>DDB1A_ARATH (Q9M0V3) DNA damage binding protein 1a (UV-damaged DNA-binding|
           protein 1a) (DDB1a)
          Length = 1088

 Score =  180 bits (457), Expect = 7e-46
 Identities = 84/91 (92%), Positives = 88/91 (96%)
 Frame = +2

Query: 80  MSTWNYVVTAHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTPQGLQPMLDVPIYG 259
           MS+WNYVVTAHKPTSV+HSCVGNFT P +LNLIVAKCTRIEIHLLTPQGLQPMLDVPIYG
Sbjct: 1   MSSWNYVVTAHKPTSVTHSCVGNFTSPQELNLIVAKCTRIEIHLLTPQGLQPMLDVPIYG 60

Query: 260 RIATIELFRPHNEAQDFLFIATERYKFCVLQ 352
           RIAT+ELFRPH EAQDFLFIATERYKFCVLQ
Sbjct: 61  RIATLELFRPHGEAQDFLFIATERYKFCVLQ 91

>DDB1_LYCES (Q6QNU4) DNA damage binding protein 1 (UV-damaged DNA-binding|
           protein 1) (High pigmentation protein 1)
          Length = 1090

 Score =  177 bits (448), Expect = 7e-45
 Identities = 81/91 (89%), Positives = 86/91 (94%)
 Frame = +2

Query: 80  MSTWNYVVTAHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTPQGLQPMLDVPIYG 259
           MS WNYVVTAHKPT+V+HSCVGNFTGP +LNLI+AKCTRIEIHLLTPQGLQPMLDVPIYG
Sbjct: 1   MSVWNYVVTAHKPTNVTHSCVGNFTGPQELNLIIAKCTRIEIHLLTPQGLQPMLDVPIYG 60

Query: 260 RIATIELFRPHNEAQDFLFIATERYKFCVLQ 352
           RIAT+ELFRPH E QD LFIATERYKFCVLQ
Sbjct: 61  RIATLELFRPHGETQDLLFIATERYKFCVLQ 91

>DDB1_LYCCS (Q6E7D1) DNA damage binding protein 1 (UV-damaged DNA-binding|
           protein 1)
          Length = 1095

 Score =  171 bits (432), Expect = 5e-43
 Identities = 81/96 (84%), Positives = 86/96 (89%), Gaps = 5/96 (5%)
 Frame = +2

Query: 80  MSTWNYVVTAHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTPQG-----LQPMLD 244
           MS WNYVVTAHKPT+V+HSCVGNFTGP +LNLI+AKCTRIEIHLLTPQG     LQPMLD
Sbjct: 1   MSVWNYVVTAHKPTNVTHSCVGNFTGPQELNLIIAKCTRIEIHLLTPQGLQCICLQPMLD 60

Query: 245 VPIYGRIATIELFRPHNEAQDFLFIATERYKFCVLQ 352
           VPIYGRIAT+ELFRPH E QD LFIATERYKFCVLQ
Sbjct: 61  VPIYGRIATLELFRPHGETQDLLFIATERYKFCVLQ 96

>DDB1B_ARATH (O49552) DNA damage binding protein 1b (UV-damaged DNA-binding|
           protein 1b) (DDB1b)
          Length = 1088

 Score =  162 bits (409), Expect = 2e-40
 Identities = 75/91 (82%), Positives = 82/91 (90%)
 Frame = +2

Query: 80  MSTWNYVVTAHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTPQGLQPMLDVPIYG 259
           MS WNY VTA KPT V+HSCVGNFT P +LNLIVAK TRIEIHLL+PQGLQ +LDVP+YG
Sbjct: 1   MSVWNYAVTAQKPTCVTHSCVGNFTSPQELNLIVAKSTRIEIHLLSPQGLQTILDVPLYG 60

Query: 260 RIATIELFRPHNEAQDFLFIATERYKFCVLQ 352
           RIAT+ELFRPH EAQDFLF+ATERYKFCVLQ
Sbjct: 61  RIATMELFRPHGEAQDFLFVATERYKFCVLQ 91

