ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl18d05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL139191.15| Human DNA sequence from clone RP3-465M14 on chr... 42 0.23
2gb|AC005543.2|AC005543 Homo sapiens chromosome 4 clone B320D6 ma... 42 0.23
3emb|AL133168.6|CNS01DU7 Human chromosome 14 DNA sequence BAC R-1... 38 3.5

>emb|AL139191.15| Human DNA sequence from clone RP3-465M14 on chromosome 6q22.33-23.3
              Contains the 5' end of the PREP gene for prolyl
              endopeptidase and a CpG island, complete sequence
          Length = 127973

 Score = 42.1 bits (21), Expect = 0.23
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 51     caatcaacagcctttggttgatggcgatg 79
              |||||||||||||||| ||||||| ||||
Sbjct: 114759 caatcaacagcctttgattgatggtgatg 114731



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>gb|AC005543.2|AC005543 Homo sapiens chromosome 4 clone B320D6 map 4q25, complete sequence
          Length = 79810

 Score = 42.1 bits (21), Expect = 0.23
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 51    caatcaacagcctttggttgatggcgatg 79
             |||||||||||||||| ||||||| ||||
Sbjct: 53789 caatcaacagcctttgattgatggtgatg 53817



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>emb|AL133168.6|CNS01DU7 Human chromosome 14 DNA sequence BAC R-187K17 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 195115

 Score = 38.2 bits (19), Expect = 3.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 63    tttggttgatggcgatgaa 81
             |||||||||||||||||||
Sbjct: 72555 tttggttgatggcgatgaa 72537


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 782,126
Number of Sequences: 3902068
Number of extensions: 782126
Number of successful extensions: 50021
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 50017
Number of HSP's gapped (non-prelim): 4
length of query: 84
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 63
effective length of database: 17,151,101,840
effective search space: 1080519415920
effective search space used: 1080519415920
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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