ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl18b09 |
|---|---|
| Clone Library Name | barley_pub |
>LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 187 bits (476), Expect = 4e-48 Identities = 95/97 (97%), Positives = 95/97 (97%) Frame = +2 Query: 107 MLLGGLIDTLTGANKSARLKGTVVLMRKNVLDLNDFGATIIDGIGEFLGKGVTCQLISST 286 MLLGGLIDTLTGANKSARLKGTVVLMRKNVLDLNDFGATIIDGIGEFLGKGVTCQLISST Sbjct: 1 MLLGGLIDTLTGANKSARLKGTVVLMRKNVLDLNDFGATIIDGIGEFLGKGVTCQLISST 60 Query: 287 AVDQDNGGRGKVGAEAELEQWVTGLPSLTTXESKFGL 397 AVDQDNGGRGKVGAEAELEQWVT LPSLTT ESKFGL Sbjct: 61 AVDQDNGGRGKVGAEAELEQWVTSLPSLTTGESKFGL 97
>LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12)| Length = 866 Score = 160 bits (404), Expect = 9e-40 Identities = 78/97 (80%), Positives = 90/97 (92%), Gaps = 1/97 (1%) Frame = +2 Query: 110 LLGGLIDTLTGANKSARLKGTVVLMRKNVLDLNDFGATIIDGIGEFLGKGVTCQLISSTA 289 +LGG+IDT+TG++K +RLKGTVVLMRKNVLDLNDFGAT+IDG+GEFLGKGVTCQLISSTA Sbjct: 1 MLGGIIDTITGSSKQSRLKGTVVLMRKNVLDLNDFGATVIDGLGEFLGKGVTCQLISSTA 60 Query: 290 VDQDNGGRGKVGAEAELEQWVT-GLPSLTTXESKFGL 397 VD +NG RGKVGAEA LEQW+T LPSLTT ES+FG+ Sbjct: 61 VDPNNGNRGKVGAEASLEQWLTSSLPSLTTGESRFGV 97
>LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase L-2)| Length = 870 Score = 145 bits (366), Expect = 2e-35 Identities = 70/96 (72%), Positives = 84/96 (87%) Frame = +2 Query: 110 LLGGLIDTLTGANKSARLKGTVVLMRKNVLDLNDFGATIIDGIGEFLGKGVTCQLISSTA 289 +LGG+I LTG NK+ARLKG++VLMRKN LD+NDFGAT+IDGI EFLG+GVTCQL+SS+ Sbjct: 1 MLGGIIGGLTG-NKNARLKGSLVLMRKNALDINDFGATVIDGISEFLGRGVTCQLVSSSL 59 Query: 290 VDQDNGGRGKVGAEAELEQWVTGLPSLTTXESKFGL 397 VD +NG RG+VG EA LEQW+T LPSLTT ESKFG+ Sbjct: 60 VDPNNGNRGRVGTEASLEQWLTSLPSLTTGESKFGV 95
>LOX1_ARATH (Q06327) Lipoxygenase 1 (EC 1.13.11.12)| Length = 859 Score = 97.4 bits (241), Expect = 7e-21 Identities = 48/97 (49%), Positives = 63/97 (64%), Gaps = 3/97 (3%) Frame = +2 Query: 110 LLGGLIDTLTGANKSA---RLKGTVVLMRKNVLDLNDFGATIIDGIGEFLGKGVTCQLIS 280 + G L D LTG ++KGTVVLM+KNVLD NDF A+ +D + EFLG +T +L+S Sbjct: 1 MFGELRDLLTGGGNETTTKKVKGTVVLMKKNVLDFNDFNASFLDRLHEFLGNKITLRLVS 60 Query: 281 STAVDQDNGGRGKVGAEAELEQWVTGLPSLTTXESKF 391 S D +NG +GK+G A LE W+T + SLT ES F Sbjct: 61 SDVTDSENGSKGKLGKAAHLEDWITTITSLTAGESAF 97
>LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygenase) (r9-LOX1)| Length = 863 Score = 96.3 bits (238), Expect = 2e-20 Identities = 48/93 (51%), Positives = 66/93 (70%) Frame = +2 Query: 110 LLGGLIDTLTGANKSARLKGTVVLMRKNVLDLNDFGATIIDGIGEFLGKGVTCQLISSTA 289 +LGGL D LTG N + ++KG VLM + +LD DF A+++D + E G +TCQL+S+T Sbjct: 1 MLGGLKDKLTGKNGN-KIKGLAVLMSRKLLDPRDFTASLLDNVHEVFGNSITCQLVSATV 59 Query: 290 VDQDNGGRGKVGAEAELEQWVTGLPSLTTXESK 388 DQ+N GRG VG+EA LEQ +T LPS++ ESK Sbjct: 60 ADQNNEGRGIVGSEANLEQGLTDLPSVSQGESK 92
