ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl18d09 |
|---|---|
| Clone Library Name | barley_pub |
>SENP2_RAT (Q9EQE1) Sentrin-specific protease 2 (EC 3.4.22.-)| (Sentrin/SUMO-specific protease SENP2) (Axin-associating molecule) (Axam) Length = 588 Score = 30.4 bits (67), Expect = 1.1 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%) Frame = +3 Query: 42 FALPAVALDRSPA-RTASQPSPPAVVPWRPHRWAGTEMGTGRGGSSRVASRP 194 F L + +R P+ R S+ +P + +PW+P TEM + GG A RP Sbjct: 152 FTLKSEGYNRRPSGRRHSKSNPESSLPWKPQEQGVTEMISEEGGKG--ARRP 201
>IF2_GLOVI (Q7NH85) Translation initiation factor IF-2| Length = 925 Score = 29.6 bits (65), Expect = 1.9 Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 6/48 (12%) Frame = +3 Query: 45 ALPAVALDRSPARTASQPS------PPAVVPWRPHRWAGTEMGTGRGG 170 A P A +P TA QPS PPA P RP + G + RGG Sbjct: 227 AKPTPAPAPAPRPTAEQPSEPRRPQPPAQPPSRPEKRGGPLIAPNRGG 274
>FA98B_MOUSE (Q80VD1) Protein FAM98B| Length = 429 Score = 29.6 bits (65), Expect = 1.9 Identities = 13/38 (34%), Positives = 17/38 (44%) Frame = +3 Query: 66 DRSPARTASQPSPPAVVPWRPHRWAGTEMGTGRGGSSR 179 DR +P PP + PW+ + G G G GG R Sbjct: 307 DRGGRPNEIEPPPPEMPPWQKRQEGGGRGGWGGGGGGR 344
>MDCB_PSEAE (Q9I6S9) Probable 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A| synthase (EC 2.7.8.25) (2-(5''-triphosphoribosyl)-3'-dephospho-CoA synthase) Length = 293 Score = 29.3 bits (64), Expect = 2.4 Identities = 16/32 (50%), Positives = 18/32 (56%) Frame = -3 Query: 136 HRCGRHGTTAGGDG*EAVLAGERSRATAGRAK 41 HR GR G A DG AVLA S + AGR + Sbjct: 220 HRAGRVGLAAMQDGARAVLAAGGSASLAGRRR 251
>ODP2_RALEU (Q59098) Dihydrolipoyllysine-residue acetyltransferase component of| pyruvate dehydrogenase complex (EC 2.3.1.12) (E2) (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex) Length = 553 Score = 28.9 bits (63), Expect = 3.2 Identities = 19/57 (33%), Positives = 22/57 (38%) Frame = +3 Query: 21 VAHSHLPFALPAVALDRSPARTASQPSPPAVVPWRPHRWAGTEMGTGRGGSSRVASR 191 VA L L A +PA A+ P+P A P A GTGR R R Sbjct: 186 VAEGTLLLILEGAAAAAAPAAAAAAPAPAASAPAPAPAPAAAASGTGRSTCCRAGRR 242
>DLX2_MOUSE (P40764) Homeobox protein DLX-2 (Homeobox protein TES-1)| Length = 332 Score = 28.9 bits (63), Expect = 3.2 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 7/53 (13%) Frame = +3 Query: 57 VALDRSPARTASQP--SPPAVVP--W---RPHRWAGTEMGTGRGGSSRVASRP 194 + ++ P +AS P SPP P W P R AG G+G GG+ S P Sbjct: 219 IPTEQHPGASASPPCASPPVSAPASWDFGAPQRMAGGGPGSGGGGAGSSGSSP 271
>ZDH18_HUMAN (Q9NUE0) Palmitoyltransferase ZDHHC18 (EC 2.3.1.-) (Zinc finger| DHHC domain-containing protein 18) (DHHC-18) Length = 388 Score = 28.9 bits (63), Expect = 3.2 Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 5/64 (7%) Frame = +3 Query: 48 LPAVALDRSPARTASQ-----PSPPAVVPWRPHRWAGTEMGTGRGGSSRVASRPCRSY*V 212 LPA R P AS P+PPA P RW+ + G+G GS + RP R + V Sbjct: 16 LPASPGARRPGPAASPTPGPGPAPPAAPA--PPRWSSSGSGSG-SGSGSLGRRPRRKWEV 72 Query: 213 SRAR 224 R Sbjct: 73 FPGR 76
