ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl18b08 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AL606457.3|OSJN00002 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0018M05, complete sequence Length = 164943 Score = 50.1 bits (25), Expect = 0.003 Identities = 25/25 (100%) Strand = Plus / Minus Query: 53 tccggatcgccgccatggccgccgc 77 ||||||||||||||||||||||||| Sbjct: 148999 tccggatcgccgccatggccgccgc 148975
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 50.1 bits (25), Expect = 0.003 Identities = 25/25 (100%) Strand = Plus / Minus Query: 53 tccggatcgccgccatggccgccgc 77 ||||||||||||||||||||||||| Sbjct: 34531515 tccggatcgccgccatggccgccgc 34531491 Score = 40.1 bits (20), Expect = 2.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 64 gccatggccgccgcagccaccgctgccg 91 |||||||||||||| |||||||| |||| Sbjct: 24861919 gccatggccgccgccgccaccgccgccg 24861892 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 cgccgccatggccgccgcag 79 |||||||||||||||||||| Sbjct: 19805393 cgccgccatggccgccgcag 19805412
>dbj|AK099138.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023054H04, full insert sequence Length = 2756 Score = 50.1 bits (25), Expect = 0.003 Identities = 25/25 (100%) Strand = Plus / Plus Query: 53 tccggatcgccgccatggccgccgc 77 ||||||||||||||||||||||||| Sbjct: 77 tccggatcgccgccatggccgccgc 101
>dbj|AK067609.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013112I09, full insert sequence Length = 2819 Score = 50.1 bits (25), Expect = 0.003 Identities = 25/25 (100%) Strand = Plus / Plus Query: 53 tccggatcgccgccatggccgccgc 77 ||||||||||||||||||||||||| Sbjct: 123 tccggatcgccgccatggccgccgc 147
>emb|AL732351.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0103C06, complete sequence Length = 104146 Score = 50.1 bits (25), Expect = 0.003 Identities = 25/25 (100%) Strand = Plus / Minus Query: 53 tccggatcgccgccatggccgccgc 77 ||||||||||||||||||||||||| Sbjct: 68020 tccggatcgccgccatggccgccgc 67996
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 46.1 bits (23), Expect = 0.047 Identities = 23/23 (100%) Strand = Plus / Plus Query: 58 atcgccgccatggccgccgcagc 80 ||||||||||||||||||||||| Sbjct: 28801417 atcgccgccatggccgccgcagc 28801439
>dbj|AP005445.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0028E05 Length = 157631 Score = 46.1 bits (23), Expect = 0.047 Identities = 23/23 (100%) Strand = Plus / Plus Query: 58 atcgccgccatggccgccgcagc 80 ||||||||||||||||||||||| Sbjct: 109192 atcgccgccatggccgccgcagc 109214
>emb|X51513.1|RTPAL2 Rhodosporidium toruloides pal gene for phenylalanine ammonia-lyase (EC 4.3.1.5) Length = 3340 Score = 44.1 bits (22), Expect = 0.18 Identities = 22/22 (100%) Strand = Plus / Minus Query: 153 gccggcggcgaaggagaaggcg 174 |||||||||||||||||||||| Sbjct: 2719 gccggcggcgaaggagaaggcg 2698
>emb|X14153.1|DMKNR1 Drosophila Knrl gene for knirps-related protein Length = 3504 Score = 44.1 bits (22), Expect = 0.18 Identities = 22/22 (100%) Strand = Plus / Minus Query: 69 ggccgccgcagccaccgctgcc 90 |||||||||||||||||||||| Sbjct: 1509 ggccgccgcagccaccgctgcc 1488
>emb|X12702.1|RTPALGNA R.toruloides mRNA for L-phenylalanine ammonia-lyase (PAL) Length = 2315 Score = 44.1 bits (22), Expect = 0.18 Identities = 22/22 (100%) Strand = Plus / Minus Query: 153 gccggcggcgaaggagaaggcg 174 |||||||||||||||||||||| Sbjct: 1818 gccggcggcgaaggagaaggcg 1797
>gb|AC010117.6| Drosophila melanogaster 3L BAC RP98-21J2 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 178965 Score = 44.1 bits (22), Expect = 0.18 Identities = 22/22 (100%) Strand = Plus / Minus Query: 69 ggccgccgcagccaccgctgcc 90 |||||||||||||||||||||| Sbjct: 97827 ggccgccgcagccaccgctgcc 97806
