ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl18c01 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC104708.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1174_H11, complete sequence Length = 102567 Score = 117 bits (59), Expect = 3e-23 Identities = 86/95 (90%) Strand = Plus / Minus Query: 158 ggatcctggtggacacggacatcgacaccgacgacatcttcgccatcctctacctcctca 217 |||||||||||||||||||||| |||||||||||| ||||||| | ||||||||||||| Sbjct: 101280 ggatcctggtggacacggacatggacaccgacgacctcttcgcgctgctctacctcctca 101221 Query: 218 agcacgaccgcgccgagttcgacgtcaaggcaata 252 |||| ||||| |||||||||||||||||| |||| Sbjct: 101220 agcagaaccgctccgagttcgacgtcaaggtaata 101186
>gb|AC105319.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1657_H11, complete sequence Length = 98103 Score = 117 bits (59), Expect = 3e-23 Identities = 86/95 (90%) Strand = Plus / Minus Query: 158 ggatcctggtggacacggacatcgacaccgacgacatcttcgccatcctctacctcctca 217 |||||||||||||||||||||| |||||||||||| ||||||| | ||||||||||||| Sbjct: 6390 ggatcctggtggacacggacatggacaccgacgacctcttcgcgctgctctacctcctca 6331 Query: 218 agcacgaccgcgccgagttcgacgtcaaggcaata 252 |||| ||||| |||||||||||||||||| |||| Sbjct: 6330 agcagaaccgctccgagttcgacgtcaaggtaata 6296 Score = 91.7 bits (46), Expect = 1e-15 Identities = 73/82 (89%) Strand = Plus / Minus Query: 158 ggatcctggtggacacggacatcgacaccgacgacatcttcgccatcctctacctcctca 217 |||| ||||||||||||||||| |||||||||||| ||||||| | ||||||||||||| Sbjct: 26313 ggatactggtggacacggacatggacaccgacgacctcttcgcgctgctctacctcctca 26254 Query: 218 agcacgaccgcgccgagttcga 239 |||| ||||| |||||||||| Sbjct: 26253 agcagaaccgctccgagttcga 26232 Score = 60.0 bits (30), Expect = 5e-06 Identities = 54/62 (87%) Strand = Plus / Minus Query: 277 gatgctggtcatgcagtaaaccagctgtatgatctcctctacatgatgggccgtgatgac 336 |||||||||||||| || || || || |||||| | || ||||||||||||||||||||| Sbjct: 22135 gatgctggtcatgctgtgaatcatctctatgatatgctatacatgatgggccgtgatgac 22076 Query: 337 at 338 || Sbjct: 22075 at 22074
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 117 bits (59), Expect = 3e-23 Identities = 86/95 (90%) Strand = Plus / Minus Query: 158 ggatcctggtggacacggacatcgacaccgacgacatcttcgccatcctctacctcctca 217 |||||||||||||||||||||| |||||||||||| ||||||| | ||||||||||||| Sbjct: 19641381 ggatcctggtggacacggacatggacaccgacgacctcttcgcgctgctctacctcctca 19641322 Query: 218 agcacgaccgcgccgagttcgacgtcaaggcaata 252 |||| ||||| |||||||||||||||||| |||| Sbjct: 19641321 agcagaaccgctccgagttcgacgtcaaggtaata 19641287 Score = 91.7 bits (46), Expect = 1e-15 Identities = 73/82 (89%) Strand = Plus / Minus Query: 158 ggatcctggtggacacggacatcgacaccgacgacatcttcgccatcctctacctcctca 217 |||| ||||||||||||||||| |||||||||||| ||||||| | ||||||||||||| Sbjct: 19661304 ggatactggtggacacggacatggacaccgacgacctcttcgcgctgctctacctcctca 19661245 Query: 218 agcacgaccgcgccgagttcga 239 |||| ||||| |||||||||| Sbjct: 19661244 agcagaaccgctccgagttcga 19661223 Score = 60.0 bits (30), Expect = 5e-06 Identities = 54/62 (87%) Strand = Plus / Minus Query: 277 gatgctggtcatgcagtaaaccagctgtatgatctcctctacatgatgggccgtgatgac 336 |||||||||||||| || || || || |||||| | || ||||||||||||||||||||| Sbjct: 19657126 gatgctggtcatgctgtgaatcatctctatgatatgctatacatgatgggccgtgatgac 19657067 Query: 337 at 338 || Sbjct: 19657066 at 19657065
