ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl18d03 |
|---|---|
| Clone Library Name | barley_pub |
>STAG3_RAT (Q99M76) Cohesin subunit SA-3 (Stromal antigen 3) (Stromalin 3)| (SCC3 homolog 3) Length = 1256 Score = 107 bits (267), Expect = 1e-23 Identities = 59/154 (38%), Positives = 88/154 (57%), Gaps = 3/154 (1%) Frame = +2 Query: 2 FWDRLVLECQNGPLFDDNLFTTIKDYVVAISCTPPRVYRQVASLVGLQLVTSFISVAKTL 181 F LV +CQ LFD + ++ +S + R +R ++L ++L+TS + VA L Sbjct: 209 FVKTLVCQCQYSLLFDGFPMDDLISLLIGLSDSQVRAFRHTSTLAAMKLMTSLVKVALQL 268 Query: 182 SGQRETTQRQLNAEKKKKSDGPA---VESLNKRLSITHENITYLEESMRKIFSGLFMHRY 352 S ++ QRQ AE+ K + A +ESL ++ EN +E M IF G+F+HRY Sbjct: 269 SLHKDNNQRQYEAERNKGPEQRAPERLESLLEKRKEFQENQEEIEGMMNAIFRGVFVHRY 328 Query: 353 RDVDPEIRMLCIKSLGIWVVSYPSLFLQDIYLKY 454 RD+ PEIR +CI+ +G W+ SY + FL D YLKY Sbjct: 329 RDILPEIRAVCIEEIGCWMQSYSTSFLNDSYLKY 362
>STAG1_MOUSE (Q9D3E6) Cohesin subunit SA-1 (Stromal antigen 1) (SCC3 homolog 1)| Length = 1258 Score = 107 bits (266), Expect = 2e-23 Identities = 53/150 (35%), Positives = 86/150 (57%), Gaps = 3/150 (2%) Frame = +2 Query: 14 LVLECQNGPLFDDNLFTTIKDYVVAISCTPPRVYRQVASLVGLQLVTSFISVAKTLSGQR 193 L+ +CQ ++D+ + T+ + +S + R +R ++L ++L+T+ ++VA LS + Sbjct: 185 LIRQCQYSIIYDEYMMDTVISLLTGLSDSQVRAFRHTSTLAAMKLMTALVNVALNLSIHQ 244 Query: 194 ETTQRQLNAEKKK---KSDGPAVESLNKRLSITHENITYLEESMRKIFSGLFMHRYRDVD 364 + TQRQ AE+ K K +E L ++ EN +E M IF G+F+HRYRD Sbjct: 245 DNTQRQYEAERNKMIGKRANERLELLLQKRKELQENQDEIENMMNSIFKGIFVHRYRDAI 304 Query: 365 PEIRMLCIKSLGIWVVSYPSLFLQDIYLKY 454 EIR +CI+ +G+W+ Y FL D YLKY Sbjct: 305 AEIRAICIEEIGVWMKMYSDAFLNDSYLKY 334
>STAG1_HUMAN (Q8WVM7) Cohesin subunit SA-1 (Stromal antigen 1) (SCC3 homolog 1)| Length = 1258 Score = 107 bits (266), Expect = 2e-23 Identities = 53/150 (35%), Positives = 86/150 (57%), Gaps = 3/150 (2%) Frame = +2 Query: 14 LVLECQNGPLFDDNLFTTIKDYVVAISCTPPRVYRQVASLVGLQLVTSFISVAKTLSGQR 193 L+ +CQ ++D+ + T+ + +S + R +R ++L ++L+T+ ++VA LS + Sbjct: 185 LIRQCQYSIIYDEYMMDTVISLLTGLSDSQVRAFRHTSTLAAMKLMTALVNVALNLSIHQ 244 Query: 194 ETTQRQLNAEKKK---KSDGPAVESLNKRLSITHENITYLEESMRKIFSGLFMHRYRDVD 364 + TQRQ AE+ K K +E L ++ EN +E M IF G+F+HRYRD Sbjct: 245 DNTQRQYEAERNKMIGKRANERLELLLQKRKELQENQDEIENMMNSIFKGIFVHRYRDAI 304 Query: 365 PEIRMLCIKSLGIWVVSYPSLFLQDIYLKY 454 EIR +CI+ +G+W+ Y FL D YLKY Sbjct: 305 AEIRAICIEEIGVWMKMYSDAFLNDSYLKY 334
