>MMPL3_MYCTU (O53657) Putative membrane protein mmpL3|
          Length = 944

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 21/55 (38%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
 Frame = +3

Query: 177  AAGDPRFPIALLAVAAGDGDQGTRI-----AAAAYLKIFARRNMEGGLSSSDLYR 326
            AAGDP  P A L +   DGD          A     K   RR   G LS+ DL R
Sbjct: 885  AAGDPAEPTAALPIIRSDGDDSEAATEQLNARGTSDKTRQRRRGGGALSAQDLLR 939

>TBC2_CHLRE (Q8VXP3) Tbc2 translation factor, chloroplast precursor|
          Length = 1115

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 10/49 (20%)
 Frame = +3

Query: 147  AATAGLDRISAAGDPRFPIALLAVAAGDG----------DQGTRIAAAA 263
            AA AG    +AAGD    ++ +  AAGDG          D GT   AAA
Sbjct: 933  AAPAGASSAAAAGDSPAALSAVPAAAGDGALVPSFMSIDDDGTAAVAAA 981

>YC19_KLEPN (Q48445) Hypothetical UPF0053 protein in cps region (ORF19)|
           (Fragment)
          Length = 320

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
 Frame = -1

Query: 396 LQSALEELQVPLEAEHEQAGSET-----PCTDRTTRAPLPCCAGRKFSSKPRQLFLYLDH 232
           L + +EE+    + +H Q GS T     P  D     PLP    R++ +    L  YL H
Sbjct: 240 LPNEVEEIDARHDIQHHQDGSWTVNGHMPLEDLVQYVPLPLDDKREYHTVAGLLMEYLQH 299

Query: 231 HP 226
            P
Sbjct: 300 VP 301

>NU2C_SYNPX (Q7U538) NAD(P)H-quinone oxidoreductase chain 2 (EC 1.6.5.-)|
           (NAD(P)H dehydrogenase I, chain 2) (NDH-1, chain 2)
          Length = 523

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 313 PICTGSFATSLLMLCFEWN 369
           PIC G   T+L++L  +WN
Sbjct: 60  PICYGGLGTALVLLALQWN 78

>Y4JQ_RHISN (P55517) Hypothetical 115.9 kDa protein y4jQ|
          Length = 1039

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = +3

Query: 147 AATAGLDRISAAG-DPRFPIALLAVAAGDGDQGTRIAAAAYLKIFARRNMEGGLSSSDLY 323
           +A+   D ++  G DPR  I L  VAA  GD+G  +    Y+ +    N+ G    S++ 
Sbjct: 462 SASVTEDEVARIGHDPRVAIGLSRVAASLGDEGQNL---VYIAVEQHLNVRGMSKPSEIV 518

Query: 324 REFRYQLA 347
            +    +A
Sbjct: 519 ADSAVDVA 526

>PKP3_HUMAN (Q9Y446) Plakophilin-3|
          Length = 797

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -2

Query: 398 NFNQHSKNCRFHSKQSMSKLVAKLPVQIGRREPPFHV 288
           N +++++N    S + +S L+ KLP  +G + PP  V
Sbjct: 681 NLSRNARNKDEMSTKVVSHLIEKLPGSVGEKSPPAEV 717

>TEGU_HHV11 (P10220) Large tegument protein (Virion protein UL36)|
          Length = 3164

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
 Frame = +3

Query: 102  SLLAATLSADKTSVDAATAGLDRISAAGDPRFPIALLAVAAGDGD---QGTRIAAAAYLK 272
            S + A + A +  VDA TA     +AA DP  P+A LA  A       + TR+A  A + 
Sbjct: 1189 STVDAAVRAHRVLVDAVTA---LGAAASDPASPLAFLAAMADSAAGYVKATRLALDARVA 1245

Query: 273  IFARRNMEGGLSSSDLYREFR 335
            I     +  G +++DL  + R
Sbjct: 1246 IAQLTTL--GSAAADLVVQVR 1264

>MTNA_LEPIN (Q8F2A8) Probable methylthioribose-1-phosphate isomerase (EC|
           5.3.1.23) (MTR-1-P isomerase)
          Length = 364