>gb|AY022832.1| Oryza sativa microsatellite MRG5157 containing (CGC)X10, genomic sequence Length = 230 Score = 115 bits (58), Expect = 1e-22 Identities = 82/90 (91%) Strand = Plus / Minus Query: 158 ggatcctggtggacacggacatcgacaccgacgacatcttcgccatcctctacctcctca 217 |||||||||||||||||||||| |||||||||||| ||||||| | ||||||||||||| Sbjct: 90 ggatcctggtggacacggacatggacaccgacgacctcttcgcgctgctctacctcctca 31 Query: 218 agcacgaccgcgccgagttcgacgtcaagg 247 |||| ||||| |||||||||||||||||| Sbjct: 30 agcagaaccgctccgagttcgacgtcaagg 1
>ref|XM_475209.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 198 Score = 91.7 bits (46), Expect = 1e-15 Identities = 73/82 (89%) Strand = Plus / Plus Query: 158 ggatcctggtggacacggacatcgacaccgacgacatcttcgccatcctctacctcctca 217 |||| ||||||||||||||||| |||||||||||| ||||||| | ||||||||||||| Sbjct: 89 ggatactggtggacacggacatggacaccgacgacctcttcgcgctgctctacctcctca 148 Query: 218 agcacgaccgcgccgagttcga 239 |||| ||||| |||||||||| Sbjct: 149 agcagaaccgctccgagttcga 170
>ref|XM_475208.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2730 Score = 60.0 bits (30), Expect = 5e-06 Identities = 54/62 (87%) Strand = Plus / Plus Query: 277 gatgctggtcatgcagtaaaccagctgtatgatctcctctacatgatgggccgtgatgac 336 |||||||||||||| || || || || |||||| | || ||||||||||||||||||||| Sbjct: 238 gatgctggtcatgctgtgaatcatctctatgatatgctatacatgatgggccgtgatgac 297 Query: 337 at 338 || Sbjct: 298 at 299
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 48.1 bits (24), Expect = 0.020 Identities = 27/28 (96%) Strand = Plus / Plus Query: 108 ggcggcgcggctcgccgcggcggcgggc 135 |||||||||| ||||||||||||||||| Sbjct: 2023968 ggcggcgcggttcgccgcggcggcgggc 2023995 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 107 cggcggcgcggctcgccgcgg 127 ||||||||||||||||||||| Sbjct: 2861624 cggcggcgcggctcgccgcgg 2861604
>gb|AY523976.1|AY523972S5 Azospirillum brasilense plasmid 90 MDa, partial sequence Length = 32896 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Plus Query: 110 cggcgcggctcgccgcggcggc 131 |||||||||||||||||||||| Sbjct: 13988 cggcgcggctcgccgcggcggc 14009
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Minus Query: 108 ggcggcgcggctcgccgcggcg 129 |||||||||||||||||||||| Sbjct: 12795355 ggcggcgcggctcgccgcggcg 12795334 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 107 cggcggcgcggctcgccgcggcggc 131 |||||||| |||||||||||||||| Sbjct: 29654618 cggcggcggggctcgccgcggcggc 29654642
>gb|AC148339.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone B1339A06, complete sequence Length = 132243 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Minus Query: 108 ggcggcgcggctcgccgcggcg 129 |||||||||||||||||||||| Sbjct: 33571 ggcggcgcggctcgccgcggcg 33550
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Minus Query: 108 ggcggcgcggctcgccgcggcg 129 |||||||||||||||||||||| Sbjct: 12792118 ggcggcgcggctcgccgcggcg 12792097 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 107 cggcggcgcggctcgccgcggcggc 131 |||||||| |||||||||||||||| Sbjct: 29746040 cggcggcggggctcgccgcggcggc 29746064
>gb|AC103550.13| Oryza sativa chromosome 3 BAC OSJNBa0079G12 genomic sequence, complete sequence Length = 163712 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 107 cggcggcgcggctcgccgcggcggc 131 |||||||| |||||||||||||||| Sbjct: 116759 cggcggcggggctcgccgcggcggc 116735
>gb|CP000358.1| Deinococcus geothermalis DSM 11300 plasmid 1, complete sequence Length = 574126 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 108 ggcggcgcggctcgccgcggcggcg 132 |||||||| |||||||||||||||| Sbjct: 65510 ggcggcgcagctcgccgcggcggcg 65534
>emb|BX640443.1| Bordetella bronchiseptica strain RB50, complete genome; segment 7/16 Length = 346274 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 126 ggcggcgggcaaccggccgcc 146 ||||||||||||||||||||| Sbjct: 65373 ggcggcgggcaaccggccgcc 65393
