||| ||||||||||||||||||| Sbjct: 437 cgagatcgatgaggaccttcacagccgccagctcgccgtctatg 480 Score = 52.0 bits (26), Expect = 0.001 Identities = 84/100 (84%), Gaps = 5/100 (5%) Strand = Plus / Plus Query: 184 tcgggctcctcggcggcgtcgcgcgctatatgcttccccggaagcgggag-atcgtcgcc 242 |||| ||||||||||||| | | |||||||||| |||| ||||||||| ||| ||||| Sbjct: 289 tcggcctcctcggcggcgccctacactatatgcttacccgcaagcgggaggatc-tcgcc 347 Query: 243 ggcgaggtcg---aggacttgcagaagaaaacccgcgccg 279 |||||||||| | |||||||| ||||| |||||||||| Sbjct: 348 ggcgaggtcgtccacgacttgcacaagaagacccgcgccg 387 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 114 ctggatctgacgcggcagctc 134 ||||||||||||||||||||| Sbjct: 225 ctggatctgacgcggcagctc 245
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 63.9 bits (32), Expect = 3e-07 Identities = 80/96 (83%) Strand = Plus / Minus Query: 184 tcgggctcctcggcggcgtcgcgcgctatatgcttccccggaagcgggagatcgtcgccg 243 |||| ||||||||||||| | | |||||||||| |||| ||||||||| |||||| Sbjct: 300318 tcggcctcctcggcggcgccctacactatatgcttacccgcaagcgggaggagctcgccg 300259 Query: 244 gcgaggtcgaggacttgcagaagaaaacccgcgccg 279 |||||||| | |||||||| ||||| |||||||||| Sbjct: 300258 gcgaggtccacgacttgcacaagaagacccgcgccg 300223 Score = 63.9 bits (32), Expect = 3e-07 Identities = 41/44 (93%) Strand = Plus / Minus Query: 335 cgagatcgacgaggacctgcacagtcgccagctcgccgtctatg 378 ||||||||| |||||||| ||||| ||||||||||||||||||| Sbjct: 300173 cgagatcgatgaggacctccacagccgccagctcgccgtctatg 300130 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 275 cgccggggagggggagacggc 295 ||||||||||||||||||||| Sbjct: 21947988 cgccggggagggggagacggc 21948008 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 114 ctggatctgacgcggcagctc 134 ||||||||||||||||||||| Sbjct: 300382 ctggatctgacgcggcagctc 300362
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 63.9 bits (32), Expect = 3e-07 Identities = 41/44 (93%) Strand = Plus / Minus Query: 335 cgagatcgacgaggacctgcacagtcgccagctcgccgtctatg 378 ||||||||| |||||||| ||||| ||||||||||||||||||| Sbjct: 317138 cgagatcgatgaggaccttcacagccgccagctcgccgtctatg 317095 Score = 52.0 bits (26), Expect = 0.001 Identities = 84/100 (84%), Gaps = 5/100 (5%) Strand = Plus / Minus Query: 184 tcgggctcctcggcggcgtcgcgcgctatatgcttccccggaagcgggag-atcgtcgcc 242 |||| ||||||||||||| | | |||||||||| |||| ||||||||| ||| ||||| Sbjct: 317286 tcggcctcctcggcggcgccctacactatatgcttacccgcaagcgggaggatc-tcgcc 317228 Query: 243 ggcgaggtcg---aggacttgcagaagaaaacccgcgccg 279 |||||||||| | |||||||| ||||| |||||||||| Sbjct: 317227 ggcgaggtcgtccacgacttgcacaagaagacccgcgccg 317188 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 114 ctggatctgacgcggcagctc 134 ||||||||||||||||||||| Sbjct: 317350 ctggatctgacgcggcagctc 317330
>emb|BX000501.4|CNS08CDR Oryza sativa chromosome 11, . BAC OSJNBa0032J07 of library OSJNBa from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 160673 Score = 63.9 bits (32), Expect = 3e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 335 cgagatcgacgaggacctgcacagtcgccagctcgccgtctatg 378 ||||||||| |||||||| ||||| ||||||||||||||||||| Sbjct: 4820 cgagatcgatgaggacctccacagccgccagctcgccgtctatg 4863 Score = 63.9 bits (32), Expect = 3e-07 Identities = 80/96 (83%) Strand = Plus / Plus Query: 184 tcgggctcctcggcggcgtcgcgcgctatatgcttccccggaagcgggagatcgtcgccg 243 |||| ||||||||||||| | | |||||||||| |||| ||||||||| |||||| Sbjct: 4675 tcggcctcctcggcggcgccctacactatatgcttacccgcaagcgggaggagctcgccg 4734 Query: 244 gcgaggtcgaggacttgcagaagaaaacccgcgccg 279 |||||||| | |||||||| ||||| |||||||||| Sbjct: 4735 gcgaggtccacgacttgcacaagaagacccgcgccg 4770 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 114 ctggatctgacgcggcagctc 134 ||||||||||||||||||||| Sbjct: 4611 ctggatctgacgcggcagctc 4631
