ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl18c08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|M55604.1|WHTUBA1 T.aestivum ubiquitin activating enzyme E1 (U... 105 4e-20
2gb|M90663.1|WHTE1A Wheat ubiquitin activating enzyme (E1) mRNA, ... 90 3e-15
3gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome 46 0.035
4gb|AY232997.1| Pseudomonas aeruginosa PcrG (pcrG), PcrV (pcrV), ... 44 0.14
5gb|AE004597.1| Pseudomonas aeruginosa PAO1, section 158 of 529 o... 44 0.14
6gb|AF035922.1|AF035922 Pseudomonas aeruginosa PepB and PepD gene... 44 0.14
7gb|AF010149.1|AF010149 Pseudomonas aeruginosa PcrG (pcrG), PcrV ... 44 0.14
8gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 42 0.54
9gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome 40 2.1
10emb|X69959.1|ACNTRA A.caulinodans NtrA gene for RNA polymerase s... 40 2.1
11gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome 40 2.1
12gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 40 2.1
13dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.1
14dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.1
15dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 2.1
16dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 40 2.1
17dbj|AP004784.3| Oryza sativa (japonica cultivar-group) genomic D... 40 2.1
18dbj|AP003871.3| Oryza sativa (japonica cultivar-group) genomic D... 40 2.1
19ref|XM_469962.1| Oryza sativa (japonica cultivar-group), mRNA 38 8.4
20gb|AC134344.2| Oryza sativa (japonica cultivar-group) chromosome... 38 8.4
21gb|AC136224.2| Oryza sativa (japonica cultivar-group) chromosome... 38 8.4
22gb|AC090871.11| Oryza sativa chromosome 3 BAC OSJNBb0060J21 geno... 38 8.4
23gb|DQ249341.1| Streptomyces hygroscopicus subsp. duamyceticus st... 38 8.4
24gb|AC099934.14| Mus musculus chromosome 12, clone RP23-17K9, com... 38 8.4
25gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 38 8.4
26gb|AC132290.3| Mus musculus BAC clone RP24-318H2 from chromosome... 38 8.4
27gb|AY098743.2| Oryza sativa (japonica cultivar-group) globulin-l... 38 8.4
28emb|AL939120.1|SCO939120 Streptomyces coelicolor A3(2) complete ... 38 8.4
29gb|AC161426.5| Mus musculus BAC clone RP23-69L13 from chromosome... 38 8.4
30dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 38 8.4
31gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, comple... 38 8.4
32gb|CP000249.1| Frankia sp. CcI3, complete genome 38 8.4
33gb|DQ346667.1| Rhodococcus sp. DK17 vanillate monooxygenase oxyg... 38 8.4
34dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 38 8.4
35dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 38 8.4
36gb|AC073618.48| Homo sapiens 12 BAC RP11-313E9 (Roswell Park Can... 38 8.4
37gb|AY179507.1| Streptomyces hygroscopicus strain NRRL 3602 gelda... 38 8.4
38ref|XM_576290.1| PREDICTED: Rattus norvegicus similar to FLJ4386... 38 8.4
39dbj|BA000002.2| Aeropyrum pernix K1 DNA, complete genome 38 8.4
40dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 38 8.4
41gb|AC009145.4|AC009145 Homo sapiens chromosome 16 clone RP11-556... 38 8.4
42dbj|AB116234.1| Streptomyces venezuelae papA, papC, papB, ORFIV ... 38 8.4
43gb|AE005077.1| Halobacterium sp. NRC-1 section 108 of 170 of the... 38 8.4
44dbj|AK121667.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 8.4
45dbj|AK108955.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 8.4
46gb|U45321.1|OSU45321 Oryza sativa globulin-like protein mRNA, cl... 38 8.4
47gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 38 8.4
48gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 38 8.4
49gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete... 38 8.4
50dbj|AB070940.1| Streptomyces avermitilis oligomycin biosynthetic... 38 8.4 
>gb|M55604.1|WHTUBA1 T.aestivum ubiquitin activating enzyme E1 (UBA1) gene, complete cds
          Length = 3586

 Score =  105 bits (53), Expect = 4e-20
 Identities = 77/85 (90%)
 Strand = Plus / Plus

                                                                       
Query: 23  tcgggctcatcggcggcgtcgcgcactatatgctccctcggaagcgggagatcgtcgcca 82
           |||||||| ||||||||||||||| ||||||||| || ||||||||||||||||||||| 
Sbjct: 154 tcgggctcctcggcggcgtcgcgcgctatatgcttccccggaagcgggagatcgtcgccg 213

                                    
Query: 83  gcgaggtcgagaaccagcagaagaa 107
           ||||||||||| ||  |||||||||
Sbjct: 214 gcgaggtcgaggacttgcagaagaa 238
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>gb|M90663.1|WHTE1A Wheat ubiquitin activating enzyme (E1) mRNA, complete cds
          Length = 3695

