ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl18a12 |
|---|---|
| Clone Library Name | barley_pub |
>TUP1_KLULA (P56094) Transcriptional repressor TUP1| Length = 682 Score = 38.1 bits (87), Expect = 0.005 Identities = 24/81 (29%), Positives = 38/81 (46%) Frame = +3 Query: 117 SVAWFPGGQHVVTASAADVAILIHDXXXXXXXXXXXXXXXXXXIRLHKDGVTAVALAPGY 296 S+ +FP G +V+ S D + I D +DGVT VA++PG Sbjct: 453 SLDYFPSGNKLVSGSG-DRTVRIWDLTTGTCSLTLSI----------EDGVTTVAVSPGE 501 Query: 297 GSSLASGSIDHSVKFYSFPDG 359 G +A+GS+D +V+ + G Sbjct: 502 GKFIAAGSLDRTVRVWDSDTG 522
>TUP1_YEAST (P16649) Glucose repression regulatory protein TUP1 (Flocculation| suppressor protein) (Repressor AER2) Length = 713 Score = 37.0 bits (84), Expect = 0.012 Identities = 24/81 (29%), Positives = 38/81 (46%) Frame = +3 Query: 117 SVAWFPGGQHVVTASAADVAILIHDXXXXXXXXXXXXXXXXXXIRLHKDGVTAVALAPGY 296 S+ +FP G +V+ S D + I D +DGVT VA++PG Sbjct: 490 SLDYFPSGDKLVSGSG-DRTVRIWDLRTGQCSLTLSI----------EDGVTTVAVSPGD 538 Query: 297 GSSLASGSIDHSVKFYSFPDG 359 G +A+GS+D +V+ + G Sbjct: 539 GKYIAAGSLDRAVRVWDSETG 559 Score = 29.3 bits (64), Expect = 2.5 Identities = 22/77 (28%), Positives = 32/77 (41%) Frame = +3 Query: 117 SVAWFPGGQHVVTASAADVAILIHDXXXXXXXXXXXXXXXXXXIRLHKDGVTAVALAPGY 296 +VA PG + A + D A+ + D HKD V +V Sbjct: 531 TVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTG--HKDSVYSVVFTRD- 587 Query: 297 GSSLASGSIDHSVKFYS 347 G S+ SGS+D SVK ++ Sbjct: 588 GQSVVSGSLDRSVKLWN 604
>HETE1_PODAN (Q00808) Vegetatible incompatibility protein HET-E-1| Length = 1356 Score = 32.7 bits (73), Expect = 0.22 Identities = 31/105 (29%), Positives = 43/105 (40%) Frame = +3 Query: 48 AMKGRAVKLREAHKAGSGSPAFCSVAWFPGGQHVVTASAADVAILIHDXXXXXXXXXXXX 227 A+ G + E H + SVA+ P GQ V + S D I I D Sbjct: 1080 AVSGTCTQTLEGH-----GDSVWSVAFSPDGQRVASGSI-DGTIKIWDAASGTCTQT--- 1130 Query: 228 XXXXXXIRLHKDGVTAVALAPGYGSSLASGSIDHSVKFYSFPDGT 362 + H V +VA +P G +ASGSID ++K + GT Sbjct: 1131 ------LEGHGGWVHSVAFSPD-GQRVASGSIDGTIKIWDAASGT 1168 Score = 31.6 bits (70), Expect = 0.50 Identities = 26/82 (31%), Positives = 35/82 (42%) Frame = +3 Query: 117 SVAWFPGGQHVVTASAADVAILIHDXXXXXXXXXXXXXXXXXXIRLHKDGVTAVALAPGY 296 SVA+ P GQ V + S D I I D + H V +V +P Sbjct: 1014 SVAFSPDGQRVASGSD-DKTIKIWDTASGTCTQT---------LEGHGGWVQSVVFSPD- 1062 Query: 297 GSSLASGSIDHSVKFYSFPDGT 362 G +ASGS DH++K + GT Sbjct: 1063 GQRVASGSDDHTIKIWDAVSGT 1084 Score = 29.3 bits (64), Expect = 2.5 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = +3 Query: 255 HKDGVTAVALAPGYGSSLASGSIDHSVKFYSFPDGT 362 H V +VA +P G +ASGS DH++K + GT Sbjct: 924 HGGRVQSVAFSPD-GQRVASGSDDHTIKIWDAASGT 958