>emb|BX640430.1| Bordetella parapertussis strain 12822, complete genome; segment 8/14 Length = 348014 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 126 ggcggcgggcaaccggccgcc 146 ||||||||||||||||||||| Sbjct: 329266 ggcggcgggcaaccggccgcc 329286
>emb|BX640419.1| Bordetella pertussis strain Tohama I, complete genome; segment 9/12 Length = 349672 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 126 ggcggcgggcaaccggccgcc 146 ||||||||||||||||||||| Sbjct: 152897 ggcggcgggcaaccggccgcc 152877
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 109 gcggcgcggctcgccgcggcg 129 ||||||||||||||||||||| Sbjct: 2062323 gcggcgcggctcgccgcggcg 2062303
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 115 cggctcgccgcggcggcgggc 135 ||||||||||||||||||||| Sbjct: 5168185 cggctcgccgcggcggcgggc 5168205 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 115 cggctcgccgcggcggcgggc 135 ||||||||||||||||||||| Sbjct: 3650573 cggctcgccgcggcggcgggc 3650593 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 218 agcacgaccgcgccgagttcg 238 ||||||||||||||||||||| Sbjct: 3464871 agcacgaccgcgccgagttcg 3464851
>gb|AE005028.1| Halobacterium sp. NRC-1 section 59 of 170 of the complete genome Length = 13408 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 171 cacggacatcgacaccgacga 191 ||||||||||||||||||||| Sbjct: 5453 cacggacatcgacaccgacga 5473
>ref|XM_466571.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1619 Score = 40.1 bits (20), Expect = 4.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 171 cacggacatcgacaccgacgacatcttc 198 |||||||||||||||||| ||| ||||| Sbjct: 601 cacggacatcgacaccgaggacgtcttc 628
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 109 gcggcgcggctcgccgcggcggcg 132 ||||||||||||| |||||||||| Sbjct: 2302575 gcggcgcggctcgtcgcggcggcg 2302598
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 107 cggcggcgcggctcgccgcggcgg 130 ||||||||||||||| |||||||| Sbjct: 561414 cggcggcgcggctcgacgcggcgg 561437
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 109 gcggcgcggctcgccgcggcggcg 132 ||||||||||||| |||||||||| Sbjct: 1374993 gcggcgcggctcgtcgcggcggcg 1375016
>gb|AF540910.1| Foot-and-mouth disease virus SAT 2 clone ZIM/7/83, complete genome Length = 8173 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 188 acgacatcttcgccatcctc 207 |||||||||||||||||||| Sbjct: 4410 acgacatcttcgccatcctc 4429
>emb|BX572593.1| Rhodopseudomonas palustris CGA009 complete genome; segment 1/16 Length = 349315 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 109 gcggcgcggctcgccgcggcggcg 132 ||||||||||||||||| |||||| Sbjct: 162405 gcggcgcggctcgccgctgcggcg 162428
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 109 gcggcgcggctcgccgcggcggcg 132 ||||||||||||| |||||||||| Sbjct: 1246909 gcggcgcggctcgtcgcggcggcg 1246932
>emb|AL939108.1|SCO939108 Streptomyces coelicolor A3(2) complete genome; segment 5/29 Length = 339650 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 110 cggcgcggctcgccgcggcggcgg 133 ||||||||||| |||||||||||| Sbjct: 297598 cggcgcggctctccgcggcggcgg 297621
>emb|AL939111.1|SCO939111 Streptomyces coelicolor A3(2) complete genome; segment 8/29 Length = 321250 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 126 ggcggcgggcaaccggccgccgtc 149 ||||||||||| |||||||||||| Sbjct: 306233 ggcggcgggcacccggccgccgtc 306256
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 182 acaccgacgacatcttcgcc 201 |||||||||||||||||||| Sbjct: 3500994 acaccgacgacatcttcgcc 3501013
