ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl18d04 |
|---|---|
| Clone Library Name | barley_pub |
>PLSX_DEIRA (Q46578) Fatty acid/phospholipid synthesis protein plsX| Length = 360 Score = 31.6 bits (70), Expect = 0.54 Identities = 18/44 (40%), Positives = 20/44 (45%), Gaps = 4/44 (9%) Frame = -1 Query: 251 PHSLRRPRGHGRQQAASPETRAVRG----SGVLGFRGAATLSPP 132 P RRPR R+ A P R+ G SGV G G T PP Sbjct: 314 PRQRRRPRRQKRRAACRPRPRSAAGRAPGSGVRGAAGLRTAEPP 357
>HNRPR_HUMAN (O43390) Heterogeneous nuclear ribonucleoprotein R (hnRNP R)| Length = 633 Score = 30.4 bits (67), Expect = 1.2 Identities = 18/33 (54%), Positives = 18/33 (54%) Frame = -1 Query: 188 AVRGSGVLGFRGAATLSPPQRHRGALPHVGRGG 90 AVRG G G RG PP R RGA P GR G Sbjct: 498 AVRGRG--GGRGGRGAPPPPRGRGAPPPRGRAG 528
>SYV_XYLFA (Q9PH12) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 994 Score = 29.6 bits (65), Expect = 2.0 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 10/52 (19%) Frame = -1 Query: 257 SVPHSLRRPRGHGRQQAASP----------ETRAVRGSGVLGFRGAATLSPP 132 ++PH+L+ PRG Q P ET A RG ++ RGA T PP Sbjct: 390 AIPHTLQVPRGDRTGQVIEPYLTAQWFVKMETLAARGLALVE-RGAVTFVPP 440
>ZMYM3_MOUSE (Q9JLM4) Zinc finger MYM-type protein 3 (Zinc finger protein 261)| (DXHXS6673E protein) Length = 1370 Score = 29.3 bits (64), Expect = 2.7 Identities = 13/32 (40%), Positives = 17/32 (53%) Frame = +1 Query: 70 CQIPSIAPPRPTCGSAPRCLCGGLSVAAPRNP 165 CQ P + PP P G++P G L AP +P Sbjct: 119 CQTPEVMPPDPGAGASPPSPEGLLEPLAPDSP 150
>MDC1_HUMAN (Q14676) Mediator of DNA damage checkpoint protein 1 (Nuclear factor| with BRCT domains 1) Length = 2089 Score = 29.3 bits (64), Expect = 2.7 Identities = 20/56 (35%), Positives = 26/56 (46%) Frame = +1 Query: 16 NTLRRCRPRRLHFAAEETCQIPSIAPPRPTCGSAPRCLCGGLSVAAPRNPRTPEPR 183 + L R R RRL E P + PP P G C CGG + P PR+ +P+ Sbjct: 1985 DALSRARERRL-LEGYEIYVTPGVQPPPPQMGEIISC-CGGTYL--PSMPRSYKPQ 2036
>MDC1_MACMU (Q5TM68) Mediator of DNA damage checkpoint protein 1| Length = 2173 Score = 29.3 bits (64), Expect = 2.7 Identities = 20/56 (35%), Positives = 26/56 (46%) Frame = +1 Query: 16 NTLRRCRPRRLHFAAEETCQIPSIAPPRPTCGSAPRCLCGGLSVAAPRNPRTPEPR 183 + L R R RRL E P + PP P G C CGG + P PR+ +P+ Sbjct: 2069 DALSRARERRL-LEGYEIYVTPGVQPPPPQMGEIISC-CGGTYL--PSMPRSYKPQ 2120
>MDC1_PANTR (Q7YR40) Mediator of DNA damage checkpoint protein 1| Length = 2171 Score = 29.3 bits (64), Expect = 2.7 Identities = 20/56 (35%), Positives = 26/56 (46%) Frame = +1 Query: 16 NTLRRCRPRRLHFAAEETCQIPSIAPPRPTCGSAPRCLCGGLSVAAPRNPRTPEPR 183 + L R R RRL E P + PP P G C CGG + P PR+ +P+ Sbjct: 2067 DALSRARERRL-LEGYEIYVTPGVQPPPPQMGEIISC-CGGTYL--PSMPRSYKPQ 2118
>SPN1_CHICK (Q5ZI43) Snurportin-1 (RNA U transporter 1)| Length = 365 Score = 29.3 bits (64), Expect = 2.7 Identities = 11/25 (44%), Positives = 16/25 (64%) Frame = +1 Query: 127 LCGGLSVAAPRNPRTPEPRTARVSG 201 L GG+++AAP +P P PR + G Sbjct: 8 LAGGVALAAPNSPAAPHPRLSAYKG 32