>Y2800_ANASP (Q8YTC2) Hypothetical WD-repeat protein alr2800| Length = 1258 Score = 31.6 bits (70), Expect = 0.50 Identities = 24/81 (29%), Positives = 36/81 (44%) Frame = +3 Query: 117 SVAWFPGGQHVVTASAADVAILIHDXXXXXXXXXXXXXXXXXXIRLHKDGVTAVALAPGY 296 SVA+ P G+ + +AS D I + D H D V VA +P Sbjct: 731 SVAFHPDGETLASASG-DKTIKLWDIQDGTCLQTLTG---------HTDWVRCVAFSPD- 779 Query: 297 GSSLASGSIDHSVKFYSFPDG 359 G++LAS + DH++K + G Sbjct: 780 GNTLASSAADHTIKLWDVSQG 800 Score = 27.7 bits (60), Expect = 7.2 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = +3 Query: 255 HKDGVTAVALAPGYGSSLASGSIDHSVKFYSFPDGT 362 H+ V +VA P G +LAS S D ++K + DGT Sbjct: 725 HEHEVFSVAFHPD-GETLASASGDKTIKLWDIQDGT 759
>Y2124_ANASP (Q8YV57) Hypothetical WD-repeat protein all2124| Length = 1683 Score = 31.6 bits (70), Expect = 0.50 Identities = 13/31 (41%), Positives = 24/31 (77%) Frame = +3 Query: 255 HKDGVTAVALAPGYGSSLASGSIDHSVKFYS 347 HKDGV +++++ G ++ASGS+D ++K +S Sbjct: 1071 HKDGVISISISRD-GQTIASGSLDKTIKLWS 1100 Score = 31.2 bits (69), Expect = 0.65 Identities = 14/36 (38%), Positives = 23/36 (63%) Frame = +3 Query: 255 HKDGVTAVALAPGYGSSLASGSIDHSVKFYSFPDGT 362 H+D V +V+ +P G ++ASG D ++K + DGT Sbjct: 1112 HEDAVYSVSFSPD-GQTIASGGSDKTIKLWQTSDGT 1146
>PWP1_MOUSE (Q99LL5) Periodic tryptophan protein 1 homolog| Length = 501 Score = 30.4 bits (67), Expect = 1.1 Identities = 25/108 (23%), Positives = 42/108 (38%) Frame = +3 Query: 33 LSRGIAMKGRAVKLREAHKAGSGSPAFCSVAWFPGGQHVVTASAADVAILIHDXXXXXXX 212 LS+ KG+ E H + A ++W ++V+ +++AD +++ D Sbjct: 237 LSKKKKKKGKKSSSAEGH-----TDAVLDLSWNKTVRNVLASASADSTVVLWDLSVGKSV 291 Query: 213 XXXXXXXXXXXIRLHKDGVTAVALAPGYGSSLASGSIDHSVKFYSFPD 356 + H D V + P +L SGS D SV Y D Sbjct: 292 AR---------LTAHTDKVQTLQFHPFEAQTLISGSYDKSVALYDCRD 330
>DDB2_HUMAN (Q92466) DNA damage-binding protein 2 (Damage-specific DNA-binding| protein 2) (DDB p48 subunit) (DDBb) (UV-damaged DNA-binding protein 2) (UV-DDB 2) Length = 427 Score = 30.0 bits (66), Expect = 1.4 Identities = 15/33 (45%), Positives = 21/33 (63%) Frame = +3 Query: 246 IRLHKDGVTAVALAPGYGSSLASGSIDHSVKFY 344 +R+HK VT VAL P LA+ S+D +VK + Sbjct: 238 LRMHKKKVTHVALNPCCDWFLATASVDQTVKIW 270
>HAT2_ASPOR (Q2UA71) Histone acetyltransferase type B subunit 2 (EC 2.3.1.48)| Length = 436 Score = 30.0 bits (66), Expect = 1.4 Identities = 22/88 (25%), Positives = 36/88 (40%) Frame = +3 Query: 81 AHKAGSGSPAFCSVAWFPGGQHVVTASAADVAILIHDXXXXXXXXXXXXXXXXXXIRLHK 260 A G A ++A+ P + V+ +AD +I + D + H Sbjct: 279 ASAEGQHRDAINAIAFNPAAETVLATGSADKSIGLWDLRNLKTKLHT--------LECHT 330 Query: 261 DGVTAVALAPGYGSSLASGSIDHSVKFY 344 D VT+++ P S LAS S D + F+ Sbjct: 331 DSVTSLSWHPFEESVLASASYDRKIMFW 358