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 4.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 171 cacggacatcgacaccgacgacatcttc 198 |||||||||||||||||| ||| ||||| Sbjct: 23423093 cacggacatcgacaccgaggacgtcttc 23423120
>gb|AY593846.1| Foot-and-mouth disease virus SAT 1 isolate sat1rhod iso33, complete genome Length = 8133 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 188 acgacatcttcgccatcctc 207 |||||||||||||||||||| Sbjct: 4372 acgacatcttcgccatcctc 4391
>gb|AY593845.1| Foot-and-mouth disease virus SAT 1 isolate sat1bot iso47, complete genome Length = 8175 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 188 acgacatcttcgccatcctc 207 |||||||||||||||||||| Sbjct: 4411 acgacatcttcgccatcctc 4430
>gb|AY593843.1| Foot-and-mouth disease virus SAT 1 isolate sat1-6swa iso16, complete genome Length = 8180 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 188 acgacatcttcgccatcctc 207 |||||||||||||||||||| Sbjct: 4416 acgacatcttcgccatcctc 4435
>gb|AY593842.1| Foot-and-mouth disease virus SAT 1 isolate sat1-5sa iso13, complete genome Length = 8176 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 188 acgacatcttcgccatcctc 207 |||||||||||||||||||| Sbjct: 4414 acgacatcttcgccatcctc 4433
>gb|AY593840.1| Foot-and-mouth disease virus SAT 1 isolate sat1-3swa iso14, complete genome Length = 8179 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 188 acgacatcttcgccatcctc 207 |||||||||||||||||||| Sbjct: 4415 acgacatcttcgccatcctc 4434
>gb|AY593839.1| Foot-and-mouth disease virus SAT 1 isolate sat1-20 iso11, complete genome Length = 8141 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 188 acgacatcttcgccatcctc 207 |||||||||||||||||||| Sbjct: 4372 acgacatcttcgccatcctc 4391
>gb|AY593838.1| Foot-and-mouth disease virus SAT 1 isolate sat1-1bech iso30, complete genome Length = 8173 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 188 acgacatcttcgccatcctc 207 |||||||||||||||||||| Sbjct: 4413 acgacatcttcgccatcctc 4432
>gb|AY593755.1| Foot-and-mouth disease virus A isolate a15thailand iso43, complete genome Length = 8192 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 188 acgacatcttcgccatcctc 207 |||||||||||||||||||| Sbjct: 4432 acgacatcttcgccatcctc 4451
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 109 gcggcgcggctcgccgcggcggcg 132 ||||||| |||||||||||||||| Sbjct: 3236004 gcggcgccgctcgccgcggcggcg 3236027 Score = 40.1 bits (20), Expect = 4.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 106 ccggcggcgcggctcgccgcggcggcgg 133 ||||||||||||| |||||||| ||||| Sbjct: 1325677 ccggcggcgcggcgcgccgcggaggcgg 1325650
>gb|AF210249.1|AF210249 Streptomyces verticillus bleomycin biosynthetic gene cluster, complete cds Length = 77457 Score = 40.1 bits (20), Expect = 4.8 Identities = 29/32 (90%) Strand = Plus / Minus Query: 105 tccggcggcgcggctcgccgcggcggcgggca 136 ||||||||||||| || ||||||| ||||||| Sbjct: 47450 tccggcggcgcggttcaccgcggccgcgggca 47419
>dbj|AP006457.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0038P01 Length = 148506 Score = 40.1 bits (20), Expect = 4.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 171 cacggacatcgacaccgacgacatcttc 198 |||||||||||||||||| ||| ||||| Sbjct: 136168 cacggacatcgacaccgaggacgtcttc 136195
>dbj|AP005293.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1653_F07, complete sequence Length = 110109 Score = 40.1 bits (20), Expect = 4.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 171 cacggacatcgacaccgacgacatcttc 198 |||||||||||||||||| ||| ||||| Sbjct: 41768 cacggacatcgacaccgaggacgtcttc 41795