>gb|AC091776.19| Chlamydomonas reinhardtii clone cr-4i21, complete sequence Length = 48498 Score = 44.1 bits (22), Expect = 0.18 Identities = 28/30 (93%) Strand = Plus / Minus Query: 60 cgccgccatggccgccgcagccaccgctgc 89 |||||||| ||||||||| ||||||||||| Sbjct: 33060 cgccgccacggccgccgccgccaccgctgc 33031
>gb|AC090435.28| Chlamydomonas reinhardtii clone cr-32m22, complete sequence Length = 79677 Score = 44.1 bits (22), Expect = 0.18 Identities = 28/30 (93%) Strand = Plus / Minus Query: 60 cgccgccatggccgccgcagccaccgctgc 89 |||||||| ||||||||| ||||||||||| Sbjct: 11773 cgccgccacggccgccgccgccaccgctgc 11744
>ref|NM_176374.1| Drosophila melanogaster knirps-like CG4761-RA (knrl), mRNA Length = 3786 Score = 44.1 bits (22), Expect = 0.18 Identities = 22/22 (100%) Strand = Plus / Minus Query: 69 ggccgccgcagccaccgctgcc 90 |||||||||||||||||||||| Sbjct: 1834 ggccgccgcagccaccgctgcc 1813
>gb|AY075383.1| Drosophila melanogaster LD23140 full length cDNA Length = 2818 Score = 44.1 bits (22), Expect = 0.18 Identities = 22/22 (100%) Strand = Plus / Minus Query: 69 ggccgccgcagccaccgctgcc 90 |||||||||||||||||||||| Sbjct: 1832 ggccgccgcagccaccgctgcc 1811
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 44.1 bits (22), Expect = 0.18 Identities = 22/22 (100%) Strand = Plus / Plus Query: 68 tggccgccgcagccaccgctgc 89 |||||||||||||||||||||| Sbjct: 4765326 tggccgccgcagccaccgctgc 4765347
>gb|BC102152.1| Bos taurus cornichon homolog 4 (Drosophila), mRNA (cDNA clone MGC:127199 IMAGE:7945863), complete cds Length = 687 Score = 44.1 bits (22), Expect = 0.18 Identities = 22/22 (100%) Strand = Plus / Minus Query: 70 gccgccgcagccaccgctgccg 91 |||||||||||||||||||||| Sbjct: 69 gccgccgcagccaccgctgccg 48
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 44.1 bits (22), Expect = 0.18 Identities = 22/22 (100%) Strand = Plus / Plus Query: 56 ggatcgccgccatggccgccgc 77 |||||||||||||||||||||| Sbjct: 19425372 ggatcgccgccatggccgccgc 19425393 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 68 tggccgccgcagccaccgctgccg 91 |||||||||| ||||||||||||| Sbjct: 13193206 tggccgccgccgccaccgctgccg 13193183 Score = 40.1 bits (20), Expect = 2.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 62 ccgccatggccgccgcagccaccgctgccgac 93 |||||||||||||||| ||| |||| |||||| Sbjct: 1575833 ccgccatggccgccgccgccgccgccgccgac 1575802
>dbj|AP005185.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0409B11 Length = 168354 Score = 44.1 bits (22), Expect = 0.18 Identities = 22/22 (100%) Strand = Plus / Plus Query: 56 ggatcgccgccatggccgccgc 77 |||||||||||||||||||||| Sbjct: 114910 ggatcgccgccatggccgccgc 114931
>gb|AE003591.4| Drosophila melanogaster chromosome 3L, section 72 of 83 of the complete sequence Length = 301136 Score = 44.1 bits (22), Expect = 0.18 Identities = 22/22 (100%) Strand = Plus / Plus Query: 69 ggccgccgcagccaccgctgcc 90 |||||||||||||||||||||| Sbjct: 271375 ggccgccgcagccaccgctgcc 271396
>ref|NM_001034338.1| Bos taurus cornichon homolog 4 (Drosophila) (CNIH4), mRNA Length = 687 Score = 44.1 bits (22), Expect = 0.18 Identities = 22/22 (100%) Strand = Plus / Minus Query: 70 gccgccgcagccaccgctgccg 91 |||||||||||||||||||||| Sbjct: 69 gccgccgcagccaccgctgccg 48
>gb|M18261.1|RHDPAL R. toruloides pal gene encoding phenylalanine amonia-lyase, complete cds Length = 2986 Score = 44.1 bits (22), Expect = 0.18 Identities = 22/22 (100%) Strand = Plus / Minus Query: 153 gccggcggcgaaggagaaggcg 174 |||||||||||||||||||||| Sbjct: 2487 gccggcggcgaaggagaaggcg 2466