>PWP1_HUMAN (Q13610) Periodic tryptophan protein 1 homolog (Keratinocyte| protein IEF SSP 9502) Length = 501 Score = 29.3 bits (64), Expect = 2.5 Identities = 24/104 (23%), Positives = 42/104 (40%) Frame = +3 Query: 33 LSRGIAMKGRAVKLREAHKAGSGSPAFCSVAWFPGGQHVVTASAADVAILIHDXXXXXXX 212 LS+ KG+ E H + A ++W ++V+ +++AD +++ D Sbjct: 238 LSKKKKKKGKKSSSAEGH-----TDAVLDLSWNKLIRNVLASASADNTVILWDMSLGKPA 292 Query: 213 XXXXXXXXXXXIRLHKDGVTAVALAPGYGSSLASGSIDHSVKFY 344 + +H D V + P +L SGS D SV Y Sbjct: 293 AS---------LAVHTDKVQTLQFHPFEAQTLISGSYDKSVALY 327
>HAT2_ASPFU (Q4WEI5) Histone acetyltransferase type B subunit 2 (EC 2.3.1.48)| Length = 436 Score = 28.9 bits (63), Expect = 3.2 Identities = 21/88 (23%), Positives = 35/88 (39%) Frame = +3 Query: 81 AHKAGSGSPAFCSVAWFPGGQHVVTASAADVAILIHDXXXXXXXXXXXXXXXXXXIRLHK 260 A G A ++A+ P + V+ +AD I + D + H Sbjct: 279 ASTEGQHRDAINAIAFNPAAETVLATGSADKTIGLWDLRNLKTKLHS--------LESHT 330 Query: 261 DGVTAVALAPGYGSSLASGSIDHSVKFY 344 D VT+++ P + LAS S D + F+ Sbjct: 331 DSVTSISWHPFEEAVLASASYDRKIAFW 358
>DDB2_MOUSE (Q99J79) DNA damage-binding protein 2 (Damage-specific DNA-binding| protein 2) Length = 432 Score = 28.5 bits (62), Expect = 4.2 Identities = 15/33 (45%), Positives = 20/33 (60%) Frame = +3 Query: 246 IRLHKDGVTAVALAPGYGSSLASGSIDHSVKFY 344 +R+HK V VAL P LA+ SID +VK + Sbjct: 238 LRMHKKKVAHVALNPCCDWLLATASIDQTVKIW 270
>TAF5_DROME (P49846) Transcription initiation factor TFIID subunit 5| (Transcription initiation factor TFIID 85 kDa subunit) (p85) (TAFII-80) Length = 704 Score = 28.5 bits (62), Expect = 4.2 Identities = 13/36 (36%), Positives = 23/36 (63%) Frame = +3 Query: 255 HKDGVTAVALAPGYGSSLASGSIDHSVKFYSFPDGT 362 HK V+++A + G LASGS+DH++ + +G+ Sbjct: 575 HKGSVSSLAFS-ACGRYLASGSVDHNIIIWDLSNGS 609
>TIPD_DICDI (O15736) Protein tipD| Length = 612 Score = 28.5 bits (62), Expect = 4.2 Identities = 11/18 (61%), Positives = 15/18 (83%) Frame = +3 Query: 291 GYGSSLASGSIDHSVKFY 344 G G+ LASG +DHSV+F+ Sbjct: 459 GSGTHLASGHVDHSVRFW 476
>LGT_MYCPA (P60972) Prolipoprotein diacylglyceryl transferase (EC 2.4.99.-)| Length = 427 Score = 28.1 bits (61), Expect = 5.5 Identities = 13/33 (39%), Positives = 19/33 (57%) Frame = -1 Query: 133 GNQATEQKAGEPEPALCASRSLTARPFMAMPRE 35 GNQ E++ EPEPA A+ + A +A P + Sbjct: 287 GNQYVEEEPAEPEPATVAATTEAATEGVAAPAD 319
