>gb|L37359.1|BLYLOXB Hordeum vulgare lipoxygenase (LoxB) mRNA, complete cds
          Length = 3003

 Score =  163 bits (82), Expect = 4e-37
 Identities = 97/102 (95%)
 Strand = Plus / Plus

                                                                       
Query: 174 ccctaccaccaccactgccctccttgtgccaagtgcatcagcaaggggacaggcacccac 233
           ||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||
Sbjct: 5   ccctaccaccaccactgccctccttgtgccaagtgaataagctaggggacaggcacccac 64

                                                     
Query: 234 cggttgtgctcctcgtgctctgctctgccctgccttcgctgc 275
           |||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 65  cggttgtgttcctcgtgctctgctctgccctgcctccgctgc 106

>gb|AC148679.1| Macaca mulatta Major Histocompatibility Complex BAC MMU125K24, complete
              sequence
          Length = 181659

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 65     tctctctccatctctgacatc 85
              |||||||||||||||||||||
Sbjct: 141861 tctctctccatctctgacatc 141841

>dbj|AB128049.1| Macaca mulatta genes, MHC class I region, partial and complete cds
          Length = 3284914

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 65     tctctctccatctctgacatc 85
              |||||||||||||||||||||
Sbjct: 102336 tctctctccatctctgacatc 102356

>gb|AC046158.6| Homo sapiens chromosome 16 clone RP11-264L1, complete sequence
          Length = 150361

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 250   gctctgctctgccctgccttc 270
             |||||||||||||||||||||
Sbjct: 31213 gctctgctctgccctgccttc 31233

>ref|NM_032242.2| Homo sapiens plexin A1 (PLXNA1), mRNA
          Length = 9040

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 248  gtgctctgctctgccctgcc 267
            ||||||||||||||||||||
Sbjct: 7903 gtgctctgctctgccctgcc 7922

>gb|AC092187.2| Drosophila melanogaster clone BACR23N06, complete sequence
          Length = 164920

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 249    tgctctgctctgccctgcct 268
              ||||||||||||||||||||
Sbjct: 144131 tgctctgctctgccctgcct 144150

>gb|AF538844.1| Homo sapiens matrix metalloproteinase 9 (gelatinase B, 92kD
            gelatinase, 92kD type IV collagenase) (MMP9) gene,
            complete cds
          Length = 11224

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 169  ggccaccctaccaccaccactgcc 192
            |||||||| |||||||||||||||
Sbjct: 5458 ggccaccccaccaccaccactgcc 5435

>ref|XM_422445.1| PREDICTED: Gallus gallus similar to chromosome 9 open reading frame
            150; similar to DNA segment, Chr 4, Brigham & Womens
            Genetics 0951 expressed (LOC424608), mRNA
          Length = 2528

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 245  ctcgtgctctgctctgccct 264
            ||||||||||||||||||||
Sbjct: 1221 ctcgtgctctgctctgccct 1202

>gb|BC032432.1| Homo sapiens plexin A1, mRNA (cDNA clone IMAGE:4517879), complete
           cds
          Length = 1383

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 248 gtgctctgctctgccctgcc 267
           ||||||||||||||||||||
Sbjct: 154 gtgctctgctctgccctgcc 173

>gb|BC042904.1| Homo sapiens plexin A1, mRNA (cDNA clone IMAGE:5258253), partial cds
          Length = 2497

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 248  gtgctctgctctgccctgcc 267
            ||||||||||||||||||||
Sbjct: 1360 gtgctctgctctgccctgcc 1379

>gb|AC134560.5| Mus musculus BAC clone RP24-100B13 from chromosome 16, complete
             sequence
          Length = 175179

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 175   cctaccaccaccactgccct 194
             ||||||||||||||||||||
Sbjct: 57953 cctaccaccaccactgccct 57972

>gb|DQ194553.1| Homo sapiens matrix metallopeptidase 9 (gelatinase B, 92kDa
            gelatinase, 92kDa type IV collagenase) (MMP9) gene,
            complete cds
          Length = 11651

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 169  ggccaccctaccaccaccactgcc 192
            |||||||| |||||||||||||||
Sbjct: 5467 ggccaccccaccaccaccactgcc 5444