>DDB1_HUMAN (Q16531) DNA damage-binding protein 1 (Damage-specific DNA-binding|
           protein 1) (UV-damaged DNA-binding factor) (DDB p127
           subunit) (DDBa) (UV-damaged DNA-binding protein 1)
           (UV-DDB 1) (Xeroderma pigmentosum group E-complementing
           protein) (XPCe)
          Length = 1140

 Score =  101 bits (252), Expect = 4e-22
 Identities = 45/89 (50%), Positives = 68/89 (76%)
 Frame = +2

Query: 86  TWNYVVTAHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTPQGLQPMLDVPIYGRI 265
           ++NYVVTA KPT+V+    G+FT    LNL++AK TR+EI+++T +GL+P+ +V +YG+I
Sbjct: 2   SYNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKI 61

Query: 266 ATIELFRPHNEAQDFLFIATERYKFCVLQ 352
           A +ELFRP  E++D LFI T +Y  C+L+
Sbjct: 62  AVMELFRPKGESKDLLFILTAKYNACILE 90

>DDB1_CERAE (P33194) DNA damage-binding protein 1 (Damage-specific DNA-binding|
           protein 1) (DDB p127 subunit) (DDBa) (UV-damaged
           DNA-binding protein 1) (UV-DDB 1)
          Length = 1140

 Score = 99.4 bits (246), Expect = 2e-21
 Identities = 44/89 (49%), Positives = 67/89 (75%)
 Frame = +2

Query: 86  TWNYVVTAHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTPQGLQPMLDVPIYGRI 265
           ++NYVVTA KPT+V+     +FT    LNL++AK TR+EI+++T +GL+P+ +V +YG+I
Sbjct: 2   SYNYVVTAQKPTAVNGCVTAHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKI 61

Query: 266 ATIELFRPHNEAQDFLFIATERYKFCVLQ 352
           A +ELFRP  E++D LFI T +Y  C+L+
Sbjct: 62  AVMELFRPKGESKDLLFILTAKYNACILE 90

>DDB1_SCHPO (O13807) DNA damage-binding protein 1 (Damage-specific DNA-binding|
           protein 1)
          Length = 1072

 Score = 47.4 bits (111), Expect = 9e-06
 Identities = 22/85 (25%), Positives = 43/85 (50%)
 Frame = +2

Query: 95  YVVTAHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTPQGLQPMLDVPIYGRIATI 274
           YV   HKP+S+ ++    F      N+IVAK   +E++      L  +    I+ +I  +
Sbjct: 3   YVTYLHKPSSIRNAVFCKFVNASSWNVIVAKVNCLEVYSYENNRLCLITSANIFAKIVNV 62

Query: 275 ELFRPHNEAQDFLFIATERYKFCVL 349
           + F+P +   D + +AT+ +++  L
Sbjct: 63  KAFKPVSSPTDHIIVATDSFRYFTL 87

>RSE1_ASPFU (Q4WLI5) Pre-mRNA-splicing factor rse1|
          Length = 1225

 Score = 45.1 bits (105), Expect = 4e-05
 Identities = 21/88 (23%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
 Frame = +2

Query: 95  YVVTAHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTP-QG-LQPMLDVPIYGRIA 268
           Y +T   PT+++ + +G F G  +  ++ A  +++ IH   P QG + P+    ++G I 
Sbjct: 10  YSLTIQPPTAITQAILGQFAGTKEQQIVTASGSKLTIHRPDPTQGKITPIYSQDVFGIIR 69

Query: 269 TIELFRPHNEAQDFLFIATERYKFCVLQ 352
           T+  FR    ++D++ I ++  +  +++
Sbjct: 70  TLAAFRLAGSSKDYIIIGSDSGRITIIE 97

>RSE1_EMENI (Q5B1X8) Pre-mRNA-splicing factor rse1|
          Length = 1226

 Score = 42.7 bits (99), Expect = 2e-04
 Identities = 21/88 (23%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
 Frame = +2

Query: 95  YVVTAHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTP-QG-LQPMLDVPIYGRIA 268
           Y +T   PT+++ + +G F G  +  ++ A  +++ IH   P QG + P+    ++G I 
Sbjct: 10  YSLTIQPPTAITQAILGQFAGTKEQQIVTASGSKLTIHRPDPTQGKVIPLYTQDVFGIIR 69