>LOX4_ORYSA (Q53RB0) Probable lipoxygenase 4 (EC 1.13.11.12)| Length = 877 Score = 84.3 bits (207), Expect = 6e-17 Identities = 47/101 (46%), Positives = 64/101 (63%), Gaps = 6/101 (5%) Frame = +2 Query: 107 MLLGGLIDTLTGANKSA----RLKGTVVLMRKNVLDLNDFGATIIDGIGEFLG--KGVTC 268 M + G D LTG NK A R++GT VL++K+VL L DF A+++DG+ LG +GV Sbjct: 1 MQVQGFFDRLTGRNKEAWKEGRIRGTAVLVKKDVLGLGDFHASLLDGVHNILGHKEGVAF 60 Query: 269 QLISSTAVDQDNGGRGKVGAEAELEQWVTGLPSLTTXESKF 391 +L+S+TA D NGGRGK+G A LE+ V + S ES F Sbjct: 61 RLVSATARDPSNGGRGKLGKPAHLEELVVTMKSTAAGESVF 101
>LOXB_LYCES (P38416) Lipoxygenase B (EC 1.13.11.12)| Length = 859 Score = 81.3 bits (199), Expect = 5e-16 Identities = 42/97 (43%), Positives = 64/97 (65%) Frame = +2 Query: 107 MLLGGLIDTLTGANKSARLKGTVVLMRKNVLDLNDFGATIIDGIGEFLGKGVTCQLISST 286 M LGG++D + G + ++KG V+LM+KNVLD + GA+++DGI + LG+ V+ QLIS Sbjct: 1 MSLGGIVDAILGKDDRPKVKGRVILMKKNVLDFINIGASVVDGISDLLGQKVSIQLISG- 59 Query: 287 AVDQDNGGRGKVGAEAELEQWVTGLPSLTTXESKFGL 397 +V+ D G GK+ A LE W+T + +T ES F + Sbjct: 60 SVNYD-GLEGKLSNPAYLESWLTDITPITAGESTFSV 95
>LOXA_LYCES (P38415) Lipoxygenase A (EC 1.13.11.12)| Length = 860 Score = 70.1 bits (170), Expect = 1e-12 Identities = 42/96 (43%), Positives = 57/96 (59%) Frame = +2 Query: 110 LLGGLIDTLTGANKSARLKGTVVLMRKNVLDLNDFGATIIDGIGEFLGKGVTCQLISSTA 289 L+GGLI G + S ++KGTVV+M+KN LD D ++ D I E LG+ V+ QLISS Sbjct: 5 LVGGLIG---GHHDSKKVKGTVVMMKKNALDFTDLAGSLTDKIFEALGQKVSFQLISSVQ 61 Query: 290 VDQDNGGRGKVGAEAELEQWVTGLPSLTTXESKFGL 397 D NG +GK A LE ++ L L E+ FG+ Sbjct: 62 SDPANGLQGKHSNPAYLENFLLTLTPLAAGETAFGV 97
>LOX2_PEA (P14856) Seed lipoxygenase-2 (EC 1.13.11.12)| Length = 864 Score = 67.4 bits (163), Expect = 8e-12 Identities = 44/102 (43%), Positives = 56/102 (54%), Gaps = 18/102 (17%) Frame = +2 Query: 146 NKSARLKGTVVLMRKNVLDLN--------------DFGATII----DGIGEFLGKGVTCQ 271 NK +++GTVVLMRKNVLD N D G II DG+ FLG+ V+ Q Sbjct: 10 NKGHKIRGTVVLMRKNVLDFNTIVSIGGGNVHGVIDSGINIIGSTLDGLTAFLGRSVSLQ 69 Query: 272 LISSTAVDQDNGGRGKVGAEAELEQWVTGLPSLTTXESKFGL 397 LIS+T D G+GKVG + LE + LP+L ES F + Sbjct: 70 LISAT--KSDANGKGKVGKDTFLEGVLASLPTLGAGESAFNI 109
>LOX1_SOYBN (P08170) Seed lipoxygenase-1 (EC 1.13.11.12) (L-1)| Length = 839 Score = 64.3 bits (155), Expect = 7e-11 Identities = 37/80 (46%), Positives = 51/80 (63%) Frame = +2 Query: 158 RLKGTVVLMRKNVLDLNDFGATIIDGIGEFLGKGVTCQLISSTAVDQDNGGRGKVGAEAE 337 ++KGTVVLM KN L++N G+ + D + FLG+ V+ QLIS+T D G+GKVG + Sbjct: 7 KIKGTVVLMPKNELEVNPDGSAV-DNLNAFLGRSVSLQLISATKADAH--GKGKVGKDTF 63 Query: 338 LEQWVTGLPSLTTXESKFGL 397 LE T LP+L ES F + Sbjct: 64 LEGINTSLPTLGAGESAFNI 83
>LOX3_PEA (P09918) Seed lipoxygenase-3 (EC 1.13.11.12)| Length = 861 Score = 63.5 bits (153), Expect = 1e-10 Identities = 38/95 (40%), Positives = 54/95 (56%), Gaps = 13/95 (13%) Frame = +2 Query: 146 NKSARLKGTVVLMRKNVLDLN-------------DFGATIIDGIGEFLGKGVTCQLISST 286 N+ ++KGTVVLMRKNVLD+N D + +D + FLG+ V+ QLIS+T Sbjct: 10 NRGHKIKGTVVLMRKNVLDINSLTTVGGVIGQGFDILGSTVDNLTAFLGRSVSLQLISAT 69 Query: 287 AVDQDNGGRGKVGAEAELEQWVTGLPSLTTXESKF 391 D G+GK+G LE ++ LP+L +S F Sbjct: 70 KPDAT--GKGKLGKATFLEGIISSLPTLGAGQSAF 102