>GCP3_MOUSE (P58854) Gamma-tubulin complex component 3 (GCP-3)| Length = 905 Score = 28.9 bits (63), Expect = 3.2 Identities = 16/34 (47%), Positives = 24/34 (70%), Gaps = 3/34 (8%) Frame = +1 Query: 235 LLASAFGICRLILN---NPRKQASIVASYSSIWA 327 +L + + I L+LN +PRKQAS V SY+S++A Sbjct: 86 VLKNKWSILYLLLNLSEDPRKQASKVTSYASLFA 119
>LDB3_MOUSE (Q9JKS4) LIM domain-binding protein 3 (Z-band alternatively spliced| PDZ-motif protein) (Protein cypher) (Protein oracle) Length = 723 Score = 28.5 bits (62), Expect = 4.1 Identities = 18/48 (37%), Positives = 19/48 (39%) Frame = +3 Query: 51 PAVALDRSPARTASQPSPPAVVPWRPHRWAGTEMGTGRGGSSRVASRP 194 PA SPA T S PA P + T GG S ASRP Sbjct: 437 PAPTYTPSPAPTYSPSPAPAYTPSPAPNYTPTPSAAYSGGPSESASRP 484
>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1| Length = 888 Score = 28.5 bits (62), Expect = 4.1 Identities = 17/44 (38%), Positives = 23/44 (52%) Frame = +3 Query: 72 SPARTASQPSPPAVVPWRPHRWAGTEMGTGRGGSSRVASRPCRS 203 SP R +PSPPA P +P R + T + R SR + P R+ Sbjct: 390 SPPRRRHRPSPPASPPPKPRR-SPTPQQSNRARKSRGSVSPGRA 432
>PODXL_RABIT (Q28645) Podocalyxin-like protein 1 precursor| Length = 551 Score = 28.5 bits (62), Expect = 4.1 Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 1/48 (2%) Frame = +3 Query: 36 LPFALPAVALDRSPARTASQPSP-PAVVPWRPHRWAGTEMGTGRGGSS 176 +P +P S + S PSP PA+ P P AGTE TGRG +S Sbjct: 244 MPSPMPPSPASPSSSPFPSSPSPSPALQPSGPSA-AGTEDTTGRGPTS 290
>WNT9A_MOUSE (Q8R5M2) Protein Wnt-9a precursor (Wnt-14)| Length = 365 Score = 28.1 bits (61), Expect = 5.4 Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 3/58 (5%) Frame = +3 Query: 36 LPFALPAVALDRSPARTASQPSPPAVVPWRPHRWAGTEM---GTGRGGSSRVASRPCR 200 LP V LD SP+ + P R HR E G G SRV +RPC+ Sbjct: 283 LPRTPELVHLDDSPSFCLAGRFSPGTAGRRCHREKNCESICCGRGHNTQSRVVTRPCQ 340
>WNT9A_HUMAN (O14904) Protein Wnt-9a precursor (Wnt-14)| Length = 365 Score = 28.1 bits (61), Expect = 5.4 Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 3/58 (5%) Frame = +3 Query: 36 LPFALPAVALDRSPARTASQPSPPAVVPWRPHRWAGTEM---GTGRGGSSRVASRPCR 200 LP V LD SP+ + P R HR E G G SRV +RPC+ Sbjct: 283 LPRTPELVHLDDSPSFCLAGRFSPGTAGRRCHREKNCESICCGRGHNTQSRVVTRPCQ 340
>INT10_MOUSE (Q8K2A7) Integrator complex subunit 10| Length = 710 Score = 28.1 bits (61), Expect = 5.4 Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 1/34 (2%) Frame = -1 Query: 168 LLFRFPSPSLPTGV-VAMALRQAETAEKQSWPVN 70 LL RFP + GV + AL +AET E+Q PVN Sbjct: 135 LLRRFPETVVQHGVGLGEALLEAETIEEQDSPVN 168
>INT10_HUMAN (Q9NVR2) Integrator complex subunit 10 (Int10)| Length = 710 Score = 28.1 bits (61), Expect = 5.4 Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 1/34 (2%) Frame = -1 Query: 168 LLFRFPSPSLPTGV-VAMALRQAETAEKQSWPVN 70 LL RFP + GV + AL +AET E+Q PVN Sbjct: 135 LLRRFPETVVQHGVGLGEALLEAETIEEQESPVN 168
>PCAF_HUMAN (Q92831) Histone acetyltransferase PCAF (EC 2.3.1.48)| (P300/CBP-associated factor) (P/CAF) (Histone acetylase PCAF) Length = 832 Score = 28.1 bits (61), Expect = 5.4 Identities = 22/62 (35%), Positives = 28/62 (45%) Frame = +3 Query: 39 PFALPAVALDRSPARTASQPSPPAVVPWRPHRWAGTEMGTGRGGSSRVASRPCRSY*VSR 218 P ALP SP A+ S A P AGT G G GGS+R+A + + R Sbjct: 29 PAALPPAPPQGSPCAAAAGGSG-ACGPATAVAAAGTAEGPGGGGSARIAVKKAQLRSAPR 87 Query: 219 AR 224 A+ Sbjct: 88 AK 89