>emb|AJ294477.1|MSM294477 Mycobacterium smegmatis ppm2 gene and ppm1 gene for putative polyprenol phosphate mannosyl transferase 2 and 1 Length = 2592 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 220 cacgaccgcgccgagttcga 239 |||||||||||||||||||| Sbjct: 486 cacgaccgcgccgagttcga 467
>emb|Y17736.2|SCY17736 Streptomyces coelicolor partial nadE, glnE genes and orfu2E and orfu1E Length = 5190 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 126 ggcggcgggcaaccggccgccgtc 149 ||||||||||| |||||||||||| Sbjct: 377 ggcggcgggcacccggccgccgtc 354
>dbj|AK119725.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-157-H04, full insert sequence Length = 1000 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 182 acaccgacgacatcttcgcc 201 |||||||||||||||||||| Sbjct: 212 acaccgacgacatcttcgcc 193
>dbj|AK119492.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-134-D06, full insert sequence Length = 1617 Score = 40.1 bits (20), Expect = 4.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 171 cacggacatcgacaccgacgacatcttc 198 |||||||||||||||||| ||| ||||| Sbjct: 599 cacggacatcgacaccgaggacgtcttc 626
>dbj|AK104011.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-007-B07, full insert sequence Length = 1039 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 182 acaccgacgacatcttcgcc 201 |||||||||||||||||||| Sbjct: 255 acaccgacgacatcttcgcc 236
>dbj|AK071641.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023106A11, full insert sequence Length = 1081 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 182 acaccgacgacatcttcgcc 201 |||||||||||||||||||| Sbjct: 292 acaccgacgacatcttcgcc 273
>gb|U31284.1|MCU31284 Mesotaenium caldariorum clone mesphy1b phytochrome gene, complete cds Length = 10878 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 17 gagcgagagcgtggtgggcg 36 |||||||||||||||||||| Sbjct: 7714 gagcgagagcgtggtgggcg 7733
>gb|U31283.1|MCU31283 Mesotaenium caldariorum clone mesphy1a phytochrome gene, partial cds, exons 4 through 10 Length = 4727 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 17 gagcgagagcgtggtgggcg 36 |||||||||||||||||||| Sbjct: 2994 gagcgagagcgtggtgggcg 3013
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 182 acaccgacgacatcttcgcc 201 |||||||||||||||||||| Sbjct: 3500939 acaccgacgacatcttcgcc 3500958
>emb|AL954825.3|CNS08CD1 Oryza sativa chromosome 12, . BAC OJ2007_H06 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 103647 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 182 acaccgacgacatcttcgcc 201 |||||||||||||||||||| Sbjct: 15922 acaccgacgacatcttcgcc 15941
>emb|AL713902.2|CNS07YQ2 Oryza sativa chromosome 12, . BAC OJ1494_F10 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 116371 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 182 acaccgacgacatcttcgcc 201 |||||||||||||||||||| Sbjct: 30920 acaccgacgacatcttcgcc 30901 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,397,102 Number of Sequences: 3902068 Number of extensions: 2397102 Number of successful extensions: 61324 Number of sequences better than 10.0: 53 Number of HSP's better than 10.0 without gapping: 56 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 58418 Number of HSP's gapped (non-prelim): 2906 length of query: 358 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 336 effective length of database: 17,147,199,772 effective search space: 5761459123392 effective search space used: 5761459123392 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