>ref|XM_480397.1| Oryza sativa (japonica cultivar-group), mRNA Length = 855 Score = 42.1 bits (21), Expect = 0.73 Identities = 21/21 (100%) Strand = Plus / Minus Query: 62 ccgccatggccgccgcagcca 82 ||||||||||||||||||||| Sbjct: 342 ccgccatggccgccgcagcca 322
>ref|NM_193671.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 231 Score = 42.1 bits (21), Expect = 0.73 Identities = 21/21 (100%) Strand = Plus / Minus Query: 62 ccgccatggccgccgcagcca 82 ||||||||||||||||||||| Sbjct: 155 ccgccatggccgccgcagcca 135
>gb|AC134930.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0042J17, complete sequence Length = 124139 Score = 42.1 bits (21), Expect = 0.73 Identities = 21/21 (100%) Strand = Plus / Plus Query: 62 ccgccatggccgccgcagcca 82 ||||||||||||||||||||| Sbjct: 80522 ccgccatggccgccgcagcca 80542
>gb|AC113107.15| Mus musculus chromosome 10, clone RP23-325G13, complete sequence Length = 207239 Score = 42.1 bits (21), Expect = 0.73 Identities = 24/25 (96%) Strand = Plus / Minus Query: 60 cgccgccatggccgccgcagccacc 84 |||||||| |||||||||||||||| Sbjct: 30226 cgccgccagggccgccgcagccacc 30202
>gb|BC062168.1| Mus musculus solute carrier family 25 (mitochondrial carrier, Graves disease autoantigen), member 16, mRNA (cDNA clone IMAGE:30133798), complete cds Length = 1745 Score = 42.1 bits (21), Expect = 0.73 Identities = 24/25 (96%) Strand = Plus / Minus Query: 60 cgccgccatggccgccgcagccacc 84 |||||||| |||||||||||||||| Sbjct: 121 cgccgccagggccgccgcagccacc 97
>dbj|AP004611.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1005_B10 Length = 142680 Score = 42.1 bits (21), Expect = 0.73 Identities = 21/21 (100%) Strand = Plus / Minus Query: 62 ccgccatggccgccgcagcca 82 ||||||||||||||||||||| Sbjct: 33730 ccgccatggccgccgcagcca 33710
>dbj|AK030865.1| Mus musculus adult male thymus cDNA, RIKEN full-length enriched library, clone:5830435B21 product:GRAVE'S DISEASE CARRIER PROTEIN (GDC) (MITOCHONDRIAL SOLUTE CARRIER PROTEIN HOMOLOG) homolog [Bos taurus], full insert sequence Length = 3141 Score = 42.1 bits (21), Expect = 0.73 Identities = 24/25 (96%) Strand = Plus / Minus Query: 60 cgccgccatggccgccgcagccacc 84 |||||||| |||||||||||||||| Sbjct: 155 cgccgccagggccgccgcagccacc 131
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 0.73 Identities = 21/21 (100%) Strand = Plus / Plus Query: 62 ccgccatggccgccgcagcca 82 ||||||||||||||||||||| Sbjct: 4876375 ccgccatggccgccgcagcca 4876395 Score = 42.1 bits (21), Expect = 0.73 Identities = 21/21 (100%) Strand = Plus / Plus Query: 62 ccgccatggccgccgcagcca 82 ||||||||||||||||||||| Sbjct: 3424556 ccgccatggccgccgcagcca 3424576
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 0.73 Identities = 21/21 (100%) Strand = Plus / Plus Query: 62 ccgccatggccgccgcagcca 82 ||||||||||||||||||||| Sbjct: 21363200 ccgccatggccgccgcagcca 21363220
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 0.73 Identities = 21/21 (100%) Strand = Plus / Plus Query: 62 ccgccatggccgccgcagcca 82 ||||||||||||||||||||| Sbjct: 4240248 ccgccatggccgccgcagcca 4240268 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 59 tcgccgccatggccgccgcagcca 82 ||||||||||||||||||| |||| Sbjct: 5536906 tcgccgccatggccgccgccgcca 5536883
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 0.73 Identities = 21/21 (100%) Strand = Plus / Minus Query: 62 ccgccatggccgccgcagcca 82 ||||||||||||||||||||| Sbjct: 18646284 ccgccatggccgccgcagcca 18646264 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 150 cgcgccggcggcgaaggaga 169 |||||||||||||||||||| Sbjct: 34306403 cgcgccggcggcgaaggaga 34306422