 Score = 89.7 bits (45), Expect = 3e-15
 Identities = 76/85 (89%), Gaps = 1/85 (1%)
 Strand = Plus / Plus

                                                                       
Query: 23  tcgggctcatcggcggcgtcgcgcactatatgctccctcggaagcgggagatcgtcgcca 82
           |||||||| |||||| |||||||| ||||||||| || ||||||||||||||||||||| 
Sbjct: 250 tcgggctcctcggcg-cgtcgcgcgctatatgcttccccggaagcgggagatcgtcgccg 308

                                    
Query: 83  gcgaggtcgagaaccagcagaagaa 107
           ||||||||||| ||  |||||||||
Sbjct: 309 gcgaggtcgaggacttgcagaagaa 333
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>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
          Length = 3345170

 Score = 46.1 bits (23), Expect = 0.035
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 4      ctgcttttcgcggcggcggtcgg 26
              |||||||||||||||||||||||
Sbjct: 272756 ctgcttttcgcggcggcggtcgg 272778
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>gb|AY232997.1| Pseudomonas aeruginosa PcrG (pcrG), PcrV (pcrV), PcrH (pcrH), PopB
            (popB), and PopD (popD) genes, complete cds
          Length = 4231

 Score = 44.1 bits (22), Expect = 0.14
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 83   gcgaggtcgagaaccagcagaagaaa 108
            |||| |||||||||||||||||||||
Sbjct: 2515 gcgaagtcgagaaccagcagaagaaa 2540
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>gb|AE004597.1| Pseudomonas aeruginosa PAO1, section 158 of 529 of the complete
            genome
          Length = 10052

 Score = 44.1 bits (22), Expect = 0.14
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 83   gcgaggtcgagaaccagcagaagaaa 108
            |||| |||||||||||||||||||||
Sbjct: 6919 gcgaagtcgagaaccagcagaagaaa 6944
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>gb|AF035922.1|AF035922 Pseudomonas aeruginosa PepB and PepD genes, complete cds; and ExsC
           gene, partial cds
          Length = 2688

 Score = 44.1 bits (22), Expect = 0.14
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 83  gcgaggtcgagaaccagcagaagaaa 108
           |||| |||||||||||||||||||||
Sbjct: 452 gcgaagtcgagaaccagcagaagaaa 477
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>gb|AF010149.1|AF010149 Pseudomonas aeruginosa PcrG (pcrG), PcrV (pcrV), PcrH (pcrH), PopB
            (popB) and PopD (popD) genes, complete cds
          Length = 4168

 Score = 44.1 bits (22), Expect = 0.14
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 83   gcgaggtcgagaaccagcagaagaaa 108
            |||| |||||||||||||||||||||
Sbjct: 2361 gcgaagtcgagaaccagcagaagaaa 2386
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 42.1 bits (21), Expect = 0.54
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 69      ggagatcgtcgccagcgaggt 89
               |||||||||||||||||||||
Sbjct: 5095484 ggagatcgtcgccagcgaggt 5095464



 Score = 38.2 bits (19), Expect = 8.4
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                         
Query: 69     ggagatcgtcgccagcgaggtcgagaa 95
              |||||||||||||  ||||||||||||
Sbjct: 404648 ggagatcgtcgccgccgaggtcgagaa 404674
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>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 3       cctgcttttcgcggcggcggtcgg 26
               ||||||| ||||||||||||||||
Sbjct: 3214943 cctgcttctcgcggcggcggtcgg 3214920
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>emb|X69959.1|ACNTRA A.caulinodans NtrA gene for RNA polymerase sigma factor
          Length = 2674

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 2    gcctgcttttcgcggcggcg 21
            ||||||||||||||||||||
Sbjct: 2429 gcctgcttttcgcggcggcg 2410
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>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 143     tggcagggaggcccacggagatcg 166
               |||||||| |||||||||||||||
Sbjct: 3995320 tggcagggcggcccacggagatcg 3995297
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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 3       cctgcttttcgcggcggcggtcgg 26
               ||||||| ||||||||||||||||
Sbjct: 4599415 cctgcttctcgcggcggcggtcgg 4599392
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 121      gacgccgacgacgccatggc 140
                ||||||||||||||||||||
Sbjct: 22103919 gacgccgacgacgccatggc 22103900
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 114      ccccgctgacgccgacgacg 133
                ||||||||||||||||||||
Sbjct: 13170622 ccccgctgacgccgacgacg 13170603
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 20      cggtcgggctcatcggcggc 39
               ||||||||||||||||||||
Sbjct: 2968702 cggtcgggctcatcggcggc 2968683