Query: 269 TIELFRPHNEAQDFLFIATERYKFCVLQ 352
           T+  FR     +D++ I ++  +  +++
Sbjct: 70  TLAAFRLAGSNKDYIIIGSDSGRITIIE 97

>RSE1_NEUCR (Q7RYR4) Pre-mRNA-splicing factor rse-1|
          Length = 1271

 Score = 40.0 bits (92), Expect = 0.001
 Identities = 22/88 (25%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
 Frame = +2

Query: 95  YVVTAHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTP-QG-LQPMLDVPIYGRIA 268
           Y +T   PT+V+ + +G F+G  +  ++ A  +R+ +    P QG +  +L   I+G + 
Sbjct: 10  YSLTIQPPTAVTQALLGQFSGTKEQQILTASGSRLTLLQPDPRQGKVNTLLSHDIFGIVR 69

Query: 269 TIELFRPHNEAQDFLFIATERYKFCVLQ 352
            I  FR     +D++ +AT+  +  +++
Sbjct: 70  AIASFRLAGSHKDYIILATDSGRITIIE 97

>RSE1_MAGGR (Q52E49) Pre-mRNA-splicing factor RSE1|
          Length = 1229

 Score = 40.0 bits (92), Expect = 0.001
 Identities = 19/88 (21%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
 Frame = +2

Query: 95  YVVTAHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTP-QG-LQPMLDVPIYGRIA 268
           Y ++   P++++ + +G F+G  +  ++ A  +R+ ++   P QG + P++   ++G I 
Sbjct: 10  YSLSIQPPSTITRAILGQFSGTKEQQIVAASGSRLTLYRPDPTQGKVVPLMSHDVFGIIR 69

Query: 269 TIELFRPHNEAQDFLFIATERYKFCVLQ 352
            +  FR    ++D+L IA++  +  +++
Sbjct: 70  DLASFRLAGSSKDYLIIASDSGRITIVE 97

>RSE1_USTMA (Q4PGM6) Pre-mRNA-splicing factor RSE1|
          Length = 1221

 Score = 38.9 bits (89), Expect = 0.003
 Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 4/90 (4%)
 Frame = +2

Query: 95  YVVTAHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTPQGLQPMLDVPI----YGR 262
           Y +T     SV+ + VG F+G  Q  +IVAK +R+E  LL P      +D  +    +G 
Sbjct: 7   YNLTLQASGSVNATVVGQFSGTRQQEIIVAKGSRLE--LLRPDTQTGKVDTVLSHDAFGV 64

Query: 263 IATIELFRPHNEAQDFLFIATERYKFCVLQ 352
           I ++  FR    ++D++ + ++  +  +L+
Sbjct: 65  IRSLAAFRLTGGSKDYVIVGSDSGRIVILE 94

>RSE1_CRYNE (Q5KP25) Pre-mRNA-splicing factor RSE1|
          Length = 1217

 Score = 33.9 bits (76), Expect = 0.10
 Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
 Frame = +2

Query: 101 VTAHKPTSVSHSCVGNFTG-PHQLNLIVAKCTRIEIHLL--TPQGLQPMLDVPIYGRIAT 271
           +T   PT+VS + VG+F+G   Q  L V   T++EI  L  T   L  ++    +G I  
Sbjct: 6   LTLSSPTNVSTAVVGSFSGSKSQEILCVRGGTKLEIFKLNATTGQLDTIVSTEAFGTIRN 65

Query: 272 IELFRPHNEAQDFLFIATERYKFCVLQ 352
           I  FR     +D++   ++  +  +L+
Sbjct: 66  IAGFRLAGMTKDYILATSDSGRLSILE 92

>TARA_HUMAN (Q9H2D6) TRIO and F-actin-binding protein (Protein Tara)|
            (Trio-associated repeat on actin)
          Length = 2365

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = -2

Query: 349  QDAELVPLRGNEEEVLGLIVRAEELDRRDPPIYGH--VQHRLEALRRE 212
            Q+ E +PLR N+   L  ++     +RR PP  GH  ++  ++ALR +
Sbjct: 2031 QELEKLPLRENKRVPLTALLNQSRGERRGPPSDGHEALEKEVQALRAQ 2078

