ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bastl18d07 |
|---|---|
| Clone Library Name | barley_pub |
>LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 58.5 bits (140), Expect = 5e-09 Identities = 29/29 (100%), Positives = 29/29 (100%) Frame = +1 Query: 46 MLLGGLIDTLTGANKSARLKGTVVLMRKN 132 MLLGGLIDTLTGANKSARLKGTVVLMRKN Sbjct: 1 MLLGGLIDTLTGANKSARLKGTVVLMRKN 29
>LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12)| Length = 866 Score = 48.5 bits (114), Expect = 5e-06 Identities = 21/28 (75%), Positives = 27/28 (96%) Frame = +1 Query: 49 LLGGLIDTLTGANKSARLKGTVVLMRKN 132 +LGG+IDT+TG++K +RLKGTVVLMRKN Sbjct: 1 MLGGIIDTITGSSKQSRLKGTVVLMRKN 28
>LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase L-2)| Length = 870 Score = 39.7 bits (91), Expect = 0.002 Identities = 20/28 (71%), Positives = 25/28 (89%) Frame = +1 Query: 49 LLGGLIDTLTGANKSARLKGTVVLMRKN 132 +LGG+I LTG NK+ARLKG++VLMRKN Sbjct: 1 MLGGIIGGLTG-NKNARLKGSLVLMRKN 27
>LOXB_LYCES (P38416) Lipoxygenase B (EC 1.13.11.12)| Length = 859 Score = 33.9 bits (76), Expect = 0.13 Identities = 13/29 (44%), Positives = 21/29 (72%) Frame = +1 Query: 46 MLLGGLIDTLTGANKSARLKGTVVLMRKN 132 M LGG++D + G + ++KG V+LM+KN Sbjct: 1 MSLGGIVDAILGKDDRPKVKGRVILMKKN 29
>RL2_XANCP (Q8PC46) 50S ribosomal protein L2| Length = 275 Score = 29.3 bits (64), Expect = 3.2 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%) Frame = +3 Query: 18 KARRGGQE--QDAAGRANRHPHGGEQERPAQGH 110 K RRG + + AA AN HPHGG + + QG+ Sbjct: 211 KRRRGVRPTVRGAAMNANDHPHGGGEAKAGQGN 243
>LOXA_LYCES (P38415) Lipoxygenase A (EC 1.13.11.12)| Length = 860 Score = 29.3 bits (64), Expect = 3.2 Identities = 15/28 (53%), Positives = 21/28 (75%) Frame = +1 Query: 49 LLGGLIDTLTGANKSARLKGTVVLMRKN 132 L+GGLI G + S ++KGTVV+M+KN Sbjct: 5 LVGGLIG---GHHDSKKVKGTVVMMKKN 29
>AGO2_DROME (Q9VUQ5) Argonaute 2 protein| Length = 1214 Score = 28.5 bits (62), Expect = 5.4 Identities = 13/40 (32%), Positives = 19/40 (47%) Frame = +3 Query: 9 GAVKARRGGQEQDAAGRANRHPHGGEQERPAQGHGGAHAQ 128 G + R GQ+Q + + GG Q+RP+ G H Q Sbjct: 315 GGYQQRPSGQQQGGHQQGRQGQEGGYQQRPSGQQQGGHQQ 354 Score = 28.5 bits (62), Expect = 5.4 Identities = 13/40 (32%), Positives = 19/40 (47%) Frame = +3 Query: 9 GAVKARRGGQEQDAAGRANRHPHGGEQERPAQGHGGAHAQ 128 G + R GQ+Q + + GG Q+RP+ G H Q Sbjct: 292 GGYQQRPSGQQQGGHQQGRQGQEGGYQQRPSGQQQGGHQQ 331 Score = 27.7 bits (60), Expect = 9.2 Identities = 13/40 (32%), Positives = 19/40 (47%) Frame = +3 Query: 9 GAVKARRGGQEQDAAGRANRHPHGGEQERPAQGHGGAHAQ 128 G + R GQ+Q + + GG Q+RP+ G H Q Sbjct: 269 GGYQQRPPGQQQGGHEQGRQGQEGGYQQRPSGQQQGGHQQ 308 Score = 27.7 bits (60), Expect = 9.2 Identities = 13/40 (32%), Positives = 18/40 (45%) Frame = +3 Query: 9 GAVKARRGGQEQDAAGRANRHPHGGEQERPAQGHGGAHAQ 128 G + R GQ+Q + + GG Q+RP G H Q Sbjct: 223 GGYQQRPSGQQQGGHQQGRQGQEGGYQQRPPGQQQGGHQQ 262 Score = 27.7 bits (60), Expect = 9.2 Identities = 13/40 (32%), Positives = 19/40 (47%) Frame = +3 Query: 9 GAVKARRGGQEQDAAGRANRHPHGGEQERPAQGHGGAHAQ 128 G + R GQ+Q + + GG Q+RP+ G H Q Sbjct: 