 Score = 38.2 bits (19), Expect = 8.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                      
Query: 124     gccgacgacgccatggccatggc 146
               ||||| |||||||||||||||||
Sbjct: 3627332 gccgaggacgccatggccatggc 3627354
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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 4       ctgcttttcgcggcggcggt 23
               ||||||||||||||||||||
Sbjct: 2131662 ctgcttttcgcggcggcggt 2131643
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>dbj|AP004784.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0012F14
          Length = 168629

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 114   ccccgctgacgccgacgacg 133
             ||||||||||||||||||||
Sbjct: 87810 ccccgctgacgccgacgacg 87791
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>dbj|AP003871.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1117_F10
          Length = 169948

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 121   gacgccgacgacgccatggc 140
             ||||||||||||||||||||
Sbjct: 66882 gacgccgacgacgccatggc 66863
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>ref|XM_469962.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1796

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 72   gatcgtcgccagcgaggtcgaga 94
            ||||||||||||||||| |||||
Sbjct: 1210 gatcgtcgccagcgagggcgaga 1232
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>gb|AC134344.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0059K16, complete sequence
          Length = 139615

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 13    gcggcggcggtcgggctca 31
             |||||||||||||||||||
Sbjct: 99555 gcggcggcggtcgggctca 99573
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>gb|AC136224.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0006B22, complete sequence
          Length = 166052

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 13    gcggcggcggtcgggctca 31
             |||||||||||||||||||
Sbjct: 18715 gcggcggcggtcgggctca 18733
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>gb|AC090871.11| Oryza sativa chromosome 3 BAC OSJNBb0060J21 genomic sequence, complete
             sequence
          Length = 162497

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 72    gatcgtcgccagcgaggtcgaga 94
             ||||||||||||||||| |||||
Sbjct: 25472 gatcgtcgccagcgagggcgaga 25450
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>gb|DQ249341.1| Streptomyces hygroscopicus subsp. duamyceticus strain JCM4427
             geldanamycin biosynthesis gene cluster, partial sequence
          Length = 75920

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 123   cgccgacgacgccatggcc 141
             |||||||||||||||||||
Sbjct: 49865 cgccgacgacgccatggcc 49883
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>gb|AC099934.14| Mus musculus chromosome 12, clone RP23-17K9, complete sequence
          Length = 234795

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 130    gacgccatggccatggcag 148
              |||||||||||||||||||
Sbjct: 194048 gacgccatggccatggcag 194030
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                       
Query: 72       gatcgtcgccagcgaggtcgaga 94
                ||||||||||||||||| |||||
Sbjct: 32718435 gatcgtcgccagcgagggcgaga 32718457
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>gb|AC132290.3| Mus musculus BAC clone RP24-318H2 from chromosome 10, complete sequence
          Length = 152306

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 144    ggcagggaggcccacggag 162
              |||||||||||||||||||
Sbjct: 120815 ggcagggaggcccacggag 120833
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>gb|AY098743.2| Oryza sativa (japonica cultivar-group) globulin-like protein mRNA,
            complete cds
          Length = 1779

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 72   gatcgtcgccagcgaggtcgaga 94
            ||||||||||||||||| |||||
Sbjct: 1176 gatcgtcgccagcgagggcgaga 1198
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>emb|AL939120.1|SCO939120 Streptomyces coelicolor A3(2) complete genome; segment 17/29
          Length = 248550

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 12    cgcggcggcggtcgggctc 30
             |||||||||||||||||||
Sbjct: 59770 cgcggcggcggtcgggctc 59788
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>gb|AC161426.5| Mus musculus BAC clone RP23-69L13 from chromosome 10, complete sequence
          Length = 255667

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 144   ggcagggaggcccacggag 162
             |||||||||||||||||||
Sbjct: 91475 ggcagggaggcccacggag 91493
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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 125     ccgacgacgccatggccat 143
               |||||||||||||||||||
Sbjct: 2890891 ccgacgacgccatggccat 2890873
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>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome
          Length = 3561584

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                      
Query: 4       ctgcttttcgcggcggcggtcgg 26
               ||||||| |||||||||||||||
Sbjct: 3001392 ctgctttgcgcggcggcggtcgg 3001370
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 11      tcgcggcggcggtcgggct 29
               |||||||||||||||||||
Sbjct: 1528738 tcgcggcggcggtcgggct 1528756
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>gb|DQ346667.1| Rhodococcus sp. DK17 vanillate monooxygenase oxygenase subunit
           (vanA) and vanillate monooxygenase reductase subunit
           (vanB) genes, complete cds
          Length = 2290

