ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl18d09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF043091.1|AF043091 Hordeum vulgare dehydrin 6 (dhn6) gene, c... 64 3e-07
2gb|AC130729.3| Oryza sativa (japonica cultivar-group) chromosome... 56 8e-05
3dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 56 8e-05
4dbj|AK119621.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.020
5dbj|AK070558.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.020
6gb|AC110509.21| Mus musculus chromosome 8, clone RP24-423G4, com... 44 0.32
7gb|AC158316.3| Mus musculus chromosome 8, clone RP23-189N8, comp... 44 0.32
8dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 44 0.32
9ref|XM_415700.1| PREDICTED: Gallus gallus similar to LOC402883 p... 42 1.3
10gb|AC147985.3| Mus musculus BAC clone RP24-402C11 from chromosom... 42 1.3
11gb|AC134591.4| Mus musculus BAC clone RP23-376L4 from chromosome... 42 1.3
12emb|Z11719.1|CCPH30ASP C.cobaya PH-30 alpha mRNA for sperm protein 42 1.3
13gb|CP000232.1| Moorella thermoacetica ATCC 39073, complete genome 42 1.3
14gb|AC118593.6| Mus musculus chromosome 19, clone RP24-464I2, com... 42 1.3
15gb|AC084162.3| Mus musculus strain C57BL6/J chromosome 5 clone R... 40 5.0
16gb|AF480884.1| Chimpanzee cytomegalovirus, complete genome 40 5.0
17gb|AC124120.5| Mus musculus chromosome 1, clone RP24-64M13, comp... 40 5.0
18ref|XM_788185.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 5.0
19gb|AC161432.5| Mus musculus chromosome 1, clone RP23-453N14, com... 40 5.0
20emb|Z25420.1|GDINCENPB G.domesticus class II INCENP protein mRNA... 40 5.0
21emb|Z25419.1|GDINCENPA G.domesticus class I INCENP protein mRNA,... 40 5.0
22emb|AL954258.2| Pan troglodytes chromosome 22 clone PTB-146D01 m... 40 5.0
23ref|NM_205330.1| Gallus gallus inner centromere protein antigens... 40 5.0
24gb|AC154289.1| Mus musculus BAC clone RP23-449E11 from chromosom... 40 5.0
25emb|X89920.1|SABTACTIN S.aurata mRNA for beta-actin protein 40 5.0
26gb|AC132393.4| Mus musculus BAC clone RP23-386K20 from 1, comple... 40 5.0
27emb|AL773552.6| Mouse DNA sequence from clone RP23-103H15 on chr... 40 5.0 
>gb|AF043091.1|AF043091 Hordeum vulgare dehydrin 6 (dhn6) gene, complete cds
          Length = 3086

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 35/36 (97%)
 Strand = Plus / Minus

                                                
Query: 338  gaagattacgagctacgtgtgacctttatatgattt 373
            |||||||||||||||| |||||||||||||||||||
Sbjct: 3010 gaagattacgagctacatgtgacctttatatgattt 2975



 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 33/34 (97%)
 Strand = Plus / Minus

                                              
Query: 275  ataatccgaggaaacaagcgagcattgtagcctc 308
            ||||||||||||||||||| ||||||||||||||
Sbjct: 3053 ataatccgaggaaacaagcaagcattgtagcctc 3020
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>gb|AC130729.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0668F02,
             complete sequence
          Length = 178061

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                     
Query: 174   agcagggtggcttcaagaccatgccgttcatactaggtga 213
             |||||||||||||||||||  |||| ||||||||||||||
Sbjct: 82035 agcagggtggcttcaagacattgccattcatactaggtga 82074



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                        
Query: 172   gcagcagggtggcttcaagaccatgccgttcatactaggtgag 214
             ||||||||| ||| ||||||||||||||||||| || ||||||
Sbjct: 96112 gcagcagggcggcatcaagaccatgccgttcattctcggtgag 96154