>gb|AC153942.8| Mus musculus 10 BAC RP24-174M19 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 146201 Score = 42.1 bits (21), Expect = 0.73 Identities = 24/25 (96%) Strand = Plus / Plus Query: 60 cgccgccatggccgccgcagccacc 84 |||||||| |||||||||||||||| Sbjct: 26935 cgccgccagggccgccgcagccacc 26959
>dbj|AP003276.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0516D04 Length = 140491 Score = 42.1 bits (21), Expect = 0.73 Identities = 21/21 (100%) Strand = Plus / Minus Query: 62 ccgccatggccgccgcagcca 82 ||||||||||||||||||||| Sbjct: 69557 ccgccatggccgccgcagcca 69537
>dbj|AP004838.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0504A05 Length = 148360 Score = 42.1 bits (21), Expect = 0.73 Identities = 21/21 (100%) Strand = Plus / Plus Query: 62 ccgccatggccgccgcagcca 82 ||||||||||||||||||||| Sbjct: 57062 ccgccatggccgccgcagcca 57082
>dbj|AP004646.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1122_A12 Length = 149011 Score = 42.1 bits (21), Expect = 0.73 Identities = 21/21 (100%) Strand = Plus / Plus Query: 62 ccgccatggccgccgcagcca 82 ||||||||||||||||||||| Sbjct: 35629 ccgccatggccgccgcagcca 35649
>dbj|AP005440.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0056D04 Length = 158118 Score = 42.1 bits (21), Expect = 0.73 Identities = 21/21 (100%) Strand = Plus / Plus Query: 62 ccgccatggccgccgcagcca 82 ||||||||||||||||||||| Sbjct: 81169 ccgccatggccgccgcagcca 81189
>dbj|AP004698.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0498E12 Length = 153523 Score = 42.1 bits (21), Expect = 0.73 Identities = 21/21 (100%) Strand = Plus / Plus Query: 62 ccgccatggccgccgcagcca 82 ||||||||||||||||||||| Sbjct: 57975 ccgccatggccgccgcagcca 57995
>gb|BC025015.1| Mus musculus solute carrier family 25 (mitochondrial carrier, Graves disease autoantigen), member 16, mRNA (cDNA clone IMAGE:3993106) Length = 3016 Score = 42.1 bits (21), Expect = 0.73 Identities = 24/25 (96%) Strand = Plus / Minus Query: 60 cgccgccatggccgccgcagccacc 84 |||||||| |||||||||||||||| Sbjct: 66 cgccgccagggccgccgcagccacc 42
>ref|NM_175194.2| Mus musculus solute carrier family 25 (mitochondrial carrier, Graves disease autoantigen), member 16 (Slc25a16), mRNA Length = 3141 Score = 42.1 bits (21), Expect = 0.73 Identities = 24/25 (96%) Strand = Plus / Minus Query: 60 cgccgccatggccgccgcagccacc 84 |||||||| |||||||||||||||| Sbjct: 155 cgccgccagggccgccgcagccacc 131
>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome Length = 3997420 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 50 tcctccggatcgccgccatg 69 |||||||||||||||||||| Sbjct: 3429651 tcctccggatcgccgccatg 3429670
>ref|XM_464493.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2610 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 59 tcgccgccatggccgccgcagcca 82 ||||||||||||||||||| |||| Sbjct: 37 tcgccgccatggccgccgccgcca 60
>ref|NM_188199.1| Oryza sativa (japonica cultivar-group), mRNA Length = 312 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 68 tggccgccgcagccaccgctgccg 91 |||||||||| ||||||||||||| Sbjct: 206 tggccgccgccgccaccgctgccg 183
>ref|XM_472356.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 750 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 cgccgccatggccgccgcag 79 |||||||||||||||||||| Sbjct: 547 cgccgccatggccgccgcag 528
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 66 catggccgccgcagccaccg 85 |||||||||||||||||||| Sbjct: 5040755 catggccgccgcagccaccg 5040774