>LOX3_SOYBN (P09186) Seed lipoxygenase-3 (EC 1.13.11.12) (L-3)| Length = 857 Score = 62.8 bits (151), Expect = 2e-10 Identities = 41/107 (38%), Positives = 60/107 (56%), Gaps = 13/107 (12%) Frame = +2 Query: 110 LLGGLIDTLTGANKSARLKGTVVLMRKNVLDLN-------------DFGATIIDGIGEFL 250 +LGGL+ ++ ++KGTVVLMRKNVL +N D + +D + FL Sbjct: 1 MLGGLL------HRGHKIKGTVVLMRKNVLHVNSVTSVGGIIGQGLDLVGSTLDTLTAFL 54 Query: 251 GKGVTCQLISSTAVDQDNGGRGKVGAEAELEQWVTGLPSLTTXESKF 391 G+ V+ QLIS+T D + G+GK+G LE +T LP+L +S F Sbjct: 55 GRPVSLQLISATKADAN--GKGKLGKATFLEGIITSLPTLGAGQSAF 99
>LOX1_LENCU (P38414) Lipoxygenase (EC 1.13.11.12)| Length = 866 Score = 59.7 bits (143), Expect = 2e-09 Identities = 38/103 (36%), Positives = 53/103 (51%), Gaps = 20/103 (19%) Frame = +2 Query: 149 KSARLKGTVVLMRKNVLDLN--------------------DFGATIIDGIGEFLGKGVTC 268 + +LKGTV+LM+KNVLD+N +IID FLG+ V Sbjct: 8 RGQKLKGTVILMQKNVLDINALTAAQSPSGIIGGAFGVVGSIAGSIIDTATAFLGRSVRL 67 Query: 269 QLISSTAVDQDNGGRGKVGAEAELEQWVTGLPSLTTXESKFGL 397 +LIS+T D G+GKV EA LE +T +P+L +S F + Sbjct: 68 RLISATVADA--SGKGKVSKEAFLEGLLTSIPTLGDKQSAFSV 108
>LOX1_SOLTU (P37831) Lipoxygenase 1 (EC 1.13.11.12)| Length = 861 Score = 59.3 bits (142), Expect = 2e-09 Identities = 37/87 (42%), Positives = 50/87 (57%), Gaps = 1/87 (1%) Frame = +2 Query: 140 GANKSARLKGTVVLMRKNVLDLNDFGATIIDGIGEFLGKGVTCQLISSTAVDQDNGGRGK 319 G + S ++KGTVV+M KNVLD D ++ I + LG+ V+ QLISS D NG +GK Sbjct: 12 GHDDSKKVKGTVVMMNKNVLDFTDLAGSLTGKIFDVLGQKVSFQLISSVQGDPTNGLQGK 71 Query: 320 VGAEAELEQWVTGLPSLTT-XESKFGL 397 A LE + L LT E+ FG+ Sbjct: 72 HSNPAYLENSLFTLTPLTAGSETAFGV 98
>LOX2_SOYBN (P09439) Seed lipoxygenase-2 (EC 1.13.11.12) (L-2)| Length = 865 Score = 57.4 bits (137), Expect = 8e-09 Identities = 37/98 (37%), Positives = 50/98 (51%), Gaps = 18/98 (18%) Frame = +2 Query: 158 RLKGTVVLMRKNVLDLNDFG------------------ATIIDGIGEFLGKGVTCQLISS 283 ++KGTVVLMRKNVLD N + +D + FLG+ V QLIS+ Sbjct: 18 KIKGTVVLMRKNVLDFNSVADLTKGNVGGLIGTGLNVVGSTLDNLTAFLGRSVALQLISA 77 Query: 284 TAVDQDNGGRGKVGAEAELEQWVTGLPSLTTXESKFGL 397 T + G+GKVG + LE + LP+L ES F + Sbjct: 78 TKPLAN--GKGKVGKDTFLEGIIVSLPTLGAGESAFNI 113
>LOXX_SOYBN (P24095) Seed lipoxygenase (EC 1.13.11.12)| Length = 864 Score = 57.0 bits (136), Expect = 1e-08 Identities = 37/106 (34%), Positives = 53/106 (50%), Gaps = 22/106 (20%) Frame = +2 Query: 146 NKSARLKGTVVLMRKNVLDLNDF------------------GATIIDGI----GEFLGKG 259 +K ++KGTVVLM KNVLD N G +++ G+ FLG+ Sbjct: 6 DKGQKIKGTVVLMPKNVLDFNAITSIGKGGVIDTATGILGQGVSLVGGVIDTATSFLGRN 65 Query: 260 VTCQLISSTAVDQDNGGRGKVGAEAELEQWVTGLPSLTTXESKFGL 397 ++ QLIS+T D G GKVG E LE+ + LP+L + F + Sbjct: 66 ISMQLISAT--QTDGSGNGKVGKEVYLEKHLPTLPTLGARQDAFSI 109
>LOXA_PHAVU (P27480) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 54.7 bits (130), Expect = 5e-08 Identities = 35/106 (33%), Positives = 50/106 (47%), Gaps = 22/106 (20%) Frame = +2 Query: 146 NKSARLKGTVVLMRKNVLDLNDFGAT----------------------IIDGIGEFLGKG 259 N+ ++KGTVVLM KNV D N+F +T I+DG + Sbjct: 6 NRGHKIKGTVVLMTKNVFDFNEFVSTTRGGIVGAAGGLFGAATDIVGGIVDGATAIFSRN 65 Query: 260 VTCQLISSTAVDQDNGGRGKVGAEAELEQWVTGLPSLTTXESKFGL 397 + QLIS+T D G GKVG + LE+ + LP+L + F + Sbjct: 66 IAIQLISATKT--DGLGNGKVGKQTFLEKHLPSLPNLGDRQDAFNV 109