>emb|BX000494.2|CNS08CDK Oryza sativa chromosome 12, . BAC OSJNBa0052H10 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 152222 Score = 63.9 bits (32), Expect = 3e-07 Identities = 41/44 (93%) Strand = Plus / Minus Query: 335 cgagatcgacgaggacctgcacagtcgccagctcgccgtctatg 378 ||||||||| |||||||| ||||| ||||||||||||||||||| Sbjct: 50189 cgagatcgatgaggaccttcacagccgccagctcgccgtctatg 50146 Score = 52.0 bits (26), Expect = 0.001 Identities = 84/100 (84%), Gaps = 5/100 (5%) Strand = Plus / Minus Query: 184 tcgggctcctcggcggcgtcgcgcgctatatgcttccccggaagcgggag-atcgtcgcc 242 |||| ||||||||||||| | | |||||||||| |||| ||||||||| ||| ||||| Sbjct: 50337 tcggcctcctcggcggcgccctacactatatgcttacccgcaagcgggaggatc-tcgcc 50279 Query: 243 ggcgaggtcg---aggacttgcagaagaaaacccgcgccg 279 |||||||||| | |||||||| ||||| |||||||||| Sbjct: 50278 ggcgaggtcgtccacgacttgcacaagaagacccgcgccg 50239 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 114 ctggatctgacgcggcagctc 134 ||||||||||||||||||||| Sbjct: 50401 ctggatctgacgcggcagctc 50381
>emb|BX000497.1|CNS08CDN Oryza sativa chromosome 11, . BAC OSJNBa0010K05 of library OSJNBa from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 164143 Score = 63.9 bits (32), Expect = 3e-07 Identities = 80/96 (83%) Strand = Plus / Minus Query: 184 tcgggctcctcggcggcgtcgcgcgctatatgcttccccggaagcgggagatcgtcgccg 243 |||| ||||||||||||| | | |||||||||| |||| ||||||||| |||||| Sbjct: 7636 tcggcctcctcggcggcgccctacactatatgcttacccgcaagcgggaggagctcgccg 7577 Query: 244 gcgaggtcgaggacttgcagaagaaaacccgcgccg 279 |||||||| | |||||||| ||||| |||||||||| Sbjct: 7576 gcgaggtccacgacttgcacaagaagacccgcgccg 7541 Score = 63.9 bits (32), Expect = 3e-07 Identities = 41/44 (93%) Strand = Plus / Minus Query: 335 cgagatcgacgaggacctgcacagtcgccagctcgccgtctatg 378 ||||||||| |||||||| ||||| ||||||||||||||||||| Sbjct: 7491 cgagatcgatgaggacctccacagccgccagctcgccgtctatg 7448 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 114 ctggatctgacgcggcagctc 134 ||||||||||||||||||||| Sbjct: 7700 ctggatctgacgcggcagctc 7680
>ref|NM_128566.3| Arabidopsis thaliana ATUBA1; ubiquitin activating enzyme AT2G30110 (ATUBA1) mRNA, complete cds Length = 3626 Score = 56.0 bits (28), Expect = 8e-05 Identities = 28/28 (100%) Strand = Plus / Plus Query: 351 ctgcacagtcgccagctcgccgtctatg 378 |||||||||||||||||||||||||||| Sbjct: 352 ctgcacagtcgccagctcgccgtctatg 379
>gb|AC004165.3| Arabidopsis thaliana chromosome 2 clone T27E13 map m283, complete sequence Length = 83796 Score = 56.0 bits (28), Expect = 8e-05 Identities = 28/28 (100%) Strand = Plus / Plus Query: 351 ctgcacagtcgccagctcgccgtctatg 378 |||||||||||||||||||||||||||| Sbjct: 48499 ctgcacagtcgccagctcgccgtctatg 48526
>gb|AY090248.1| Arabidopsis thaliana At2g30110/T27E13.15 mRNA, complete cds Length = 3561 Score = 56.0 bits (28), Expect = 8e-05 Identities = 28/28 (100%) Strand = Plus / Plus Query: 351 ctgcacagtcgccagctcgccgtctatg 378 |||||||||||||||||||||||||||| Sbjct: 313 ctgcacagtcgccagctcgccgtctatg 340
>gb|BT006363.1| Arabidopsis thaliana At2g30110/T27E13.15 gene, complete cds Length = 3243 Score = 56.0 bits (28), Expect = 8e-05 Identities = 28/28 (100%) Strand = Plus / Plus Query: 351 ctgcacagtcgccagctcgccgtctatg 378 |||||||||||||||||||||||||||| Sbjct: 229 ctgcacagtcgccagctcgccgtctatg 256