>gb|AC164292.4| Mus musculus BAC clone RP24-177C20 from chromosome 3, complete sequence Length = 185822 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 126 tgatgccaagaccgaggccataga 149 |||||||||| ||||||||||||| Sbjct: 142930 tgatgccaaggccgaggccataga 142953
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 ggcgaaggagaaggcgaccg 178 |||||||||||||||||||| Sbjct: 2166072 ggcgaaggagaaggcgaccg 2166091
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 ggcgaaggagaaggcgaccg 178 |||||||||||||||||||| Sbjct: 3550743 ggcgaaggagaaggcgaccg 3550762
>emb|Z36773.1|TPNAPG T.pantotropha (LMD82.5) dctM, napA, napB, napC, napD, napE genes Length = 6040 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 ggatcgccgccatggccgcc 75 |||||||||||||||||||| Sbjct: 1606 ggatcgccgccatggccgcc 1625
>ref|XM_946768.1| Theileria annulata strain Ankara hypothetical protein (TA15485) partial mRNA Length = 4644 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 115 aagctatcccttgatgccaa 134 |||||||||||||||||||| Sbjct: 2266 aagctatcccttgatgccaa 2285
>gb|AC010184.18| Homo sapiens 3 BAC RP11-438D8 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 190580 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 acgcgccggcggcgaaggag 168 |||||||||||||||||||| Sbjct: 137388 acgcgccggcggcgaaggag 137369
>emb|BX572599.1| Rhodopseudomonas palustris CGA009 complete genome; segment 7/16 Length = 349142 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 76 gcagccaccgctgccgacca 95 |||||||||||||||||||| Sbjct: 273784 gcagccaccgctgccgacca 273765
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 ggcgaaggagaaggcgaccg 178 |||||||||||||||||||| Sbjct: 3292135 ggcgaaggagaaggcgaccg 3292154
>emb|AL731642.3|OSJN00289 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0014D23, complete sequence Length = 133759 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 cgccgccatggccgccgcag 79 |||||||||||||||||||| Sbjct: 93855 cgccgccatggccgccgcag 93874
>emb|AL132797.2|DMBN25G24 Drosophila melanogaster BAC clone BACN25G24 Length = 38889 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 127 gatgccaagaccgaggccatagac 150 |||||||||||||| ||||||||| Sbjct: 4342 gatgccaagaccgaagccatagac 4365
>gb|AE005773.1| Caulobacter crescentus CB15 section 99 of 359 of the complete genome Length = 10431 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 56 ggatcgccgccatggccgcc 75 |||||||||||||||||||| Sbjct: 2010 ggatcgccgccatggccgcc 1991
>gb|AY075095.1| Drosophila melanogaster pygopus (pygo) mRNA, complete cds Length = 4079 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 70 gccgccgcagccaccgctgc 89 |||||||||||||||||||| Sbjct: 727 gccgccgcagccaccgctgc 708
>ref|NM_143615.2| Drosophila melanogaster pygopus CG11518-RA (pygo), mRNA Length = 4505 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 70 gccgccgcagccaccgctgc 89 |||||||||||||||||||| Sbjct: 1169 gccgccgcagccaccgctgc 1150
>gb|AF457206.1| Drosophila melanogaster pygopus mRNA, complete cds Length = 2448 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 70 gccgccgcagccaccgctgc 89 |||||||||||||||||||| Sbjct: 176 gccgccgcagccaccgctgc 157
>gb|AC037426.12| Oryza sativa chromosome 10 BAC OSJNBb0014I11 genomic sequence, complete sequence Length = 135510 Score = 40.1 bits (20), Expect = 2.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 64 gccatggccgccgcagccaccgctgccg 91 |||||||||||||| ||| ||||||||| Sbjct: 67209 gccatggccgccgccgccgccgctgccg 67236
>gb|AC104146.4| Drosophila melanogaster X BAC RP98-32O19 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 177724 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 127 gatgccaagaccgaggccatagac 150 |||||||||||||| ||||||||| Sbjct: 60859 gatgccaagaccgaagccatagac 60882