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 155 ccacggagatcgacgagga 173
           |||||||||||||||||||
Sbjct: 561 ccacggagatcgacgagga 579
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 13       gcggcggcggtcgggctca 31
                |||||||||||||||||||
Sbjct: 14683261 gcggcggcggtcgggctca 14683279
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                       
Query: 72       gatcgtcgccagcgaggtcgaga 94
                ||||||||||||||||| |||||
Sbjct: 32808945 gatcgtcgccagcgagggcgaga 32808967
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>gb|AC073618.48| Homo sapiens 12 BAC RP11-313E9 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 92909

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 81    cagcgaggtcgagaaccag 99
             |||||||||||||||||||
Sbjct: 52154 cagcgaggtcgagaaccag 52172
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>gb|AY179507.1| Streptomyces hygroscopicus strain NRRL 3602 geldanamycin biosynthesis
             gene cluster, partial sequence
          Length = 69644

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 123   cgccgacgacgccatggcc 141
             |||||||||||||||||||
Sbjct: 42093 cgccgacgacgccatggcc 42111
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>ref|XM_576290.1| PREDICTED: Rattus norvegicus similar to FLJ43860 protein (LOC500889),
            mRNA
          Length = 2493

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                       
Query: 134  ccatggccatggcagggaggcccacgg 160
            |||||||| ||||| ||||||||||||
Sbjct: 1507 ccatggccctggcaaggaggcccacgg 1481
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>dbj|BA000002.2| Aeropyrum pernix K1 DNA, complete genome
          Length = 1669695

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                      
Query: 110     cccgccccgctgacgccgacgac 132
               |||||||||||| ||||||||||
Sbjct: 1443316 cccgccccgctggcgccgacgac 1443338
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 10     ttcgcggcggcggtcgggc 28
              |||||||||||||||||||
Sbjct: 635753 ttcgcggcggcggtcgggc 635771
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>gb|AC009145.4|AC009145 Homo sapiens chromosome 16 clone RP11-556H2, complete sequence
          Length = 182302

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 94    aaccagcagaagaaagccc 112
             |||||||||||||||||||
Sbjct: 92023 aaccagcagaagaaagccc 92005
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>dbj|AB116234.1| Streptomyces venezuelae papA, papC, papB, ORFIV genes for
            4-amino-4-deoxychorismate synthase,
            4-amino-4-deoxyprephenate dehydrogenase,
            4-amino-4-deoxychorismate mutase, hypothetical protein,
            complete cds
          Length = 5251

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 111  ccgccccgctgacgccgacgacg 133
            ||||||||||| |||||||||||
Sbjct: 2753 ccgccccgctgccgccgacgacg 2731
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>gb|AE005077.1| Halobacterium sp. NRC-1 section 108 of 170 of the complete genome
          Length = 14625

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 74   tcgtcgccagcgaggtcga 92
            |||||||||||||||||||
Sbjct: 9399 tcgtcgccagcgaggtcga 9417
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>dbj|AK121667.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033066K06, full
            insert sequence
          Length = 1702

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 72   gatcgtcgccagcgaggtcgaga 94
            ||||||||||||||||| |||||
Sbjct: 1211 gatcgtcgccagcgagggcgaga 1233
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>dbj|AK108955.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-153-C09, full
           insert sequence
          Length = 1001

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 7   cttttcgcggcggcggtcg 25
           |||||||||||||||||||
Sbjct: 405 cttttcgcggcggcggtcg 387
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>gb|U45321.1|OSU45321 Oryza sativa globulin-like protein mRNA, clone Ose709, partial cds
          Length = 559

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 72  gatcgtcgccagcgaggtcgaga 94
           ||||||||||||||||| |||||
Sbjct: 405 gatcgtcgccagcgagggcgaga 427
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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 93      gaaccagcagaagaaagcc 111
               |||||||||||||||||||
Sbjct: 1452735 gaaccagcagaagaaagcc 1452753
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                          
Query: 12      cgcggcggcggtcgggctcatcggcgg 38
               ||||| ||||||||||||| |||||||
Sbjct: 4303705 cgcggtggcggtcgggctcgtcggcgg 4303731
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>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence
          Length = 2648638

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 4       ctgcttttcgcggcggcgg 22
               |||||||||||||||||||
Sbjct: 2274695 ctgcttttcgcggcggcgg 2274677
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>dbj|AB070940.1| Streptomyces avermitilis oligomycin biosynthetic gene cluster
          Length = 104326

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 124   gccgacgacgccatggccatggc 146
             ||||| |||||||||||||||||
Sbjct: 10473 gccgaggacgccatggccatggc 10451


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,201,260
Number of Sequences: 3902068
Number of extensions: 1201260
Number of successful extensions: 98475
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 94728
Number of HSP's gapped (non-prelim): 3747
length of query: 173
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 151
effective length of database: 17,147,199,772
effective search space: 2589227165572
effective search space used: 2589227165572
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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