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 17/76 (22%)
 Frame = +3

Query: 141 VDAATAGLDRISAAGDP-----RFPIALLA--------VAAGDGDQGTRIAAAAYLKIFA 281
           +DA   G DRI++ GD       +P+A++A        VAA       RI   +Y+ I  
Sbjct: 234 IDAVIVGADRIASNGDTANKIGTYPLAIVAKHHGVPFYVAATAKSMDFRIPNGSYIPIEM 293

Query: 282 RRNME----GGLSSSD 317
           R+  E    G L  SD
Sbjct: 294 RKEEEITSFGFLKDSD 309

>MTNA_LEPIC (Q72T46) Probable methylthioribose-1-phosphate isomerase (EC|
           5.3.1.23) (MTR-1-P isomerase)
          Length = 364

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 17/76 (22%)
 Frame = +3

Query: 141 VDAATAGLDRISAAGDP-----RFPIALLA--------VAAGDGDQGTRIAAAAYLKIFA 281
           +DA   G DRI++ GD       +P+A++A        VAA       RI   +Y+ I  
Sbjct: 234 IDAVIVGADRIASNGDTANKIGTYPLAIVAKHHGVPFYVAATAKSMDFRIPNGSYIPIEM 293

Query: 282 RRNME----GGLSSSD 317
           R+  E    G L  SD
Sbjct: 294 RKEEEITSFGFLKDSD 309

>PUR6_METSM (P22348) Probable phosphoribosylaminoimidazole carboxylase (EC|
           4.1.1.21) (AIR carboxylase) (AIRC)
          Length = 339

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 18/63 (28%), Positives = 29/63 (46%)
 Frame = +3

Query: 141 VDAATAGLDRISAAGDPRFPIALLAVAAGDGDQGTRIAAAAYLKIFARRNMEGGLSSSDL 320
           VD   +GLD + ++    +P  +  V    GD G  I AA  L ++     +  L S + 
Sbjct: 88  VDVKVSGLDALYSSVQMPYPSPVATVGIDRGDNGA-ILAARILGLYDEEIRKKVLESKEG 146

Query: 321 YRE 329
           YR+
Sbjct: 147 YRQ 149

>CH60_THEBR (Q60024) 60 kDa chaperonin (Protein Cpn60) (groEL protein)|
          Length = 540

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +3

Query: 138 SVDAATAGLDRISAAGDPRFPIALLA-VAAGDGDQGTRIAAA 260
           +VDAA  GL RIS   D +  IA +A ++A D + G  IA A
Sbjct: 121 AVDAAVEGLKRISKPIDNKESIAHVASISAADEEIGKLIAEA 162

>PLSL_HUMAN (P13796) Plastin-2 (L-plastin) (Lymphocyte cytosolic protein 1)|
           (LCP-1) (LC64P)
          Length = 627

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +3

Query: 216 VAAGDGDQGTRIAAAAYLKIFARRNMEGGLSSSDLYREFR 335
           +A GD DQ  RI+   ++KIF       GL S+D+ + FR
Sbjct: 58  MATGDLDQDGRISFDEFIKIF------HGLKSTDVAKTFR 91

>HAIR_HUMAN (O43593) Protein hairless|
          Length = 1189

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -1

Query: 354 EHEQAGSETPCTDRTTRAPLPC 289
           E     +ETP  DR  R PLPC
Sbjct: 734 EETPDSAETPAEDRAGRGPLPC 755

>XDHD_ECOLI (Q46814) Probable hypoxanthine oxidase xdhD (EC 1.-.-.-)|
          Length = 956

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -2

Query: 347 SKLVAKLPVQIGRREPPFHVAPGENFQVSRGSYSCTLITIPC 222
           S+ VAK+ V++G ++     A   +F+ + G Y    +T+PC
Sbjct: 483 SRHVAKVTVKLGAKKDGRLTAVKMDFRANTGPYGNHSLTVPC 524

>XDHD_ECO57 (Q8XD64) Probable hypoxanthine oxidase xdhD (EC 1.-.-.-)|
          Length = 956

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -2

Query: 347 SKLVAKLPVQIGRREPPFHVAPGENFQVSRGSYSCTLITIPC 222
           S+ VAK+ V++G ++     A   +F+ + G Y    +T+PC
Sbjct: 483 SRHVAKVTVKLGAKKDGRLTAVKMDFRANTGPYGNHSLTVPC 524


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,681,539
Number of Sequences: 219361
Number of extensions: 495283
Number of successful extensions: 1668
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1667
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 1365190992
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)