>BRPF3_HUMAN (Q9ULD4) Bromodomain and PHD finger-containing protein 3| Length = 1205 Score = 28.5 bits (62), Expect = 4.5 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%) Frame = -1 Query: 227 GHGRQQAASPETRAVRG-SGVLGFRGAATLSPPQRHRGALPHVGRGGAIEGI 75 G G+ + ++ G SG L F + L+PP+R RG P + R +EG+ Sbjct: 1001 GFGKHTESGSDSECSLGLSGGLAFEACSGLTPPKRSRGK-PALSRVPFLEGV 1051
>HNRPQ_MOUSE (Q7TMK9) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) (pp68) Length = 623 Score = 28.5 bits (62), Expect = 4.5 Identities = 17/31 (54%), Positives = 17/31 (54%) Frame = -1 Query: 182 RGSGVLGFRGAATLSPPQRHRGALPHVGRGG 90 RG G G RGAA P R RGA P GR G Sbjct: 496 RGRGGRGARGAA----PSRGRGAAPPRGRAG 522
>HNRPQ_HUMAN (O60506) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) Length = 623 Score = 28.5 bits (62), Expect = 4.5 Identities = 17/31 (54%), Positives = 17/31 (54%) Frame = -1 Query: 182 RGSGVLGFRGAATLSPPQRHRGALPHVGRGG 90 RG G G RGAA P R RGA P GR G Sbjct: 496 RGRGGRGARGAA----PSRGRGAAPPRGRAG 522
>RNB_HHV11 (P04487) RNA-binding protein (Vmw21)| Length = 161 Score = 28.5 bits (62), Expect = 4.5 Identities = 18/37 (48%), Positives = 19/37 (51%), Gaps = 1/37 (2%) Frame = +1 Query: 91 PPRPTCGSAPRCLCGGLSVAAPRNPRTP-EPRTARVS 198 P +P PR S PR PRTP EPRTAR S Sbjct: 124 PRQPRSPREPRSPREPRSPREPRTPRTPREPRTARGS 160
>ECEL1_MOUSE (Q9JMI0) Endothelin-converting enzyme-like 1 (EC 3.4.24.-) (Xce| protein) (Damage-induced neuronal endopeptidase) Length = 775 Score = 28.5 bits (62), Expect = 4.5 Identities = 15/32 (46%), Positives = 18/32 (56%) Frame = -1 Query: 296 YILRQSTAG*RGTSVPHSLRRPRGHGRQQAAS 201 Y+ R T G RGTS+P PRG GR + S Sbjct: 19 YVSRCGTGGARGTSLPPGF--PRGSGRSASGS 48
>P73L_RAT (Q9JJP6) Tumor protein p73-like (p73L) (p63)| (Transformation-related protein 63) (TP63) (Keratinocyte transcription factor KET) Length = 680 Score = 28.5 bits (62), Expect = 4.5 Identities = 17/45 (37%), Positives = 20/45 (44%) Frame = -1 Query: 260 TSVPHSLRRPRGHGRQQAASPETRAVRGSGVLGFRGAATLSPPQR 126 +S PH LR P G S ETR R + F T+S P R Sbjct: 611 SSPPHLLRTPSGASTVSVGSSETRGERVIDAVRFTLRQTISFPPR 655
>P73L_MOUSE (O88898) Tumor protein p73-like (p73L) (p63)| (Transformation-related protein 63) Length = 680 Score = 28.5 bits (62), Expect = 4.5 Identities = 17/45 (37%), Positives = 20/45 (44%) Frame = -1 Query: 260 TSVPHSLRRPRGHGRQQAASPETRAVRGSGVLGFRGAATLSPPQR 126 +S PH LR P G S ETR R + F T+S P R Sbjct: 611 SSPPHLLRTPSGASTVSVGSSETRGERVIDAVRFTLRQTISFPPR 655
>HNRPQ_RAT (Q7TP47) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Liver regeneration-related protein LRRG077) Length = 533 Score = 28.5 bits (62), Expect = 4.5 Identities = 17/31 (54%), Positives = 17/31 (54%) Frame = -1 Query: 182 RGSGVLGFRGAATLSPPQRHRGALPHVGRGG 90 RG G G RGAA P R RGA P GR G Sbjct: 406 RGRGGRGARGAA----PSRGRGAAPPRGRAG 432