>gb|U80808.1|ATU80808 Arabidopsis thaliana ubiquitin activating enzyme (UBA1) gene, complete cds Length = 3346 Score = 56.0 bits (28), Expect = 8e-05 Identities = 28/28 (100%) Strand = Plus / Plus Query: 351 ctgcacagtcgccagctcgccgtctatg 378 |||||||||||||||||||||||||||| Sbjct: 326 ctgcacagtcgccagctcgccgtctatg 353
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 52.0 bits (26), Expect = 0.001 Identities = 35/38 (92%) Strand = Plus / Minus Query: 336 gagatcgacgaggacctgcacagtcgccagctcgccgt 373 ||||||||||||||||||||||| | ||||||||||| Sbjct: 10276947 gagatcgacgaggacctgcacagcaggcagctcgccgt 10276910
>gb|AC137072.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0045E22, from chromosome 3, complete sequence Length = 160920 Score = 52.0 bits (26), Expect = 0.001 Identities = 35/38 (92%) Strand = Plus / Minus Query: 336 gagatcgacgaggacctgcacagtcgccagctcgccgt 373 ||||||||||||||||||||||| | ||||||||||| Sbjct: 138360 gagatcgacgaggacctgcacagcaggcagctcgccgt 138323
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 52.0 bits (26), Expect = 0.001 Identities = 35/38 (92%) Strand = Plus / Minus Query: 336 gagatcgacgaggacctgcacagtcgccagctcgccgt 373 ||||||||||||||||||||||| | ||||||||||| Sbjct: 10275048 gagatcgacgaggacctgcacagcaggcagctcgccgt 10275011
>dbj|AK120544.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013129J22, full insert sequence Length = 3682 Score = 52.0 bits (26), Expect = 0.001 Identities = 35/38 (92%) Strand = Plus / Plus Query: 336 gagatcgacgaggacctgcacagtcgccagctcgccgt 373 ||||||||||||||||||||||| | ||||||||||| Sbjct: 370 gagatcgacgaggacctgcacagcaggcagctcgccgt 407
>ref|NM_185567.2| Oryza sativa (japonica cultivar-group), mRNA Length = 3522 Score = 50.1 bits (25), Expect = 0.005 Identities = 37/41 (90%) Strand = Plus / Plus Query: 336 gagatcgacgaggacctgcacagtcgccagctcgccgtcta 376 ||||| ||||||||||||||||| | |||||||||||||| Sbjct: 331 gagattgacgaggacctgcacagcaggcagctcgccgtcta 371
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 50.1 bits (25), Expect = 0.005 Identities = 37/41 (90%) Strand = Plus / Plus Query: 336 gagatcgacgaggacctgcacagtcgccagctcgccgtcta 376 ||||| ||||||||||||||||| | |||||||||||||| Sbjct: 29425633 gagattgacgaggacctgcacagcaggcagctcgccgtcta 29425673
>dbj|AK074007.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033076H04, full insert sequence Length = 3522 Score = 50.1 bits (25), Expect = 0.005 Identities = 37/41 (90%) Strand = Plus / Plus Query: 336 gagatcgacgaggacctgcacagtcgccagctcgccgtcta 376 ||||| ||||||||||||||||| | |||||||||||||| Sbjct: 331 gagattgacgaggacctgcacagcaggcagctcgccgtcta 371
>dbj|AP004333.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0034A04 Length = 151263 Score = 50.1 bits (25), Expect = 0.005 Identities = 37/41 (90%) Strand = Plus / Plus Query: 336 gagatcgacgaggacctgcacagtcgccagctcgccgtcta 376 ||||| ||||||||||||||||| | |||||||||||||| Sbjct: 88555 gagattgacgaggacctgcacagcaggcagctcgccgtcta 88595
>gb|AY597048.1| Oncorhynchus mykiss macrophage myristoylated alanine-rich C kinase-like protein mRNA, complete cds Length = 1307 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Minus Query: 182 cctcgggctcctcggcggcgtc 203 |||||||||||||||||||||| Sbjct: 389 cctcgggctcctcggcggcgtc 368
>gb|AC154402.2| Mus musculus BAC clone RP24-235N24 from chromosome 13, complete sequence Length = 145213 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Plus Query: 13 gccctccagtcccatcccagaa 34 |||||||||||||||||||||| Sbjct: 106543 gccctccagtcccatcccagaa 106564