>gb|AY058500.1| Drosophila melanogaster LD18280 full length cDNA Length = 4516 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 70 gccgccgcagccaccgctgc 89 |||||||||||||||||||| Sbjct: 1169 gccgccgcagccaccgctgc 1150
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 2.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 64 gccatggccgccgcagccaccgctgccg 91 |||||||||||||| ||| ||||||||| Sbjct: 21267150 gccatggccgccgccgccgccgctgccg 21267123
>gb|AC008310.5|AC008310 Drosophila melanogaster, chromosome 3R, region 100C-100D, BAC clone BACR16C04, complete sequence Length = 159528 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 gccgccgcagccaccgctgc 89 |||||||||||||||||||| Sbjct: 25 gccgccgcagccaccgctgc 44
>gb|AC009349.6|AC009349 Drosophila melanogaster, chromosome 3R, region 100C-100C, BAC clone BACR10O09, complete sequence Length = 165555 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 gccgccgcagccaccgctgc 89 |||||||||||||||||||| Sbjct: 142649 gccgccgcagccaccgctgc 142668
>dbj|AP003073.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0702B09 Length = 172541 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 150 cgcgccggcggcgaaggaga 169 |||||||||||||||||||| Sbjct: 142089 cgcgccggcggcgaaggaga 142108
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 ggatcgccgccatggccgcc 75 |||||||||||||||||||| Sbjct: 7947492 ggatcgccgccatggccgcc 7947511 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 155 cggcggcgaaggagaaggcgaccg 178 |||||||||||| ||||||||||| Sbjct: 2499572 cggcggcgaaggcgaaggcgaccg 2499595
>dbj|AP005168.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0066B06 Length = 154025 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 68 tggccgccgcagccaccgctgccg 91 |||||||||| ||||||||||||| Sbjct: 111533 tggccgccgccgccaccgctgccg 111510
>dbj|AP004812.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0026H03 Length = 151827 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 59 tcgccgccatggccgccgcagcca 82 ||||||||||||||||||| |||| Sbjct: 81641 tcgccgccatggccgccgccgcca 81618
>dbj|AP006172.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0088O14 Length = 179483 Score = 40.1 bits (20), Expect = 2.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 62 ccgccatggccgccgcagccaccgctgccgac 93 |||||||||||||||| ||| |||| |||||| Sbjct: 44488 ccgccatggccgccgccgccgccgccgccgac 44457
>dbj|AK120287.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013050B17, full insert sequence Length = 2614 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 59 tcgccgccatggccgccgcagcca 82 ||||||||||||||||||| |||| Sbjct: 37 tcgccgccatggccgccgccgcca 60
>emb|AJ328584.1|HSA328584 Homo sapiens genomic sequence surrounding NotI site, clone NR1-OE16C Length = 754 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 71 ccgccgcagccaccgctgccgacc 94 ||||||| |||||||||||||||| Sbjct: 40 ccgccgccgccaccgctgccgacc 63
>dbj|AK099054.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013149O10, full insert sequence Length = 1594 Score = 40.1 bits (20), Expect = 2.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 64 gccatggccgccgcagccaccgctgccg 91 |||||||||||||| |||||||| |||| Sbjct: 29 gccatggccgccgccgccaccgccgccg 56
>dbj|AK069158.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023008B01, full insert sequence Length = 3130 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 150 cgcgccggcggcgaaggaga 169 |||||||||||||||||||| Sbjct: 173 cgcgccggcggcgaaggaga 154