>GRISA_PODAN (Q92258) GRISEA protein (MAC1 homolog)| Length = 597 Score = 28.1 bits (61), Expect = 5.9 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 4/39 (10%) Frame = +1 Query: 64 ETCQIPSIAPPRP--TCGSAPR--CLCGGLSVAAPRNPR 168 E +P P RP TC P C+CGG+ VA P+ + Sbjct: 28 ERVMVPVRKPGRPLSTCPCPPGKPCVCGGVRVAIPKKQK 66
>CVP1_PIMHY (Q8T0W5) Cysteine-rich venom protein 1 precursor| Length = 85 Score = 28.1 bits (61), Expect = 5.9 Identities = 11/35 (31%), Positives = 15/35 (42%) Frame = +1 Query: 31 CRPRRLHFAAEETCQIPSIAPPRPTCGSAPRCLCG 135 C P R++ C P+ P P C P+C G Sbjct: 29 CEPNRIYKTCGPACP-PTCEDPDPDCNETPQCKAG 62
>NOTC1_RAT (Q07008) Neurogenic locus notch homolog protein 1 precursor (Notch 1)| [Contains: Notch 1 extracellular truncation; Notch 1 intracellular domain] Length = 2531 Score = 27.7 bits (60), Expect = 7.8 Identities = 12/21 (57%), Positives = 15/21 (71%) Frame = +1 Query: 103 TCGSAPRCLCGGLSVAAPRNP 165 TCGS RCL GG ++ PR+P Sbjct: 1351 TCGSL-RCLNGGTCISGPRSP 1370
>NOTC1_MOUSE (Q01705) Neurogenic locus notch homolog protein 1 precursor (Notch 1)| (Motch A) (mT14) (p300) [Contains: Notch 1 extracellular truncation; Notch 1 intracellular domain] Length = 2531 Score = 27.7 bits (60), Expect = 7.8 Identities = 12/21 (57%), Positives = 15/21 (71%) Frame = +1 Query: 103 TCGSAPRCLCGGLSVAAPRNP 165 TCGS RCL GG ++ PR+P Sbjct: 1351 TCGSL-RCLNGGTCISGPRSP 1370
>PAIR1_ORYSA (Q75RY2) Protein PAIR1 (HOMOLOGOUS PAIRING ABERRATION IN RICE| MEIOSIS 1 protein) Length = 492 Score = 27.7 bits (60), Expect = 7.8 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%) Frame = +1 Query: 64 ETCQIPSIA--PPRPTCGSAPRCLCGGLSVAAPRNPRT 171 + C I SI+ PPR T GS+ G ++VA PR+ Sbjct: 7 KACDIASISVLPPRRTGGSSGASASGSVAVAVASQPRS 44
>NOTC1_HUMAN (P46531) Neurogenic locus notch homolog protein 1 precursor (Notch 1)| (hN1) (Translocation-associated notch protein TAN-1) [Contains: Notch 1 extracellular truncation; Notch 1 intracellular domain] Length = 2556 Score = 27.7 bits (60), Expect = 7.8 Identities = 12/21 (57%), Positives = 15/21 (71%) Frame = +1 Query: 103 TCGSAPRCLCGGLSVAAPRNP 165 TCGS RCL GG ++ PR+P Sbjct: 1352 TCGSL-RCLNGGTCISGPRSP 1371
>MDC1_PIG (Q767L8) Mediator of DNA damage checkpoint protein 1| Length = 2042 Score = 27.7 bits (60), Expect = 7.8 Identities = 19/54 (35%), Positives = 24/54 (44%) Frame = +1 Query: 22 LRRCRPRRLHFAAEETCQIPSIAPPRPTCGSAPRCLCGGLSVAAPRNPRTPEPR 183 L R R R+L E P + PP P G C CGG P PR+ +P+ Sbjct: 1940 LSRARERKL-LEGYEIHVTPGVQPPPPQMGEIISC-CGG--TVLPSMPRSYKPQ 1989 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 37,246,203 Number of Sequences: 219361 Number of extensions: 625762 Number of successful extensions: 3303 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 3055 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3299 length of database: 80,573,946 effective HSP length: 74 effective length of database: 64,341,232 effective search space used: 1544189568 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