>RIK1_SCHPO (Q10426) Silencing protein rik1|
          Length = 1040

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = +2

Query: 173 LIVAKCTRIEIHLLTP-QGLQPMLDVPIYGRIATIELFRPHNEAQDFLFI 319
           L++ +  +I I+L +   GLQ    +P++  +  I  +RP    +D+LF+
Sbjct: 28  LVLLQALKINIYLCSEVHGLQFFTSIPLFSTVKHIRPYRPPGLDRDYLFV 77

>CENG1_RAT (Q8CGU4) Centaurin-gamma 1 (ARF-GAP with GTP-binding protein-like,|
            ankyrin repeat and pleckstrin homology domains 2)
            (AGAP-2) (Phosphatidylinositol-3-kinase enhancer) (PIKE)
          Length = 1186

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +3

Query: 246  CPYMGGSRRSSSSALTMRPRTSSSLPRRGTSSAS 347
            CP  GGS  ++ SA T    T++  PRR +S+AS
Sbjct: 1142 CPGEGGSTATTPSAATTPSITATPSPRRRSSAAS 1175

>CENG1_MOUSE (Q3UHD9) Centaurin-gamma 1 (ARF-GAP with GTP-binding protein-like,|
            ankyrin repeat and pleckstrin homology domains 2)
            (AGAP-2) (Phosphatidylinositol-3-kinase enhancer) (PIKE)
          Length = 1186

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +3

Query: 246  CPYMGGSRRSSSSALTMRPRTSSSLPRRGTSSAS 347
            CP  GGS  ++ SA T    T++  PRR +S+AS
Sbjct: 1142 CPGEGGSTATTPSAATTPSITATPSPRRRSSAAS 1175

>CENG1_HUMAN (Q99490) Centaurin-gamma 1 (ARF-GAP with GTP-binding protein-like,|
            ankyrin repeat and pleckstrin homology domains 2)
            (AGAP-2) (Phosphatidylinositol-3-kinase enhancer) (PIKE)
            (GTP-binding and GTPase activating protein 2) (GGAP2)
          Length = 1192

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +3

Query: 246  CPYMGGSRRSSSSALTMRPRTSSSLPRRGTSSAS 347
            CP  GGS  ++ SA T    T++  PRR +S+AS
Sbjct: 1148 CPGEGGSAATTPSAATTPSITATPSPRRRSSAAS 1181

>CLPB_CHLPN (Q7AJA9) Chaperone clpB|
          Length = 866

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
 Frame = -2

Query: 334 VPLRGNEEEVLGLIVRAEELDRRDPPIYGH----VQHRLEALRREEVDLDAG 191
           +P+   E E+  LIV+ E + R   P Y      +Q  ++ALR E   L  G
Sbjct: 409 LPIDEKERELAALIVKQEAIKREQSPSYQEEADAMQKSIDALREELASLRLG 460

>HAK1_DEBOC (P50505) High affinity potassium transporter|
          Length = 821

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 159 GPVKLPTQEWLTLVGLCAVTT*F 91
           G V +P   WL ++G+CA T  F
Sbjct: 433 GKVYIPAINWLLMIGVCATTAGF 455

>PKHB1_RAT (Q9WU68) Pleckstrin homology domain-containing family B member 1|
           (Evectin-1)
          Length = 223

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 15/52 (28%)
 Frame = -3

Query: 264 ILPYMGTSSIGWRPCGVRRWISMRV---------------HFATMRLSWWGP 154
           + P +  +S+ W+PC V R I +RV               H AT   S++GP
Sbjct: 125 VCPKVRCTSLSWKPCKVERRIWVRVYSPYQDYYEVVPPNAHEATYVRSYYGP 176

>Y124_METJA (Q57588) Hypothetical protein MJ0124|
          Length = 1075

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 295 IVRAEELDRRDPPIYGHVQHRLEALRRE 212
           I++   LD++  PIY  +  RLE LRR+
Sbjct: 912 ILKNSILDKQHDPIYKEILERLERLRRD 939


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.316    0.137    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,590,254
Number of Sequences: 219361
Number of extensions: 604302
Number of successful extensions: 2566
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 2500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2563
length of database: 80,573,946
effective HSP length: 93
effective length of database: 60,173,373
effective search space used: 1444160952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)