>NCOR2_MOUSE (Q9WU42) Nuclear receptor corepressor 2 (N-CoR2) (Silencing mediator| of retinoic acid and thyroid hormone receptor) (SMRT) (SMRTe) (Thyroid-, retinoic-acid-receptor-associated corepressor) (T3 receptor-associating factor) (TRAC) Length = 2472 Score = 28.1 bits (61), Expect = 5.4 Identities = 14/23 (60%), Positives = 15/23 (65%) Frame = +3 Query: 120 WRPHRWAGTEMGTGRGGSSRVAS 188 WRP GTE +G GGSSR AS Sbjct: 1792 WRP----GTEQSSGAGGSSRPAS 1810
>RP54_XANCV (P77998) RNA polymerase sigma-54 factor| Length = 479 Score = 28.1 bits (61), Expect = 5.4 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 4/43 (9%) Frame = +3 Query: 57 VALDRSPARTASQPSPPAVVP-WRPHRWAGTEM---GTGRGGS 173 +A+D SP+ + QP V P R W+ E+ G+G GGS Sbjct: 60 IAVDSSPSASTEQPQREEVAPAERDEDWSQDELQWTGSGSGGS 102
>INT10_MACFA (Q4R7B1) Integrator complex subunit 10| Length = 699 Score = 28.1 bits (61), Expect = 5.4 Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 1/34 (2%) Frame = -1 Query: 168 LLFRFPSPSLPTGV-VAMALRQAETAEKQSWPVN 70 LL RFP + GV + AL +AET E+Q PVN Sbjct: 124 LLRRFPETVVQHGVGLGEALLEAETIEEQESPVN 157
>LAG3_HUMAN (P18627) Lymphocyte activation gene 3 protein precursor (LAG-3)| (FDC protein) (CD223 antigen) Length = 525 Score = 27.3 bits (59), Expect = 9.2 Identities = 17/61 (27%), Positives = 25/61 (40%) Frame = +3 Query: 12 KATVAHSHLPFALPAVALDRSPARTASQPSPPAVVPWRPHRWAGTEMGTGRGGSSRVASR 191 +A V H P + P A P P+ P+ RP R+ +G G S R+ + Sbjct: 58 RAGVTWQHQPDSGPPAAAPGHPLAPGPHPAAPSSWGPRPRRYTVLSVGPGGLRSGRLPLQ 117 Query: 192 P 194 P Sbjct: 118 P 118
>CS007_HUMAN (Q9UPT8) Zinc finger CCCH-type domain-containing protein C19orf7| Length = 1303 Score = 27.3 bits (59), Expect = 9.2 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 3/36 (8%) Frame = +3 Query: 72 SPARTAS---QPSPPAVVPWRPHRWAGTEMGTGRGG 170 +P+ TAS SPPA P+ P A +G G GG Sbjct: 1102 APSPTASPSGDASPPATAPYDPRVLAAGGLGQGGGG 1137
>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1| (Ser/Arg-related nuclear matrix protein) (SR-related nuclear matrix protein of 160 kDa) (SRm160) Length = 904 Score = 27.3 bits (59), Expect = 9.2 Identities = 17/44 (38%), Positives = 23/44 (52%) Frame = +3 Query: 72 SPARTASQPSPPAVVPWRPHRWAGTEMGTGRGGSSRVASRPCRS 203 SP R +PSPPA P + R + T + R SRV+ P R+ Sbjct: 393 SPPRRRHRPSPPATPPPKT-RHSPTPQQSNRTRKSRVSVSPGRT 435
>LYSM1_STRGL (P25310) Lysozyme M1 precursor (EC 3.2.1.17)| (1,4-beta-N-acetylmuramidase M1) Length = 294 Score = 27.3 bits (59), Expect = 9.2 Identities = 11/33 (33%), Positives = 18/33 (54%) Frame = -1 Query: 228 WYVLCSPSMNGMVLKPPCCFLLFRFPSPSLPTG 130 W+ C+ S NGM K P + +P++P+G Sbjct: 220 WWNTCTGSWNGMAAKSPFWVAHWGVSAPTVPSG 252