>STAG3_MOUSE (O70576) Cohesin subunit SA-3 (Stromal antigen 3) (Stromalin 3)| (SCC3 homolog 3) Length = 1240 Score = 106 bits (264), Expect = 3e-23 Identities = 58/154 (37%), Positives = 88/154 (57%), Gaps = 3/154 (1%) Frame = +2 Query: 2 FWDRLVLECQNGPLFDDNLFTTIKDYVVAISCTPPRVYRQVASLVGLQLVTSFISVAKTL 181 F LV +CQ L+D + ++ +S + R +R ++L ++L+TS + VA L Sbjct: 209 FVKTLVYQCQYSLLYDGFPMDDLISLLIGLSDSQVRAFRHTSTLAAMKLMTSLVKVALQL 268 Query: 182 SGQRETTQRQLNAEKKKKSDGPA---VESLNKRLSITHENITYLEESMRKIFSGLFMHRY 352 S ++ QRQ AE+ K + A +ESL ++ EN +E M IF G+F+HRY Sbjct: 269 SLHKDNNQRQYEAERNKGPEQRAPERLESLLEKRKEFQENQEDIEGMMNAIFRGVFVHRY 328 Query: 353 RDVDPEIRMLCIKSLGIWVVSYPSLFLQDIYLKY 454 RD+ PEIR +CI+ +G W+ SY + FL D YLKY Sbjct: 329 RDILPEIRAICIEEIGYWMQSYSTSFLNDSYLKY 362
>STAG2_HUMAN (Q8N3U4) Cohesin subunit SA-2 (Stromal antigen 2) (SCC3 homolog 2)| Length = 1231 Score = 106 bits (264), Expect = 3e-23 Identities = 55/150 (36%), Positives = 85/150 (56%), Gaps = 3/150 (2%) Frame = +2 Query: 14 LVLECQNGPLFDDNLFTTIKDYVVAISCTPPRVYRQVASLVGLQLVTSFISVAKTLSGQR 193 LV +CQ ++D+ + T+ + +S + R +R ++L ++L+T+ ++VA LS Sbjct: 182 LVRQCQYSIIYDEYMMDTVISLLTGLSDSQVRAFRHTSTLAAMKLMTALVNVALNLSINM 241 Query: 194 ETTQRQLNAEKKK---KSDGPAVESLNKRLSITHENITYLEESMRKIFSGLFMHRYRDVD 364 + TQRQ AE+ K K +E L ++ EN +E M IF G+F+HRYRD Sbjct: 242 DNTQRQYEAERNKMIGKRANERLELLLQKRKELQENQDEIENMMNAIFKGVFVHRYRDAI 301 Query: 365 PEIRMLCIKSLGIWVVSYPSLFLQDIYLKY 454 EIR +CI+ +GIW+ Y FL D YLKY Sbjct: 302 AEIRAICIEEIGIWMKMYSDAFLNDSYLKY 331
>STAG2_XENLA (Q9DGN0) Cohesin subunit SA-2 (xSA-2) (Stromal antigen 2 homolog)| (SCC3 homolog 2) Length = 1194 Score = 105 bits (263), Expect = 4e-23 Identities = 54/150 (36%), Positives = 85/150 (56%), Gaps = 3/150 (2%) Frame = +2 Query: 14 LVLECQNGPLFDDNLFTTIKDYVVAISCTPPRVYRQVASLVGLQLVTSFISVAKTLSGQR 193 LV +CQ ++D+ + T+ + +S + R +R ++L ++L+T+ ++VA LS Sbjct: 113 LVRQCQYSIIYDEYMMDTVISLLTGLSDSQVRAFRHTSTLAAMKLMTALVNVALNLSINM 172 Query: 194 ETTQRQLNAEKKK---KSDGPAVESLNKRLSITHENITYLEESMRKIFSGLFMHRYRDVD 364 + TQRQ AE+ K K +E L ++ EN +E M IF G+F+HRYRD Sbjct: 173 DNTQRQYEAERNKMIGKRANDRLELLLQKRKELQENQDEIENMMNAIFKGVFVHRYRDAI 232 Query: 365 PEIRMLCIKSLGIWVVSYPSLFLQDIYLKY 454 EIR +CI+ +G+W+ Y FL D YLKY Sbjct: 233 AEIRAICIEEIGVWMKMYSDAFLNDSYLKY 262