>LOX4_SOYBN (P38417) Lipoxygenase-4 (EC 1.13.11.12) (L-4) (VSP94)| Length = 853 Score = 51.2 bits (121), Expect = 6e-07 Identities = 35/94 (37%), Positives = 51/94 (54%), Gaps = 13/94 (13%) Frame = +2 Query: 149 KSARLKGTVVLMRKNVLDLNDF---GATIIDGIGEFLGKGV----------TCQLISSTA 289 K ++KGT+V+M+KNVLD+N G + G+G F+G V + QLIS+T Sbjct: 7 KGQKIKGTMVVMQKNVLDINSITSVGGIVDQGLG-FIGSAVDALTFAATKISIQLISATK 65 Query: 290 VDQDNGGRGKVGAEAELEQWVTGLPSLTTXESKF 391 D GG+GK+G L +T LP+L E + Sbjct: 66 AD---GGKGKIGKSTNLRGKIT-LPTLGAGEQAY 95
>SDK2_HUMAN (Q58EX2) Protein sidekick-2 precursor| Length = 2170 Score = 31.6 bits (70), Expect = 0.48 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 2/63 (3%) Frame = -2 Query: 396 RPNLDSXVVSDGRPVTHCSSSASAPTFPRPPLSWSTAVELISWQVTPLPRNSPMP--SMM 223 R LDS V+ V C +S + PRP ++W +++ LPR +P+ S++ Sbjct: 404 RGPLDSTVIDGMSVVLACETSGA----PRPAITWQKGERILASGSVQLPRFTPLESGSLL 459 Query: 222 VAP 214 ++P Sbjct: 460 ISP 462
>OAR_MYXXA (P38370) Protein oar precursor| Length = 1061 Score = 31.2 bits (69), Expect = 0.62 Identities = 14/32 (43%), Positives = 20/32 (62%) Frame = +2 Query: 131 TLTGANKSARLKGTVVLMRKNVLDLNDFGATI 226 TL G K R +GTV+ + + +L DFGAT+ Sbjct: 261 TLEGTRKQIREEGTVITGQNQLQNLGDFGATL 292
>WEB1_YEAST (P38968) Protein WEB1 (Protein transport protein SEC31)| Length = 1273 Score = 30.4 bits (67), Expect = 1.1 Identities = 21/61 (34%), Positives = 37/61 (60%), Gaps = 1/61 (1%) Frame = -2 Query: 375 VVSDGRPVTHCSSSASAPTFPRPPLSWS-TAVELISWQVTPLPRNSPMPSMMVAPKSLRS 199 ++S P+ ++A A T P PPLS + ++V ++S PL +NS +PS++ +S R+ Sbjct: 946 ILSTPTPLNGIPANA-ASTMPPPPLSRAPSSVSMVS--PPPLHKNSRVPSLVATSESPRA 1002 Query: 198 S 196 S Sbjct: 1003 S 1003
>LRP_CAEEL (Q04833) Low-density lipoprotein receptor-related protein precursor| (LRP) Length = 4753 Score = 29.3 bits (64), Expect = 2.4 Identities = 14/41 (34%), Positives = 22/41 (53%) Frame = -2 Query: 396 RPNLDSXVVSDGRPVTHCSSSASAPTFPRPPLSWSTAVELI 274 +P+ + +S RP T +SS PTF + + TA E+I Sbjct: 4674 QPSTSASAMSPNRPSTSAASSFVPPTFDQDEIELKTADEII 4714
>HEM6_SOYBN (P35055) Coproporphyrinogen III oxidase, chloroplast precursor (EC| 1.3.3.3) (Coproporphyrinogenase) (Coprogen oxidase) Length = 385 Score = 28.9 bits (63), Expect = 3.1 Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 11/66 (16%) Frame = -2 Query: 348 HCSSSASAPTFPRPPLSWS-----TAVELI--SWQVTPLPRNSPMPSMM----VAPKSLR 202 HC+S SAP++ P S S TA+ L SW+ P P+ + + P++ R Sbjct: 3 HCASIVSAPSYAFPFRSGSASTTPTAISLTKRSWKPPPSMAKGPVRATVSIEKETPEANR 62 Query: 201 SSTFLR 184 TFLR Sbjct: 63 PETFLR 68