>emb|AJ278573.1|SNA278573 Streptomyces natalensis pimaricin biosynthetic gene cluster Length = 84985 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Plus Query: 179 cgtcctcgggctcctcggcggc 200 |||||||||||||||||||||| Sbjct: 8332 cgtcctcgggctcctcggcggc 8353
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 44.1 bits (22), Expect = 0.32 Identities = 25/26 (96%) Strand = Plus / Minus Query: 178 ccgtcctcgggctcctcggcggcgtc 203 |||||||||||| ||||||||||||| Sbjct: 4787528 ccgtcctcgggcgcctcggcggcgtc 4787503
>emb|CT009762.8| Mouse DNA sequence from clone RP23-211O9 on chromosome 13, complete sequence Length = 229171 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Minus Query: 13 gccctccagtcccatcccagaa 34 |||||||||||||||||||||| Sbjct: 58391 gccctccagtcccatcccagaa 58370
>gb|M90664.1|WHTE1B Wheat ubiquitin activating enzyme (E1) mRNA, complete cds Length = 3588 Score = 44.1 bits (22), Expect = 0.32 Identities = 34/38 (89%) Strand = Plus / Plus Query: 336 gagatcgacgaggacctgcacagtcgccagctcgccgt 373 ||||||||||||||||| ||||| | ||||||||||| Sbjct: 318 gagatcgacgaggacctccacagcaggcagctcgccgt 355
>dbj|AB028740.1| Mus musculus drba gene for drebrin A, partial cds Length = 20387 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Minus Query: 13 gccctccagtcccatcccagaa 34 |||||||||||||||||||||| Sbjct: 20317 gccctccagtcccatcccagaa 20296
>gb|AC146334.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone B1356F10, complete sequence Length = 170681 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 275 cgccggggagggggagacggc 295 ||||||||||||||||||||| Sbjct: 161308 cgccggggagggggagacggc 161328
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 237 gtcgccggcgaggtcgaggac 257 ||||||||||||||||||||| Sbjct: 4504569 gtcgccggcgaggtcgaggac 4504549 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 230 ggagatcgtcgccggcgaggtcgag 254 |||||||||||||| |||||||||| Sbjct: 404648 ggagatcgtcgccgccgaggtcgag 404672
>gb|AF202898.1|AF202898 Streptomyces coelicolor A3(2) type I polyketide synthase gene, partial cds Length = 2203 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 177 gccgtcctcgggctcctcggc 197 ||||||||||||||||||||| Sbjct: 1431 gccgtcctcgggctcctcggc 1411
>dbj|AK058631.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-C10, full insert sequence Length = 1357 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 275 cgccggggagggggagacggc 295 ||||||||||||||||||||| Sbjct: 407 cgccggggagggggagacggc 427
>gb|DQ333391.1| Cervid herpesvirus 2 glycoprotein C gene, complete cds Length = 1522 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 185 cgggctcctcggcggcgtcgcgcgc 209 |||||||||||||| |||||||||| Sbjct: 1188 cgggctcctcggcgccgtcgcgcgc 1164
>gb|AC102620.11| Mus musculus chromosome 5, clone RP23-429E19, complete sequence Length = 208435 Score = 42.1 bits (21), Expect = 1.3 Identities = 30/33 (90%) Strand = Plus / Plus Query: 279 ggggagggggagacggccagggaggaaggagac 311 ||||||||||||| || ||||||| |||||||| Sbjct: 86359 ggggagggggagaggggcagggagaaaggagac 86391
>ref|XM_475618.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1335 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 234 atcgtcgccggcgaggtcga 253 |||||||||||||||||||| Sbjct: 48 atcgtcgccggcgaggtcga 67