>STAG1_XENLA (Q9DGN1) Cohesin subunit SA-1 (xSA-1) (Stromal antigen 1 homolog)| (SCC3 homolog 1) Length = 1265 Score = 105 bits (262), Expect = 5e-23 Identities = 52/150 (34%), Positives = 85/150 (56%), Gaps = 3/150 (2%) Frame = +2 Query: 14 LVLECQNGPLFDDNLFTTIKDYVVAISCTPPRVYRQVASLVGLQLVTSFISVAKTLSGQR 193 L+ +CQ ++D+ + T+ + +S + R +R ++L ++L+T+ ++VA LS + Sbjct: 192 LIRQCQYSIIYDEYMMDTVISLLTGLSDSQVRAFRHTSTLAAMKLMTALVNVALNLSIHQ 251 Query: 194 ETTQRQLNAEKKK---KSDGPAVESLNKRLSITHENITYLEESMRKIFSGLFMHRYRDVD 364 + TQRQ E+ K K +E L ++ EN +E M IF G+F+HRYRD Sbjct: 252 DNTQRQYETERNKIINKRANERLELLLQKRKELQENQDEIENMMNSIFKGIFVHRYRDAI 311 Query: 365 PEIRMLCIKSLGIWVVSYPSLFLQDIYLKY 454 EIR +CI+ +G+W+ Y FL D YLKY Sbjct: 312 AEIRAICIEEIGVWMKMYSDAFLNDSYLKY 341
>STAG2_MOUSE (O35638) Cohesin subunit SA-2 (Stromal antigen 2) (SCC3 homolog 2)| Length = 1231 Score = 102 bits (255), Expect = 3e-22 Identities = 54/150 (36%), Positives = 84/150 (56%), Gaps = 3/150 (2%) Frame = +2 Query: 14 LVLECQNGPLFDDNLFTTIKDYVVAISCTPPRVYRQVASLVGLQLVTSFISVAKTLSGQR 193 LV +CQ ++D+ + T+ + +S + R +R ++L ++L+T+ ++VA LS Sbjct: 182 LVRQCQYSIIYDEYMMDTVISLLTGLSDSQVRAFRHTSTLAAMKLMTALVNVALNLSINM 241 Query: 194 ETTQRQLNAEKKK---KSDGPAVESLNKRLSITHENITYLEESMRKIFSGLFMHRYRDVD 364 + TQRQ AE+ K K +E L ++ EN +E M IF G+F+HRYR Sbjct: 242 DNTQRQYEAERNKMIGKRANERLELLLQKRKELQENQDEIENMMNAIFKGVFVHRYRYAI 301 Query: 365 PEIRMLCIKSLGIWVVSYPSLFLQDIYLKY 454 EIR +CI+ +GIW+ Y FL D YLKY Sbjct: 302 AEIRAICIEEIGIWMKMYSDAFLNDSYLKY 331
>STAG3_HUMAN (Q9UJ98) Cohesin subunit SA-3 (Stromal antigen 3) (Stromalin 3)| (SCC3 homolog 3) Length = 1225 Score = 101 bits (252), Expect = 8e-22 Identities = 56/150 (37%), Positives = 85/150 (56%), Gaps = 3/150 (2%) Frame = +2 Query: 14 LVLECQNGPLFDDNLFTTIKDYVVAISCTPPRVYRQVASLVGLQLVTSFISVAKTLSGQR 193 LV +CQ L+D + + +S + R +R ++L ++L+TS + VA LS + Sbjct: 198 LVCQCQYSLLYDGFPMDDLISLLTGLSDSQVRAFRHTSTLAAMKLMTSLVKVALQLSVHQ 257 Query: 194 ETTQRQLNAEKKKKSDGPA---VESLNKRLSITHENITYLEESMRKIFSGLFMHRYRDVD 364 + QRQ AE+ K A +ESL ++ E+ +E M +F G+F+HRYRDV Sbjct: 258 DNNQRQYEAERNKGPGQRAPERLESLLEKRKELQEHQEEIEGMMNALFRGVFVHRYRDVL 317 Query: 365 PEIRMLCIKSLGIWVVSYPSLFLQDIYLKY 454 PEIR +CI+ +G W+ SY + FL D YLKY Sbjct: 318 PEIRAICIEEIGCWMQSYSTSFLTDSYLKY 347