>AGO2_DROME (Q9VUQ5) Argonaute 2 protein| Length = 1214 Score = 28.9 bits (63), Expect = 3.1 Identities = 14/42 (33%), Positives = 20/42 (47%) Frame = +1 Query: 70 GAVKARRGGQEQDAAGRADRHPHGGEQERPAQGHGGAHAQER 195 G + R GQ+Q + + GG Q+RP+ G H Q R Sbjct: 315 GGYQQRPSGQQQGGHQQGRQGQEGGYQQRPSGQQQGGHQQGR 356 Score = 28.9 bits (63), Expect = 3.1 Identities = 14/42 (33%), Positives = 20/42 (47%) Frame = +1 Query: 70 GAVKARRGGQEQDAAGRADRHPHGGEQERPAQGHGGAHAQER 195 G + R GQ+Q + + GG Q+RP+ G H Q R Sbjct: 292 GGYQQRPSGQQQGGHQQGRQGQEGGYQQRPSGQQQGGHQQGR 333 Score = 28.1 bits (61), Expect = 5.3 Identities = 14/42 (33%), Positives = 20/42 (47%) Frame = +1 Query: 70 GAVKARRGGQEQDAAGRADRHPHGGEQERPAQGHGGAHAQER 195 G + R GQ+Q + + GG Q+RP+ G H Q R Sbjct: 269 GGYQQRPPGQQQGGHEQGRQGQEGGYQQRPSGQQQGGHQQGR 310 Score = 28.1 bits (61), Expect = 5.3 Identities = 14/42 (33%), Positives = 19/42 (45%) Frame = +1 Query: 70 GAVKARRGGQEQDAAGRADRHPHGGEQERPAQGHGGAHAQER 195 G + R GQ+Q + + GG Q+RP G H Q R Sbjct: 223 GGYQQRPSGQQQGGHQQGRQGQEGGYQQRPPGQQQGGHQQGR 264 Score = 28.1 bits (61), Expect = 5.3 Identities = 14/42 (33%), Positives = 20/42 (47%) Frame = +1 Query: 70 GAVKARRGGQEQDAAGRADRHPHGGEQERPAQGHGGAHAQER 195 G + R GQ+Q + + GG Q+RP+ G H Q R Sbjct: 200 GGYQQRPPGQQQGGHQQGRQGQEGGYQQRPSGQQQGGHQQGR 241 Score = 28.1 bits (61), Expect = 5.3 Identities = 14/42 (33%), Positives = 19/42 (45%) Frame = +1 Query: 70 GAVKARRGGQEQDAAGRADRHPHGGEQERPAQGHGGAHAQER 195 G + R GQ+Q + + GG Q+RP G H Q R Sbjct: 177 GGYQQRPSGQQQGGHQQGRQGQEGGYQQRPPGQQQGGHQQGR 218 Score = 28.1 bits (61), Expect = 5.3 Identities = 14/42 (33%), Positives = 20/42 (47%) Frame = +1 Query: 70 GAVKARRGGQEQDAAGRADRHPHGGEQERPAQGHGGAHAQER 195 G + R GQ+Q + + GG Q+RP+ G H Q R Sbjct: 154 GGYQQRPPGQQQGGHQQGRQGQEGGYQQRPSGQQQGGHQQGR 195 Score = 27.3 bits (59), Expect = 9.0 Identities = 14/42 (33%), Positives = 19/42 (45%) Frame = +1 Query: 70 GAVKARRGGQEQDAAGRADRHPHGGEQERPAQGHGGAHAQER 195 G + R GQ+Q + + GG Q+RP G H Q R Sbjct: 246 GGYQQRPPGQQQGGHQQGRQGQEGGYQQRPPGQQQGGHEQGR 287 Score = 27.3 bits (59), Expect = 9.0 Identities = 14/42 (33%), Positives = 19/42 (45%) Frame = +1 Query: 70 GAVKARRGGQEQDAAGRADRHPHGGEQERPAQGHGGAHAQER 195 G + R GQ+Q + + GG Q+RP G H Q R Sbjct: 131 GGYQQRPPGQQQGGHQQGRQGQEGGYQQRPPGQQQGGHQQGR 172
>FIP1_HUMAN (Q6UN15) Pre-mRNA 3'-end-processing factor FIP1 (FIP1-like 1)| (Factor interacting with PAP) (hFip1) (Rearranged in hypereosinophilia) Length = 594 Score = 28.5 bits (62), Expect = 4.0 Identities = 21/58 (36%), Positives = 27/58 (46%) Frame = -2 Query: 363 GRPVTHCSSSASAPTFPRPPLSWSTAVELISWQVTPLPRNSPMPSMMVAPKSLRSSTF 190 G P TH P F PP + STA LI P P +P PS++ +S SS + Sbjct: 363 GAPPTHLPP----PPFLPPPPTVSTAPPLIPPPGFPPPPGAPPPSLIPTIESGHSSGY 416
>SCRT2_HUMAN (Q9NQ03) Transcriptional repressor scratch 2 (Scratch homolog 2| zinc finger protein) Length = 307 Score = 28.5 bits (62), Expect = 4.0 Identities = 15/38 (39%), Positives = 16/38 (42%) Frame = +1 Query: 70 GAVKARRGGQEQDAAGRADRHPHGGEQERPAQGHGGAH 183 G + RRGG DA G D GG R GG H Sbjct: 116 GRSRRRRGGGGGDAGGSGDAGGAGGRAGRAGAQAGGGH 153
>FIP1_RAT (Q5U317) Pre-mRNA 3'-end-processing factor FIP1 (FIP1-like 1)| Length = 536 Score = 28.5 bits (62), Expect = 4.0 Identities = 21/58 (36%), Positives = 27/58 (46%) Frame = -2 Query: 363 GRPVTHCSSSASAPTFPRPPLSWSTAVELISWQVTPLPRNSPMPSMMVAPKSLRSSTF 190 G P TH P F PP + STA LI P P +P PS++ +S SS + Sbjct: 303 GAPPTHLPP----PPFLPPPPTVSTAPPLIPPPGFPPPPGAPPPSLIPTIESGHSSGY 356