>emb|AL136663.1|HSM800089 Homo sapiens mRNA; cDNA DKFZp564A176 (from clone DKFZp564A176)
          Length = 1424

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 248 gtgctctgctctgccctgcc 267
           ||||||||||||||||||||
Sbjct: 314 gtgctctgctctgccctgcc 333

>dbj|AK128612.1| Homo sapiens cDNA FLJ46771 fis, clone TRACH3025828, highly  similar
            to Mus musculus plexin A1 (Plxna1)
          Length = 4196

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 248  gtgctctgctctgccctgcc 267
            ||||||||||||||||||||
Sbjct: 3105 gtgctctgctctgccctgcc 3124

>dbj|AK127254.1| Homo sapiens cDNA FLJ45321 fis, clone BRHIP3006279
          Length = 4231

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 248  gtgctctgctctgccctgcc 267
            ||||||||||||||||||||
Sbjct: 3140 gtgctctgctctgccctgcc 3159

>dbj|AK054675.1| Homo sapiens cDNA FLJ30113 fis, clone BNGH42000474
          Length = 2187

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 248  gtgctctgctctgccctgcc 267
            ||||||||||||||||||||
Sbjct: 1096 gtgctctgctctgccctgcc 1115

>dbj|AB191331.1| Porphyra yezoensis DNA, microsatellite Pye43
          Length = 240

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 171 ccaccctaccaccaccactg 190
           ||||||||||||||||||||
Sbjct: 151 ccaccctaccaccaccactg 170

>gb|AC011199.22| Homo sapiens chromosome 3 clone RP11-61K12, complete sequence
          Length = 152135

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 248   gtgctctgctctgccctgcc 267
             ||||||||||||||||||||
Sbjct: 22923 gtgctctgctctgccctgcc 22904

>gb|AC130566.7| Homo sapiens 3 BAC RP11-61K12 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 91240

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 248   gtgctctgctctgccctgcc 267
             ||||||||||||||||||||
Sbjct: 67978 gtgctctgctctgccctgcc 67997

>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 70     ctccatctctgacatcgctg 89
              ||||||||||||||||||||
Sbjct: 895288 ctccatctctgacatcgctg 895269

>gb|AC007765.1|AC007765 Drosophila melanogaster, chromosome 2L, region 23C1-23C5, P1 clones
              DS02190 and DS00906, complete sequence
          Length = 163403

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 249    tgctctgctctgccctgcct 268
              ||||||||||||||||||||
Sbjct: 122314 tgctctgctctgccctgcct 122333

>gb|AE003581.4| Drosophila melanogaster chromosome 2L, section 10 of 83 of the complete
             sequence
          Length = 314957

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 249   tgctctgctctgccctgcct 268
             ||||||||||||||||||||
Sbjct: 78385 tgctctgctctgccctgcct 78366

>emb|AL162458.10| Human DNA sequence from clone RP11-465L10 on chromosome 20, complete
             sequence
          Length = 150791

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 169   ggccaccctaccaccaccactgcc 192
             |||||||| |||||||||||||||
Sbjct: 98790 ggccaccccaccaccaccactgcc 98767

>emb|AL805919.10| Mouse DNA sequence from clone RP23-395M3 on chromosome 4, complete
              sequence
          Length = 199130

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 171    ccaccctaccaccaccactg 190
              ||||||||||||||||||||
Sbjct: 198676 ccaccctaccaccaccactg 198657

>emb|AL772137.8| Mouse DNA sequence from clone RP23-229A22 on chromosome 4, complete
            sequence
          Length = 165975

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 171  ccaccctaccaccaccactg 190
            ||||||||||||||||||||
Sbjct: 1546 ccaccctaccaccaccactg 1527

>emb|AL844169.6| Mouse DNA sequence from clone RP23-322K15 on chromosome 4, complete
             sequence
          Length = 123433

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 249   tgctctgctctgccctgcct 268
             ||||||||||||||||||||
Sbjct: 32677 tgctctgctctgccctgcct 32696


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,314,674
Number of Sequences: 3902068
Number of extensions: 2314674
Number of successful extensions: 63378
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 63308
Number of HSP's gapped (non-prelim): 70
length of query: 275
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 253
effective length of database: 17,147,199,772
effective search space: 4338241542316
effective search space used: 4338241542316
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)