>SCC3_SCHPO (O13816) Cohesin subunit psc3 (SCC3 homolog)| Length = 962 Score = 82.4 bits (202), Expect = 5e-16 Identities = 43/139 (30%), Positives = 75/139 (53%), Gaps = 1/139 (0%) Frame = +2 Query: 41 LFDDNLFTTIKDYVVAISCTPPRVYRQVASLVGLQLVTSFISVAKTLSGQRETTQRQLNA 220 L++ +F I +VVA+S + R R A++ L ++T +K L + +QL Sbjct: 197 LYNSTVFEDIMSWVVAMSSSTMRPIRHTATVFCLNIMTFLCEKSKELLNEHAIATKQLEK 256 Query: 221 EKKK-KSDGPAVESLNKRLSITHENITYLEESMRKIFSGLFMHRYRDVDPEIRMLCIKSL 397 E+K+ + + + LN L + L + F +F+HRYRDV+P+IR+ C++ L Sbjct: 257 EEKRSRVNRNRINELNNSLGEIVKQQDTLTTYLNDYFDSVFVHRYRDVEPKIRVDCLQEL 316 Query: 398 GIWVVSYPSLFLQDIYLKY 454 G+W+ + PS+F YL+Y Sbjct: 317 GVWINTVPSIFFSGSYLRY 335
>SCC3_YEAST (P40541) Cohesin subunit SCC3 (Irregular cell behavior protein 1)| Length = 1150 Score = 53.5 bits (127), Expect = 2e-07 Identities = 36/137 (26%), Positives = 65/137 (47%), Gaps = 3/137 (2%) Frame = +2 Query: 53 NLFTTIKDYVVAISCTPPRVYRQVASLVGLQLVTSFIS--VAKTLSGQRETTQRQLNAE- 223 NL + ++ + S R +R +++L L L +++ +QL+ E Sbjct: 270 NLVLDLLTWLSSFSVCKIRCFRYISTLT-LYLFQDYLTQQAVNLEKNYLAKLSKQLSLEE 328 Query: 224 KKKKSDGPAVESLNKRLSITHENITYLEESMRKIFSGLFMHRYRDVDPEIRMLCIKSLGI 403 KKK+ + +E L ++ T + ++ + I F+HRY+DV IR + L I Sbjct: 329 KKKRPNNKTLEKLESTIAETQGSKVVIDSIIDNIVKLCFVHRYKDVSDLIRSESMLHLSI 388 Query: 404 WVVSYPSLFLQDIYLKY 454 W+ +YP FL+ +LKY Sbjct: 389 WIKNYPEYFLKVTFLKY 405
>TPM3_CAEEL (Q27249) Tropomyosin isoform 3| Length = 256 Score = 33.1 bits (74), Expect = 0.33 Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 1/57 (1%) Frame = +2 Query: 170 AKTLSGQRETTQRQLNAEKKKKSDGPA-VESLNKRLSITHENITYLEESMRKIFSGL 337 A+ + + +RQL E+KK+ D A V +LN+R+ + E++ E+ ++ S L Sbjct: 29 AEAAKDEADEVKRQLEEERKKREDAEAEVAALNRRIVLVEEDLERTEDRLKTATSKL 85