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                   
Query: 174   agcagggtggcttcaagaccatgccgttcatactaggt 211
             ||||||| ||||||| ||||||||||||||| ||||||
Sbjct: 88285 agcagggaggcttcaggaccatgccgttcatcctaggt 88248
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                        
Query: 174      agcagggtggcttcaagaccatgccgttcatactaggtga 213
                |||||||||||||||||||  |||| ||||||||||||||
Sbjct: 19940871 agcagggtggcttcaagacattgccattcatactaggtga 19940910



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                           
Query: 172      gcagcagggtggcttcaagaccatgccgttcatactaggtgag 214
                ||||||||| ||| ||||||||||||||||||| || ||||||
Sbjct: 19954948 gcagcagggcggcatcaagaccatgccgttcattctcggtgag 19954990



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                      
Query: 174      agcagggtggcttcaagaccatgccgttcatactaggt 211
                ||||||| ||||||| ||||||||||||||| ||||||
Sbjct: 19947121 agcagggaggcttcaggaccatgccgttcatcctaggt 19947084
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>dbj|AK119621.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-117-H03, full
           insert sequence
          Length = 2086

 Score = 48.1 bits (24), Expect = 0.020
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                               
Query: 174 agcagggtggcttcaagaccatgccgttcatactag 209
           ||||||| ||||||| ||||||||||||||| ||||
Sbjct: 168 agcagggaggcttcaggaccatgccgttcatcctag 203
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>dbj|AK070558.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023060I20, full
           insert sequence
          Length = 2209

 Score = 48.1 bits (24), Expect = 0.020
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                               
Query: 174 agcagggtggcttcaagaccatgccgttcatactag 209
           ||||||| ||||||| ||||||||||||||| ||||
Sbjct: 169 agcagggaggcttcaggaccatgccgttcatcctag 204
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>gb|AC110509.21| Mus musculus chromosome 8, clone RP24-423G4, complete sequence
          Length = 190160

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 159    ggaagaggaggaagcagcaggg 180
              ||||||||||||||||||||||
Sbjct: 188746 ggaagaggaggaagcagcaggg 188767
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>gb|AC158316.3| Mus musculus chromosome 8, clone RP23-189N8, complete sequence
          Length = 183192

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 159    ggaagaggaggaagcagcaggg 180
              ||||||||||||||||||||||
Sbjct: 144617 ggaagaggaggaagcagcaggg 144596
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 121     ggcgaccacaccggtgggcagg 142
               ||||||||||||||||||||||
Sbjct: 3643476 ggcgaccacaccggtgggcagg 3643497
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>ref|XM_415700.1| PREDICTED: Gallus gallus similar to LOC402883 protein (LOC417451),
           mRNA
          Length = 2004

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 159 ggaagaggaggaagcagcagg 179
           |||||||||||||||||||||
Sbjct: 92  ggaagaggaggaagcagcagg 112
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>gb|AC147985.3| Mus musculus BAC clone RP24-402C11 from chromosome 19, complete
             sequence
          Length = 170479

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 159   ggaagaggaggaagcagcagg 179
             |||||||||||||||||||||
Sbjct: 12175 ggaagaggaggaagcagcagg 12155
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>gb|AC134591.4| Mus musculus BAC clone RP23-376L4 from chromosome 19, complete sequence
          Length = 222814

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 159    ggaagaggaggaagcagcagg 179
              |||||||||||||||||||||
Sbjct: 183484 ggaagaggaggaagcagcagg 183464
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>emb|Z11719.1|CCPH30ASP C.cobaya PH-30 alpha mRNA for sperm protein
          Length = 3292

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 154  gaaccggaagaggaggaagcagcag 178
            |||||||| ||||||||||||||||
Sbjct: 2715 gaaccggaggaggaggaagcagcag 2739
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>gb|CP000232.1| Moorella thermoacetica ATCC 39073, complete genome
          Length = 2628784

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 123     cgaccacaccggtgggcaggg 143
               |||||||||||||||||||||
Sbjct: 1993820 cgaccacaccggtgggcaggg 1993800
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>gb|AC118593.6| Mus musculus chromosome 19, clone RP24-464I2, complete sequence
          Length = 126059