>dbj|AK063684.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-119-E11, full insert sequence Length = 800 Score = 40.1 bits (20), Expect = 2.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 64 gccatggccgccgcagccaccgctgccg 91 |||||||||||||| ||| ||||||||| Sbjct: 213 gccatggccgccgccgccgccgctgccg 186
>dbj|AK059415.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-D05, full insert sequence Length = 1595 Score = 40.1 bits (20), Expect = 2.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 64 gccatggccgccgcagccaccgctgccg 91 |||||||||||||| |||||||| |||| Sbjct: 28 gccatggccgccgccgccaccgccgccg 55
>gb|AY109005.1| Zea mays PCO121752 mRNA sequence Length = 921 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 58 atcgccgccatggccgccgc 77 |||||||||||||||||||| Sbjct: 94 atcgccgccatggccgccgc 113
>gb|AE003778.3| Drosophila melanogaster chromosome 3R, section 116 of 118 of the complete sequence Length = 225974 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 gccgccgcagccaccgctgc 89 |||||||||||||||||||| Sbjct: 214846 gccgccgcagccaccgctgc 214865
>gb|AE003423.2| Drosophila melanogaster chromosome X, section 7 of 74 of the complete sequence Length = 292830 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 127 gatgccaagaccgaggccatagac 150 |||||||||||||| ||||||||| Sbjct: 20538 gatgccaagaccgaagccatagac 20561
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 151 gcgccggcggcgaaggagaaggcg 174 ||||||||||||||||||| |||| Sbjct: 1788093 gcgccggcggcgaaggagagggcg 1788116
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 2.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 64 gccatggccgccgcagccaccgctgccg 91 |||||||||||||| ||| ||||||||| Sbjct: 21278414 gccatggccgccgccgccgccgctgccg 21278387
>emb|AL939130.1|SCO939130 Streptomyces coelicolor A3(2) complete genome; segment 27/29 Length = 303450 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 atcgccgccatggccgccgc 77 |||||||||||||||||||| Sbjct: 144057 atcgccgccatggccgccgc 144038
>emb|AL606627.3|OSJN00052 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0067K08, complete sequence Length = 170765 Score = 40.1 bits (20), Expect = 2.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 64 gccatggccgccgcagccaccgctgccg 91 |||||||||||||| |||||||| |||| Sbjct: 123635 gccatggccgccgccgccaccgccgccg 123608
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 59 tcgccgccatggccgccgcagcca 82 ||||||||||||||||||| |||| Sbjct: 837249 tcgccgccatggccgccgccgcca 837226
>gb|AY858986.1| Chlamydomonas incerta minus agglutinin (SAD1) gene, complete cds Length = 21171 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 ccgccatggccgccgcagcc 81 |||||||||||||||||||| Sbjct: 18914 ccgccatggccgccgcagcc 18895
>dbj|AP004336.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0498D08, complete sequence Length = 53801 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 68 tggccgccgcagccaccgctgccg 91 |||||||||| ||||||||||||| Sbjct: 9528 tggccgccgccgccaccgctgccg 9505 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,394,651 Number of Sequences: 3902068 Number of extensions: 1394651 Number of successful extensions: 116017 Number of sequences better than 10.0: 87 Number of HSP's better than 10.0 without gapping: 94 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 112676 Number of HSP's gapped (non-prelim): 3341 length of query: 225 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 203 effective length of database: 17,147,199,772 effective search space: 3480881553716 effective search space used: 3480881553716 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