>KPC1_YEAST (P24583) Protein kinase C-like 1 (EC 2.7.11.13) (PKC 1)| Length = 1151 Score = 30.8 bits (68), Expect = 1.7 Identities = 14/44 (31%), Positives = 25/44 (56%) Frame = +2 Query: 194 ETTQRQLNAEKKKKSDGPAVESLNKRLSITHENITYLEESMRKI 325 E R +A KKK S+ ++ N + +N+ YLE+S++K+ Sbjct: 18 ENIIRGASALKKKTSNVMVIQKCNTNIREARQNLEYLEDSLKKL 61
>IF2_LEGPL (Q5WT36) Translation initiation factor IF-2| Length = 868 Score = 30.4 bits (67), Expect = 2.2 Identities = 23/87 (26%), Positives = 42/87 (48%) Frame = +2 Query: 116 RQVASLVGLQLVTSFISVAKTLSGQRETTQRQLNAEKKKKSDGPAVESLNKRLSITHENI 295 +Q+A +VG+ V ++ + Q+ +N E+K+ S N+ +S E I Sbjct: 7 KQLAQVVGIP-VERLLNQLQEAGLSFTDDQQTVNEEQKRILLNHLKGSSNRDISAAPERI 65 Query: 296 TYLEESMRKIFSGLFMHRYRDVDPEIR 376 T +SM ++ G MH + V+ E+R Sbjct: 66 TLRRKSMSQVTVGHDMHSGKTVNIEVR 92
>IF2_LEGPH (Q5ZRV4) Translation initiation factor IF-2| Length = 868 Score = 30.4 bits (67), Expect = 2.2 Identities = 23/87 (26%), Positives = 42/87 (48%) Frame = +2 Query: 116 RQVASLVGLQLVTSFISVAKTLSGQRETTQRQLNAEKKKKSDGPAVESLNKRLSITHENI 295 +Q+A +VG+ V ++ + Q+ +N E+K+ S N+ +S E I Sbjct: 7 KQLAQVVGIP-VERLLNQLQEAGLSFTDDQQTVNEEQKRILLNHLKGSSNRDISAAPERI 65 Query: 296 TYLEESMRKIFSGLFMHRYRDVDPEIR 376 T +SM ++ G MH + V+ E+R Sbjct: 66 TLRRKSMSQVTVGHDMHSGKTVNIEVR 92
>IF2_LEGPA (Q5X1C3) Translation initiation factor IF-2| Length = 868 Score = 30.4 bits (67), Expect = 2.2 Identities = 23/87 (26%), Positives = 42/87 (48%) Frame = +2 Query: 116 RQVASLVGLQLVTSFISVAKTLSGQRETTQRQLNAEKKKKSDGPAVESLNKRLSITHENI 295 +Q+A +VG+ V ++ + Q+ +N E+K+ S N+ +S E I Sbjct: 7 KQLAQVVGIP-VERLLNQLQEAGLSFTDDQQTVNEEQKRILLNHLKGSSNRDISAAPERI 65 Query: 296 TYLEESMRKIFSGLFMHRYRDVDPEIR 376 T +SM ++ G MH + V+ E+R Sbjct: 66 TLRRKSMSQVTVGHDMHSGKTVNIEVR 92
>EPHB1_RAT (P09759) Ephrin type-B receptor 1 precursor (EC 2.7.10.1)| (Tyrosine-protein kinase receptor EPH-2) (ELK) Length = 984 Score = 30.4 bits (67), Expect = 2.2 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 5/74 (6%) Frame = +2 Query: 47 DDNLFTTIKDYVVAISCTPPRVYRQVASLVGLQLVTSFIS-----VAKTLSGQRETTQRQ 211 D FTT+ D++ AI R A LQLVT S + TL+G ++ Sbjct: 909 DFTAFTTVDDWLSAIKMVQYRDSFLTAGFTSLQLVTQMTSEDLLRIGVTLAGHQKKILSS 968 Query: 212 LNAEKKKKSDGPAV 253 +++ + + + P+V Sbjct: 969 IHSMRVQMNQSPSV 982