200 GGYQQRPPGQQQGGHQQGRQGQEGGYQQRPSGQQQGGHQQ 239 Score = 27.7 bits (60), Expect = 9.2 Identities = 13/40 (32%), Positives = 18/40 (45%) Frame = +3 Query: 9 GAVKARRGGQEQDAAGRANRHPHGGEQERPAQGHGGAHAQ 128 G + R GQ+Q + + GG Q+RP G H Q Sbjct: 177 GGYQQRPSGQQQGGHQQGRQGQEGGYQQRPPGQQQGGHQQ 216 Score = 27.7 bits (60), Expect = 9.2 Identities = 13/40 (32%), Positives = 19/40 (47%) Frame = +3 Query: 9 GAVKARRGGQEQDAAGRANRHPHGGEQERPAQGHGGAHAQ 128 G + R GQ+Q + + GG Q+RP+ G H Q Sbjct: 154 GGYQQRPPGQQQGGHQQGRQGQEGGYQQRPSGQQQGGHQQ 193
>LOX1_ARATH (Q06327) Lipoxygenase 1 (EC 1.13.11.12)| Length = 859 Score = 28.5 bits (62), Expect = 5.4 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 3/31 (9%) Frame = +1 Query: 49 LLGGLIDTLTGANKSA---RLKGTVVLMRKN 132 + G L D LTG ++KGTVVLM+KN Sbjct: 1 MFGELRDLLTGGGNETTTKKVKGTVVLMKKN 31
>SRCH_RABIT (P16230) Sarcoplasmic reticulum histidine-rich calcium-binding| protein precursor Length = 852 Score = 28.1 bits (61), Expect = 7.1 Identities = 11/38 (28%), Positives = 21/38 (55%) Frame = +3 Query: 18 KARRGGQEQDAAGRANRHPHGGEQERPAQGHGGAHAQE 131 + +RGG E++ + H ++E +GHG + +QE Sbjct: 661 RVKRGGSEEEEEQKGTHHHSLEDEEDEEEGHGRSLSQE 698
>LOX3_SOYBN (P09186) Seed lipoxygenase-3 (EC 1.13.11.12) (L-3)| Length = 857 Score = 28.1 bits (61), Expect = 7.1 Identities = 14/28 (50%), Positives = 20/28 (71%) Frame = +1 Query: 49 LLGGLIDTLTGANKSARLKGTVVLMRKN 132 +LGGL+ ++ ++KGTVVLMRKN Sbjct: 1 MLGGLL------HRGHKIKGTVVLMRKN 22
>CSP_PLAKU (P04922) Circumsporozoite protein precursor (CS)| Length = 351 Score = 27.7 bits (60), Expect = 9.2 Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 1/37 (2%) Frame = +3 Query: 9 GAVKARRGGQEQDAAGRANRHPHGGEQ-ERPAQGHGG 116 G A G EQ AAG P G + E+PA G GG Sbjct: 187 GEQPAAGAGGEQPAAGAGGEQPAAGARGEQPAAGAGG 223 Score = 27.7 bits (60), Expect = 9.2 Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 1/37 (2%) Frame = +3 Query: 9 GAVKARRGGQEQDAAGRANRHPHGGEQ-ERPAQGHGG 116 G A G EQ AAG P G + E+PA G GG Sbjct: 160 GEQPAAGAGGEQPAAGAGGEQPAAGARGEQPAAGAGG 196 Score = 27.7 bits (60), Expect = 9.2 Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 1/37 (2%) Frame = +3 Query: 9 GAVKARRGGQEQDAAGRANRHPHGGEQ-ERPAQGHGG 116 G A G EQ AAG P G + E+PA G GG Sbjct: 106 GEQPAAGAGGEQPAAGAGGEQPAAGARGEQPAAGAGG 142
>VIV_ORYSA (P37398) Protein viviparous homolog| Length = 728 Score = 27.7 bits (60), Expect = 9.2 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%) Frame = +3 Query: 3 LVGAVKARRGGQEQ-DAAGRANRHPHGGEQE 92 L+ VK RR QEQ +++G +H HG ++ Sbjct: 632 LIRGVKVRRAAQEQGNSSGAVGKHKHGSPEK 662 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 16,928,360 Number of Sequences: 219361 Number of extensions: 190893 Number of successful extensions: 936 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 842 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 932 length of database: 80,573,946 effective HSP length: 19 effective length of database: 76,406,087 effective search space used: 1833746088 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