>B3A3_RAT (P23348) Anion exchange protein 3 (Neuronal band 3-like protein)| (Solute carrier family 4 member 3) Length = 1227 Score = 27.3 bits (59), Expect = 9.2 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 11/39 (28%) Frame = +3 Query: 45 ALPAVAL--DRSPARTASQPSPPAVV---------PWRP 128 ALP+V L D+SP R+ S PSP A PW P Sbjct: 187 ALPSVGLPSDQSPQRSGSSPSPRARASRISTEKSRPWSP 225
>B3A3_MOUSE (P16283) Anion exchange protein 3 (Neuronal band 3-like protein)| (Solute carrier family 4 member 3) Length = 1227 Score = 27.3 bits (59), Expect = 9.2 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 11/39 (28%) Frame = +3 Query: 45 ALPAVAL--DRSPARTASQPSPPAVV---------PWRP 128 ALP+V L D+SP R+ S PSP A PW P Sbjct: 187 ALPSVGLQSDQSPQRSGSSPSPRARASRISTEKSRPWSP 225
>CDSA_HELPY (O25004) Phosphatidate cytidylyltransferase (EC 2.7.7.41)| (CDP-diglyceride synthetase) (CDP-diglyceride pyrophosphorylase) (CDP-diacylglycerol synthase) (CDS) (CTP:phosphatidate cytidylyltransferase) (CDP-DAG synthase) (CDP-DG synthetase) Length = 266 Score = 27.3 bits (59), Expect = 9.2 Identities = 9/33 (27%), Positives = 21/33 (63%) Frame = -3 Query: 349 LVIFTWMRPKSNCRRLQCSLVSSDYLESICRYQ 251 +++ +W+ N R ++C+L+S+ + S+ YQ Sbjct: 64 ILVLSWVAAYFNGRPIECALISAMVMASVIAYQ 96
>STAP2_MOUSE (Q8R0L1) Signal-transducing adaptor protein 2 (STAP-2)| Length = 411 Score = 27.3 bits (59), Expect = 9.2 Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 1/41 (2%) Frame = +3 Query: 69 RSPARTASQPSPPAVVPWRPHRWAGTEMGTGR-GGSSRVAS 188 + PAR ++P P+VVP +P A T + T + GGSS AS Sbjct: 347 KKPARLPAKPPKPSVVP-KPDLKAITSVWTRKLGGSSSQAS 386
>CENG1_RAT (Q8CGU4) Centaurin-gamma 1 (ARF-GAP with GTP-binding protein-like,| ankyrin repeat and pleckstrin homology domains 2) (AGAP-2) (Phosphatidylinositol-3-kinase enhancer) (PIKE) Length = 1186 Score = 27.3 bits (59), Expect = 9.2 Identities = 11/30 (36%), Positives = 18/30 (60%) Frame = +3 Query: 96 PSPPAVVPWRPHRWAGTEMGTGRGGSSRVA 185 P PPA P++ +G + G G+G SR++ Sbjct: 182 PPPPAPKPFKTVTTSGAKAGGGKGAGSRLS 211
>CENG1_MOUSE (Q3UHD9) Centaurin-gamma 1 (ARF-GAP with GTP-binding protein-like,| ankyrin repeat and pleckstrin homology domains 2) (AGAP-2) (Phosphatidylinositol-3-kinase enhancer) (PIKE) Length = 1186 Score = 27.3 bits (59), Expect = 9.2 Identities = 11/30 (36%), Positives = 18/30 (60%) Frame = +3 Query: 96 PSPPAVVPWRPHRWAGTEMGTGRGGSSRVA 185 P PPA P++ +G + G G+G SR++ Sbjct: 182 PPPPAPKPFKTVTTSGAKAGGGKGAGSRLS 211
>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1| Length = 917 Score = 27.3 bits (59), Expect = 9.2 Identities = 17/44 (38%), Positives = 23/44 (52%) Frame = +3 Query: 72 SPARTASQPSPPAVVPWRPHRWAGTEMGTGRGGSSRVASRPCRS 203 SP R +PSPPA P + R + T + R SRV+ P R+ Sbjct: 393 SPPRRRHRPSPPATPPPKT-RHSPTPQQSNRTRKSRVSVSPGRT 435 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,894,496 Number of Sequences: 219361 Number of extensions: 1019294 Number of successful extensions: 3127 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 3015 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3126 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 1407308304 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