>AT2B1_PIG (P23220) Plasma membrane calcium-transporting ATPase 1 (EC 3.6.3.8)| (PMCA1) (Plasma membrane calcium pump isoform 1) Length = 1220 Score = 30.0 bits (66), Expect = 2.8 Identities = 16/51 (31%), Positives = 23/51 (45%) Frame = +2 Query: 116 RQVASLVGLQLVTSFISVAKTLSGQRETTQRQLNAEKKKKSDGPAVESLNK 268 R V + VG+ T I G+ E + + EKK K A+E+ NK Sbjct: 272 RMVVTAVGINSQTGIIFTLLGAGGEEEEKKDEKKKEKKNKKQDGAIENRNK 322
>AT2B1_RABIT (Q00804) Plasma membrane calcium-transporting ATPase 1 (EC 3.6.3.8)| (PMCA1) (Plasma membrane calcium pump isoform 1) Length = 1249 Score = 29.6 bits (65), Expect = 3.7 Identities = 16/51 (31%), Positives = 23/51 (45%) Frame = +2 Query: 116 RQVASLVGLQLVTSFISVAKTLSGQRETTQRQLNAEKKKKSDGPAVESLNK 268 R V + VG+ T I G+ E + + EKK K A+E+ NK Sbjct: 272 RMVVTAVGVNSQTGIIFTLLGAGGEEEEKKDEKKKEKKNKKQDGAIENRNK 322
>AT2B1_RAT (P11505) Plasma membrane calcium-transporting ATPase 1 (EC 3.6.3.8)| (PMCA1) (Plasma membrane calcium pump isoform 1) (Plasma membrane calcium ATPase isoform 1) Length = 1258 Score = 29.6 bits (65), Expect = 3.7 Identities = 16/51 (31%), Positives = 23/51 (45%) Frame = +2 Query: 116 RQVASLVGLQLVTSFISVAKTLSGQRETTQRQLNAEKKKKSDGPAVESLNK 268 R V + VG+ T I G+ E + + EKK K A+E+ NK Sbjct: 272 RMVVTAVGVNSQTGIIFTLLGAGGEEEEKKDEKKKEKKNKKQDGAIENRNK 322
>AT2B1_HUMAN (P20020) Plasma membrane calcium-transporting ATPase 1 (EC 3.6.3.8)| (PMCA1) (Plasma membrane calcium pump isoform 1) (Plasma membrane calcium ATPase isoform 1) Length = 1258 Score = 29.6 bits (65), Expect = 3.7 Identities = 16/51 (31%), Positives = 23/51 (45%) Frame = +2 Query: 116 RQVASLVGLQLVTSFISVAKTLSGQRETTQRQLNAEKKKKSDGPAVESLNK 268 R V + VG+ T I G+ E + + EKK K A+E+ NK Sbjct: 272 RMVVTAVGVNSQTGIIFTLLGAGGEEEEKKDEKKKEKKNKKQDGAIENRNK 322
>BACC_BACLI (O68008) Bacitracin synthetase 3 (BA3) [Includes: ATP-dependent| isoleucine adenylase (IleA) (Isoleucine activase); ATP-dependent D-phenylalanine adenylase (D-PheA) (D-phenylalanine activase); ATP-dependent histidine adenylase (HisA) (Histidine Length = 6359 Score = 29.6 bits (65), Expect = 3.7 Identities = 14/36 (38%), Positives = 19/36 (52%) Frame = +3 Query: 6 GIDWSLSVRMVRYLMITYSRQSRITWLLYHVLPQGF 113 G D S V M YL+ T R R+ W +H+L G+ Sbjct: 2650 GFDLSKDVLMRAYLLKTAERSYRLVWSHHHILLDGW 2685