>ref|XM_468450.1| Oryza sativa (japonica cultivar-group), mRNA Length = 390 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 226 agcgggagatcgtcgccggcgagg 249 |||||||| ||||||||||||||| Sbjct: 248 agcgggaggtcgtcgccggcgagg 225
>ref|XM_507059.1| PREDICTED Oryza sativa (japonica cultivar-group), P0474F11.28-1 mRNA Length = 2304 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 226 agcgggagatcgtcgccggcgagg 249 |||||||| ||||||||||||||| Sbjct: 79 agcgggaggtcgtcgccggcgagg 102
>ref|XM_468451.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2049 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 226 agcgggagatcgtcgccggcgagg 249 |||||||| ||||||||||||||| Sbjct: 112 agcgggaggtcgtcgccggcgagg 135
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 89 caaggtttcgcggcggtcgc 108 |||||||||||||||||||| Sbjct: 1950645 caaggtttcgcggcggtcgc 1950626
>gb|AY657515.1| Synthetic construct Peudomonas aeruginosa clone FLH040573.01F PA1340 gene, partial cds Length = 669 Score = 40.1 bits (20), Expect = 5.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 180 gtcctcgggctcctcggcggcgtcgcgc 207 |||||||| |||||||||||||||||| Sbjct: 76 gtcctcggcgtcctcggcggcgtcgcgc 103
>ref|NM_020964.2| Homo sapiens KIAA1632 (KIAA1632), mRNA Length = 12715 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 tctactactgcctgctcttc 164 |||||||||||||||||||| Sbjct: 11976 tctactactgcctgctcttc 11995
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 89 caaggtttcgcggcggtcgc 108 |||||||||||||||||||| Sbjct: 1480472 caaggtttcgcggcggtcgc 1480491
>emb|CR936259.1| Natronomonas pharaonis DSM 2160 plasmid PL23 complete genome Length = 23486 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 331 ggaacgagatcgacgaggac 350 |||||||||||||||||||| Sbjct: 17823 ggaacgagatcgacgaggac 17804
>ref|XM_749626.1| Aspergillus fumigatus Af293 AP-1 adaptor complex subunit beta (Afu3g08970) partial mRNA Length = 2241 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 256 acttgcagaagaaaacccgc 275 |||||||||||||||||||| Sbjct: 985 acttgcagaagaaaacccgc 966
>gb|DQ352994.1| Apomyrma stygia voucher RA0120 abdominal-A (AbdA) gene, partial cds Length = 531 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 187 ggctcctcggcggcgtcgcgcgct 210 |||||||||||||||||| ||||| Sbjct: 358 ggctcctcggcggcgtcgagcgct 381
>gb|DQ352869.1| Pachycondyla stigma voucher RA0243 abdominal-A (AbdA) gene, partial cds Length = 648 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 187 ggctcctcggcggcgtcgcgcgct 210 |||||||||||||||||| ||||| Sbjct: 361 ggctcctcggcggcgtcgagcgct 384
>gb|AC087685.9| Homo sapiens chromosome 18, clone RP11-618K16, complete sequence Length = 155807 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 tctactactgcctgctcttc 164 |||||||||||||||||||| Sbjct: 39017 tctactactgcctgctcttc 39036
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 89 caaggtttcgcggcggtcgc 108 |||||||||||||||||||| Sbjct: 1367581 caaggtttcgcggcggtcgc 1367600
>gb|AC093502.2| Drosophila melanogaster 3L BAC RP98-48C4 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 166249 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 237 gtcgccggcgaggtcgagga 256 |||||||||||||||||||| Sbjct: 85552 gtcgccggcgaggtcgagga 85571
>gb|AC010031.8| Drosophila melanogaster 3L BAC RP98-2M20 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 173509 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 237 gtcgccggcgaggtcgagga 256 |||||||||||||||||||| Sbjct: 17561 gtcgccggcgaggtcgagga 17580