>PACC_SCLSC (Q9P413) pH-response transcription factor pacC/RIM101| Length = 625 Score = 25.8 bits (55), Expect(2) = 4.0 Identities = 22/67 (32%), Positives = 29/67 (43%) Frame = -2 Query: 393 PNLDSXVVSDGRPVTHCSSSASAPTFPRPPLSWSTAVELISWQVTPLPRNSPMPSMMVAP 214 P++ + S TH S S S+ T P S S V+ NSPM S ++P Sbjct: 382 PHVSTSYASAPMTATHSSHSVSSGTPALTPPSSS---------VSYTSGNSPMSSSGMSP 432 Query: 213 KSLRSST 193 S SST Sbjct: 433 ISRHSST 439 Score = 21.2 bits (43), Expect(2) = 4.0 Identities = 10/25 (40%), Positives = 14/25 (56%) Frame = -3 Query: 119 LPAASCSWPPLLAFTAPTNGTSTLF 45 LPA + + P + TAPT+ T F Sbjct: 447 LPAVTLGYSPHHSATAPTSTLGTNF 471
>VIV_ORYSA (P37398) Protein viviparous homolog| Length = 728 Score = 28.1 bits (61), Expect = 5.3 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 11/56 (19%) Frame = +1 Query: 64 LVGAVKARRGGQEQ-DAAGRADRHPHGGEQE-------RPA---QGHGGAHAQERA 198 L+ VK RR QEQ +++G +H HG ++ +PA G GG + E A Sbjct: 632 LIRGVKVRRAAQEQGNSSGAVGKHKHGSPEKPGVSSNTKPAGAEDGTGGDDSPEAA 687
>CFLAR_MOUSE (O35732) CASP8 and FADD-like apoptosis regulator precursor| (Cellular FLICE-like inhibitory protein) (c-FLIP) (Caspase-eight-related protein) (Casper) (Caspase-like apoptosis regulatory protein) (CLARP) (MACH-related inducer of toxicity) (MRIT Length = 484 Score = 28.1 bits (61), Expect = 5.3 Identities = 18/68 (26%), Positives = 32/68 (47%) Frame = +2 Query: 182 MRKNVLDLNDFGATIIDGIGEFLGKGVTCQLISSTAVDQDNGGRGKVGAEAELEQWVTGL 361 +R+N ++D+ +++ IGE L + L+ T + +D GRGK+ + V L Sbjct: 88 LRRNPHLVSDYRVLLME-IGESLDQNDVSSLVFLTRITRDYTGRGKIAKDKSFLDLVIEL 146 Query: 362 PSLTTXES 385 L S Sbjct: 147 EKLNLIAS 154
>DNAA_DESPS (Q6ARL8) Chromosomal replication initiator protein dnaA| Length = 479 Score = 28.1 bits (61), Expect = 5.3 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 2/65 (3%) Frame = -2 Query: 387 LDSXVVSDGRPVTHCSSSASAPTFPRPPLSWSTAVELISW--QVTPLPRNSPMPSMMVAP 214 L+ V R + H +S SAPTFP P +S ++ S + +PR +PS+ Sbjct: 80 LEKKAVPQLRSMMH-RTSTSAPTFPVPSVSSASTASTASTASSASSVPRQLRLPSVPKNN 138 Query: 213 KSLRS 199 S+R+ Sbjct: 139 ASIRA 143
>NPAS3_HUMAN (Q8IXF0) Neuronal PAS domain protein 3 (Neuronal PAS3) (Member of| PAS protein 6) (MOP6) Length = 933 Score = 27.7 bits (60), Expect = 6.9 Identities = 12/31 (38%), Positives = 18/31 (58%) Frame = -2 Query: 261 TPLPRNSPMPSMMVAPKSLRSSTFLRMSTTV 169 TP P S PS++ +L S F+RM +T+ Sbjct: 241 TPEPVESTSPSLLTTDNTLERSFFIRMKSTL 271
>SCR1_SCHPO (O14335) DNA-binding protein scr1| Length = 565 Score = 27.7 bits (60), Expect = 6.9 Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 4/58 (6%) Frame = -2 Query: 360 RPVTHCSSSASAPTFPRPPLSWSTAVELISWQVTPL--PRNSPM--PSMMVAPKSLRS 199 RPV+ CS++ S+PTF S + V + VTP PR PM PS + P S+RS Sbjct: 390 RPVSPCSTAPSSPTFSTRSFSPTPDVTPL---VTPAHSPRLRPMDDPSCVQLP-SIRS 443