>EPHB1_HUMAN (P54762) Ephrin type-B receptor 1 precursor (EC 2.7.10.1)| (Tyrosine-protein kinase receptor EPH-2) (NET) (HEK6) (ELK) Length = 984 Score = 28.9 bits (63), Expect = 6.3 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 5/72 (6%) Frame = +2 Query: 47 DDNLFTTIKDYVVAISCTPPRVYRQVASLVGLQLVTSFIS-----VAKTLSGQRETTQRQ 211 D FTT+ D++ AI R A LQLVT S + TL+G ++ Sbjct: 909 DFTAFTTVDDWLSAIKMVQYRDSFLTAGFTSLQLVTQMTSEDLLRIGITLAGHQKKILNS 968 Query: 212 LNAEKKKKSDGP 247 +++ + + S P Sbjct: 969 IHSMRVQISQSP 980
>TOP3A_MOUSE (O70157) DNA topoisomerase 3-alpha (EC 5.99.1.2) (DNA topoisomerase| III alpha) Length = 1003 Score = 28.5 bits (62), Expect = 8.2 Identities = 12/32 (37%), Positives = 17/32 (53%) Frame = +2 Query: 23 ECQNGPLFDDNLFTTIKDYVVAISCTPPRVYR 118 EC++ F D++ +D V C PP VYR Sbjct: 684 ECRSAVWFPDSVLEASRDNSVCSVCQPPPVYR 715
>COA2_SV40 (P03093) Coat protein VP2 [Contains: Coat protein VP3]| Length = 351 Score = 28.5 bits (62), Expect = 8.2 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 1/70 (1%) Frame = +2 Query: 53 NLFTTIKDYVVAISCTPPRVYRQVASLVGLQLVTSFISVAKTLSGQRETTQRQLNAEK-K 229 N + +++DY +S P + RQVA+ GLQ IS T E Q E+ + Sbjct: 208 NWYNSLQDYYSTLSPIRPTMVRQVANREGLQ-----ISFGHTYDNIDEADSIQQVTERWE 262 Query: 230 KKSDGPAVES 259 +S P V+S Sbjct: 263 AQSQSPNVQS 272
>CING_HUMAN (Q9P2M7) Cingulin| Length = 1197 Score = 28.5 bits (62), Expect = 8.2 Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 1/86 (1%) Frame = +2 Query: 140 LQLVTSFISVAKTLSGQRETTQRQLNAEKKKKSDGPAVESLNKRLSITHENITYLE-ESM 316 LQL + + L + E QR+L + D VE L K L T E + L+ E Sbjct: 584 LQLRMEKEEMEEELGEKIEVLQRELEQARASAGDTRQVEVLKKELLRTQEELKELQAERQ 643 Query: 317 RKIFSGLFMHRYRDVDPEIRMLCIKS 394 + +G HR R+++ ++ +L +++ Sbjct: 644 SQEVAG--RHRDRELEKQLAVLRVEA 667 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 63,265,640 Number of Sequences: 219361 Number of extensions: 1168165 Number of successful extensions: 2726 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 2645 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2722 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2793557952 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