>gb|AC104703.3| Drosophila melanogaster 3L BAC RP98-35M1 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 185404 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 237 gtcgccggcgaggtcgagga 256 |||||||||||||||||||| Sbjct: 134007 gtcgccggcgaggtcgagga 134026
>dbj|AK094080.1| Homo sapiens cDNA FLJ36761 fis, clone UTERU2018884 Length = 3017 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 tctactactgcctgctcttc 164 |||||||||||||||||||| Sbjct: 2296 tctactactgcctgctcttc 2315
>gb|AC090355.9| Homo sapiens chromosome 18, clone RP11-745C22, complete sequence Length = 186783 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 tctactactgcctgctcttc 164 |||||||||||||||||||| Sbjct: 17512 tctactactgcctgctcttc 17493
>ref|NM_176328.1| Drosophila melanogaster CG17364-RB, transcript variant B (CG17364), mRNA Length = 2631 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 237 gtcgccggcgaggtcgagga 256 |||||||||||||||||||| Sbjct: 1338 gtcgccggcgaggtcgagga 1357
>ref|NM_140417.2| Drosophila melanogaster CG17364-RA, transcript variant A (CG17364), mRNA Length = 2415 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 237 gtcgccggcgaggtcgagga 256 |||||||||||||||||||| Sbjct: 1338 gtcgccggcgaggtcgagga 1357
>gb|AY094951.1| Drosophila melanogaster RH68811 full insert cDNA Length = 2014 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 237 gtcgccggcgaggtcgagga 256 |||||||||||||||||||| Sbjct: 708 gtcgccggcgaggtcgagga 727
>gb|AC091940.3| Homo sapiens chromosome 5 clone RP11-331K21, complete sequence Length = 143702 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 295 ccagggaggaaggagacgcagcca 318 |||||||||||||||| ||||||| Sbjct: 3450 ccagggaggaaggagaggcagcca 3473
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 177 gccgtcctcgggctcctcgg 196 |||||||||||||||||||| Sbjct: 474763 gccgtcctcgggctcctcgg 474744
>gb|AC011364.4| Homo sapiens chromosome 5 clone CTC-529P8, complete sequence Length = 122394 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 295 ccagggaggaaggagacgcagcca 318 |||||||||||||||| ||||||| Sbjct: 103027 ccagggaggaaggagaggcagcca 103050
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 234 atcgtcgccggcgaggtcga 253 |||||||||||||||||||| Sbjct: 3364388 atcgtcgccggcgaggtcga 3364407
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 226 agcgggagatcgtcgccggcgagg 249 |||||||| ||||||||||||||| Sbjct: 35299137 agcgggaggtcgtcgccggcgagg 35299160
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome Length = 3304561 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 233 gatcgtcgccggcgaggtcg 252 |||||||||||||||||||| Sbjct: 1961521 gatcgtcgccggcgaggtcg 1961502
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 41 gacggaccgtccctcgcctg 60 |||||||||||||||||||| Sbjct: 86184 gacggaccgtccctcgcctg 86203
>gb|AE004563.1| Pseudomonas aeruginosa PAO1, section 124 of 529 of the complete genome Length = 9937 Score = 40.1 bits (20), Expect = 5.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 180 gtcctcgggctcctcggcggcgtcgcgc 207 |||||||| |||||||||||||||||| Sbjct: 7753 gtcctcggcgtcctcggcggcgtcgcgc 7726
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 126 cggcagctcccggcggccgt 145 |||||||||||||||||||| Sbjct: 2129561 cggcagctcccggcggccgt 2129542
>dbj|AP004020.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1119_A01 Length = 108727 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 226 agcgggagatcgtcgccggcgagg 249 |||||||| ||||||||||||||| Sbjct: 49471 agcgggaggtcgtcgccggcgagg 49494