>SDK2_MOUSE (Q6V4S5) Protein sidekick-2 precursor| Length = 2176 Score = 27.7 bits (60), Expect = 6.9 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 2/63 (3%) Frame = -2 Query: 396 RPNLDSXVVSDGRPVTHCSSSASAPTFPRPPLSWSTAVELISWQVTPLPRNSPMP--SMM 223 R LDS V+ V C +S + PRP ++W +++ LPR + + S++ Sbjct: 410 RGPLDSTVIDGMSVVLACETSGA----PRPAITWQKGERILASGSVQLPRFTLLESGSLL 465 Query: 222 VAP 214 ++P Sbjct: 466 ISP 468
>SDK2_CHICK (Q8AV57) Protein sidekick-2 precursor| Length = 2177 Score = 27.7 bits (60), Expect = 6.9 Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 2/62 (3%) Frame = -2 Query: 384 DSXVVSDGRPVTHCSSSASAPTFPRPPLSWSTAVELISWQVTPLPRNSPMP--SMMVAPK 211 DS V+ + +C +S + PRP ++W +++ LPR + + S++V+P Sbjct: 415 DSTVIDGMSVILNCETSGA----PRPAITWQKGERILASGSVQLPRFTLLESGSLLVSPA 470 Query: 210 SL 205 L Sbjct: 471 HL 472
>SRCH_RABIT (P16230) Sarcoplasmic reticulum histidine-rich calcium-binding| protein precursor Length = 852 Score = 27.7 bits (60), Expect = 6.9 Identities = 11/38 (28%), Positives = 21/38 (55%) Frame = +1 Query: 79 KARRGGQEQDAAGRADRHPHGGEQERPAQGHGGAHAQE 192 + +RGG E++ + H ++E +GHG + +QE Sbjct: 661 RVKRGGSEEEEEQKGTHHHSLEDEEDEEEGHGRSLSQE 698
>DOF52_ARATH (Q93ZL5) Dof zinc finger protein DOF5.2 (AtDOF5.2)| Length = 457 Score = 27.7 bits (60), Expect = 6.9 Identities = 10/23 (43%), Positives = 13/23 (56%) Frame = -2 Query: 324 PTFPRPPLSWSTAVELISWQVTP 256 P FP PP +W A +SW + P Sbjct: 286 PCFPGPPPTWPYAWNGVSWTILP 308
>CYTSA_CHICK (Q2KN97) Cytospin-A| Length = 1118 Score = 27.7 bits (60), Expect = 6.9 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 2/77 (2%) Frame = -2 Query: 384 DSXVVSDGRPVTHCSSSASAPTFPRPPL--SWSTAVELISWQVTPLPRNSPMPSMMVAPK 211 D + G ++ SS++S PT L S+ +A ++ S +PR PS M P Sbjct: 818 DLAALRQGMGLSRRSSTSSEPTPTVKTLIKSFDSASQVPSPAAATIPRTPLSPSPMKTPP 877 Query: 210 SLRSSTFLRMSTTVPLS 160 + S R S + P+S Sbjct: 878 AAAVSPMQRHSISGPIS 894
>WC1_NEUCR (Q01371) White collar 1 protein (WC1)| Length = 1167 Score = 27.3 bits (59), Expect = 9.0 Identities = 17/62 (27%), Positives = 26/62 (41%) Frame = -2 Query: 393 PNLDSXVVSDGRPVTHCSSSASAPTFPRPPLSWSTAVELISWQVTPLPRNSPMPSMMVAP 214 P + + PV+ ++S A TF P LS +T I P N+P P+ + Sbjct: 288 PGVSNFAQGMATPVSQDAASTPATTFQSPSLSATTQTIRIGPPPPPSVTNAPTPAPFTST 347 Query: 213 KS 208 S Sbjct: 348 PS 349
>RL2_XANCP (Q8PC46) 50S ribosomal protein L2| Length = 275 Score = 27.3 bits (59), Expect = 9.0 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%) Frame = +1 Query: 79 KARRGGQE--QDAAGRADRHPHGGEQERPAQGH 171 K RRG + + AA A+ HPHGG + + QG+ Sbjct: 211 KRRRGVRPTVRGAAMNANDHPHGGGEAKAGQGN 243
>MUC2_HUMAN (Q02817) Mucin-2 precursor (Intestinal mucin 2)| Length = 5179 Score = 27.3 bits (59), Expect = 9.0 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 2/68 (2%) Frame = -2 Query: 357 PVTHCSSSASAP--TFPRPPLSWSTAVELISWQVTPLPRNSPMPSMMVAPKSLRSSTFLR 184 P+T +S+ + P T P PP + +T TP P +P P P ++T Sbjct: 1625 PITPPTSTTTLPPTTTPSPPPTTTT---------TPPPTTTPSPPTTTTPSPPITTTTTP 1675 Query: 183 MSTTVPLS 160 TT P S Sbjct: 1676 PPTTTPSS 1683
>CI040_MOUSE (Q8VCE4) Protein C9orf40 homolog| Length = 163 Score = 27.3 bits (59), Expect = 9.0 Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 4/46 (8%) Frame = +1 Query: 52 VLVPLVGAVKARRGG----QEQDAAGRADRHPHGGEQERPAQGHGG 177 ++ A + RRGG QE R P GEQE P GG Sbjct: 49 IMAEPASAPRKRRGGGDDRQELQGCSREPGEPPPGEQEEPRAAGGG 94