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 159   ggaagaggaggaagcagcagg 179
             |||||||||||||||||||||
Sbjct: 32277 ggaagaggaggaagcagcagg 32257
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>gb|AC084162.3| Mus musculus strain C57BL6/J chromosome 5 clone RP23-11P12, complete
              sequence
          Length = 159180

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 159    ggaagaggaggaagcagcag 178
              ||||||||||||||||||||
Sbjct: 150960 ggaagaggaggaagcagcag 150941
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>gb|AF480884.1| Chimpanzee cytomegalovirus, complete genome
          Length = 241087

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 159    ggaagaggaggaagcagcag 178
              ||||||||||||||||||||
Sbjct: 173235 ggaagaggaggaagcagcag 173254
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>gb|AC124120.5| Mus musculus chromosome 1, clone RP24-64M13, complete sequence
          Length = 242227

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 159    ggaagaggaggaagcagcag 178
              ||||||||||||||||||||
Sbjct: 159776 ggaagaggaggaagcagcag 159795
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>ref|XM_788185.1| PREDICTED: Strongylocentrotus purpuratus similar to p47 protein
           isoform a (LOC588505), mRNA
          Length = 1245

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 159 ggaagaggaggaagcagcag 178
           ||||||||||||||||||||
Sbjct: 280 ggaagaggaggaagcagcag 299
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>gb|AC161432.5| Mus musculus chromosome 1, clone RP23-453N14, complete sequence
          Length = 199303

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 159   ggaagaggaggaagcagcag 178
             ||||||||||||||||||||
Sbjct: 66911 ggaagaggaggaagcagcag 66930
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>emb|Z25420.1|GDINCENPB G.domesticus class II INCENP protein mRNA, complete CDS
          Length = 4354

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 154 gaaccggaagaggaggaagc 173
           ||||||||||||||||||||
Sbjct: 222 gaaccggaagaggaggaagc 241
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>emb|Z25419.1|GDINCENPA G.domesticus class I INCENP protein mRNA, complete CDS
          Length = 4481

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 154 gaaccggaagaggaggaagc 173
           ||||||||||||||||||||
Sbjct: 222 gaaccggaagaggaggaagc 241
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>emb|AL954258.2| Pan troglodytes chromosome 22 clone PTB-146D01 map 22q22.3, complete
             sequence
          Length = 185080

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 3     gggcatgtgaaggccactgt 22
             ||||||||||||||||||||
Sbjct: 47800 gggcatgtgaaggccactgt 47819
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>ref|NM_205330.1| Gallus gallus inner centromere protein antigens 135/155kDa
           (INCENP), mRNA
          Length = 4481

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 154 gaaccggaagaggaggaagc 173
           ||||||||||||||||||||
Sbjct: 222 gaaccggaagaggaggaagc 241
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>gb|AC154289.1| Mus musculus BAC clone RP23-449E11 from chromosome 16, complete
             sequence
          Length = 191617

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 159   ggaagaggaggaagcagcag 178
             ||||||||||||||||||||
Sbjct: 44533 ggaagaggaggaagcagcag 44552
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>emb|X89920.1|SABTACTIN S.aurata mRNA for beta-actin protein
          Length = 1806

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 159 ggaagaggaggaagcagcag 178
           ||||||||||||||||||||
Sbjct: 705 ggaagaggaggaagcagcag 686
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>gb|AC132393.4| Mus musculus BAC clone RP23-386K20 from 1, complete sequence
          Length = 220050

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 157    ccggaagaggaggaagcagc 176
              ||||||||||||||||||||
Sbjct: 170533 ccggaagaggaggaagcagc 170552
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>emb|AL773552.6| Mouse DNA sequence from clone RP23-103H15 on chromosome X, complete
             sequence
          Length = 140502

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 159   ggaagaggaggaagcagcag 178
             ||||||||||||||||||||
Sbjct: 52975 ggaagaggaggaagcagcag 52956


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,700,086
Number of Sequences: 3902068
Number of extensions: 2700086
Number of successful extensions: 65000
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 64889
Number of HSP's gapped (non-prelim): 111
length of query: 375
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 353
effective length of database: 17,147,199,772
effective search space: 6052961519516
effective search space used: 6052961519516
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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