>dbj|AP004878.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0474F11 Length = 139544 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 226 agcgggagatcgtcgccggcgagg 249 |||||||| ||||||||||||||| Sbjct: 111187 agcgggaggtcgtcgccggcgagg 111210
>dbj|AK101218.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033031C13, full insert sequence Length = 1728 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 234 atcgtcgccggcgaggtcga 253 |||||||||||||||||||| Sbjct: 116 atcgtcgccggcgaggtcga 135
>dbj|AK071390.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023093H07, full insert sequence Length = 2304 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 226 agcgggagatcgtcgccggcgagg 249 |||||||| ||||||||||||||| Sbjct: 79 agcgggaggtcgtcgccggcgagg 102
>dbj|AK062205.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-H02, full insert sequence Length = 2049 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 226 agcgggagatcgtcgccggcgagg 249 |||||||| ||||||||||||||| Sbjct: 112 agcgggaggtcgtcgccggcgagg 135
>dbj|AK060561.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-022-G04, full insert sequence Length = 1730 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 234 atcgtcgccggcgaggtcga 253 |||||||||||||||||||| Sbjct: 115 atcgtcgccggcgaggtcga 134
>gb|AE003536.4| Drosophila melanogaster chromosome 3L, section 49 of 83 of the complete sequence Length = 350428 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 237 gtcgccggcgaggtcgagga 256 |||||||||||||||||||| Sbjct: 242559 gtcgccggcgaggtcgagga 242540
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 183 ctcgggctcctcggcggcgtcgcg 206 |||||||| ||||||||||||||| Sbjct: 2637365 ctcgggctgctcggcggcgtcgcg 2637388
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 168 gcgtcggcggccgtcctcgggctc 191 |||||||||||| ||||||||||| Sbjct: 1756399 gcgtcggcggccatcctcgggctc 1756422
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome Length = 2595221 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 331 ggaacgagatcgacgaggac 350 |||||||||||||||||||| Sbjct: 1596793 ggaacgagatcgacgaggac 1596774
>gb|AC087425.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0676G05, complete sequence Length = 167317 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 234 atcgtcgccggcgaggtcga 253 |||||||||||||||||||| Sbjct: 158212 atcgtcgccggcgaggtcga 158231
>dbj|D45381.1| Carassius auratus mRNA for AMPA-type glutamate receptor, partial cds Length = 2703 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 177 gccgtcctcgggctcctcgg 196 |||||||||||||||||||| Sbjct: 1731 gccgtcctcgggctcctcgg 1712
>gb|U12018.1|CAU12018 Carassius auratus glutamate receptor 4 (glur4) mRNA, partial cds Length = 3613 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 177 gccgtcctcgggctcctcgg 196 |||||||||||||||||||| Sbjct: 1731 gccgtcctcgggctcctcgg 1712 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,665,718 Number of Sequences: 3902068 Number of extensions: 2665718 Number of successful extensions: 60077 Number of sequences better than 10.0: 80 Number of HSP's better than 10.0 without gapping: 82 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 57780 Number of HSP's gapped (non-prelim): 2283 length of query: 378 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 356 effective length of database: 17,147,199,772 effective search space: 6104403118832 effective search space used: 6104403118832 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