>CHD1_MOUSE (P40201) Chromodomain-helicase-DNA-binding protein 1 (EC 3.6.1.-)| (ATP-dependent helicase CHD1) (CHD-1) Length = 1711 Score = 27.3 bits (59), Expect = 9.0 Identities = 15/46 (32%), Positives = 23/46 (50%) Frame = +2 Query: 98 KNKMLLGGLIDTLTGANKSARLKGTVVLMRKNVLDLNDFGATIIDG 235 K+K LGGL G +++ RLK L+ K ++D +I G Sbjct: 596 KDKAFLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITG 641
>CHD1_HUMAN (O14646) Chromodomain-helicase-DNA-binding protein 1 (EC 3.6.1.-)| (ATP-dependent helicase CHD1) (CHD-1) Length = 1709 Score = 27.3 bits (59), Expect = 9.0 Identities = 15/46 (32%), Positives = 23/46 (50%) Frame = +2 Query: 98 KNKMLLGGLIDTLTGANKSARLKGTVVLMRKNVLDLNDFGATIIDG 235 K+K LGGL G +++ RLK L+ K ++D +I G Sbjct: 598 KDKAFLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITG 643
>GEI8_CAEEL (P34333) Gex-3-interacting protein 8| Length = 1780 Score = 27.3 bits (59), Expect = 9.0 Identities = 18/41 (43%), Positives = 21/41 (51%) Frame = -2 Query: 342 SSSASAPTFPRPPLSWSTAVELISWQVTPLPRNSPMPSMMV 220 SSSASAP F +PP + S A TP+ MPS V Sbjct: 1630 SSSASAPQFLQPPAAASIAAP------TPISTPHAMPSPSV 1664
>SDHD_BURPS (Q63IF8) Probable D-serine dehydratase (EC 4.3.1.18) (D-serine| deaminase) (DSD) Length = 445 Score = 27.3 bits (59), Expect = 9.0 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 3/53 (5%) Frame = +1 Query: 40 VKNSVLVPLVGAVKARRGGQEQDAAGR--ADRHP-HGGEQERPAQGHGGAHAQ 189 VK +P+ G++KAR G E A A+RH G + +R A G A A+ Sbjct: 98 VKRDDALPVAGSIKARGGFHEVLALAESIAERHGLAGADTDRRALASGAARAR 150
>CSP_PLAKU (P04922) Circumsporozoite protein precursor (CS)| Length = 351 Score = 27.3 bits (59), Expect = 9.0 Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 1/37 (2%) Frame = +1 Query: 70 GAVKARRGGQEQDAAGRADRHPHGGEQ-ERPAQGHGG 177 G A G EQ AAG P G + E+PA G GG Sbjct: 187 GEQPAAGAGGEQPAAGAGGEQPAAGARGEQPAAGAGG 223 Score = 27.3 bits (59), Expect = 9.0 Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 1/37 (2%) Frame = +1 Query: 70 GAVKARRGGQEQDAAGRADRHPHGGEQ-ERPAQGHGG 177 G A G EQ AAG P G + E+PA G GG Sbjct: 160 GEQPAAGAGGEQPAAGAGGEQPAAGARGEQPAAGAGG 196 Score = 27.3 bits (59), Expect = 9.0 Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 1/37 (2%) Frame = +1 Query: 70 GAVKARRGGQEQDAAGRADRHPHGGEQ-ERPAQGHGG 177 G A G EQ AAG P G + E+PA G GG Sbjct: 106 GEQPAAGAGGEQPAAGAGGEQPAAGARGEQPAAGAGG 142 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.313 0.133 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 42,453,900 Number of Sequences: 219361 Number of extensions: 830605 Number of successful extensions: 2607 Number of sequences better than 10.0: 47 Number of HSP's better than 10.0 without gapping: 2417 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2578 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 1370455656 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits)