>PF20_CHLRE (P93107) Flagellar WD-repeat protein PF20| Length = 606 Score = 27.7 bits (60), Expect = 7.2 Identities = 13/35 (37%), Positives = 20/35 (57%) Frame = +3 Query: 255 HKDGVTAVALAPGYGSSLASGSIDHSVKFYSFPDG 359 HK + +V G +ASGS+DH+V+ + P G Sbjct: 409 HKQAIWSVRFHH-LGEVVASGSLDHTVRLWDLPAG 442
>NR6A1_HUMAN (Q15406) Orphan nuclear receptor NR6A1 (Germ cell nuclear factor)| (GCNF) (Retinoid receptor-related testis-specific receptor) (RTR) Length = 480 Score = 27.7 bits (60), Expect = 7.2 Identities = 13/30 (43%), Positives = 17/30 (56%) Frame = -1 Query: 136 PGNQATEQKAGEPEPALCASRSLTARPFMA 47 PGN+A+E P L +SRS+ FMA Sbjct: 180 PGNRASESNQPSPGSTLSSSRSVELNGFMA 209
>DEOC1_PROAC (Q6A8F1) Deoxyribose-phosphate aldolase 1 (EC 4.1.2.4)| (Phosphodeoxyriboaldolase 1) (Deoxyriboaldolase 1) (DERA 1) Length = 217 Score = 27.7 bits (60), Expect = 7.2 Identities = 12/37 (32%), Positives = 18/37 (48%) Frame = +3 Query: 81 AHKAGSGSPAFCSVAWFPGGQHVVTASAADVAILIHD 191 A + +P CSV FP G H+ AA+ ++D Sbjct: 47 ADELAGHAPRVCSVIGFPSGAHLSEIRAAETKAAVND 83
>NR6A1_MOUSE (Q64249) Orphan nuclear receptor NR6A1 (Germ cell nuclear factor)| (GCNF) (Retinoid receptor-related testis-specific receptor) (RTR) Length = 495 Score = 27.7 bits (60), Expect = 7.2 Identities = 13/30 (43%), Positives = 17/30 (56%) Frame = -1 Query: 136 PGNQATEQKAGEPEPALCASRSLTARPFMA 47 PGN+A+E P L +SRS+ FMA Sbjct: 195 PGNRASESNQPSPGSTLSSSRSVELNGFMA 224
>K0323_HUMAN (O15037) Protein KIAA0323| Length = 678 Score = 27.3 bits (59), Expect = 9.4 Identities = 14/32 (43%), Positives = 18/32 (56%) Frame = +3 Query: 6 TKKSSDAKHLSRGIAMKGRAVKLREAHKAGSG 101 T+ SS A+H SRG A G+ + RE K G Sbjct: 597 TQGSSKAQHPSRGFAEHGKQQQGREEEKGSGG 628
>TUP1_CANAL (P56093) Transcriptional repressor TUP1| Length = 514 Score = 27.3 bits (59), Expect = 9.4 Identities = 13/30 (43%), Positives = 20/30 (66%) Frame = +3 Query: 255 HKDGVTAVALAPGYGSSLASGSIDHSVKFY 344 H+D V +VA + G +ASGS+D +VK + Sbjct: 388 HEDSVYSVAFSNN-GEQIASGSLDRTVKLW 416
>PWP1_YEAST (P21304) Periodic tryptophan protein 1| Length = 576 Score = 27.3 bits (59), Expect = 9.4 Identities = 14/35 (40%), Positives = 19/35 (54%) Frame = +3 Query: 255 HKDGVTAVALAPGYGSSLASGSIDHSVKFYSFPDG 359 H D V ++A + S LAS S DH+VK + G Sbjct: 285 HTDAVLSMAHNKYFRSVLASTSADHTVKLWDLNSG 319
>AAAS_MOUSE (P58742) Aladin (Adracalin)| Length = 546 Score = 27.3 bits (59), Expect = 9.4 Identities = 12/31 (38%), Positives = 17/31 (54%) Frame = +3 Query: 99 GSPAFCSVAWFPGGQHVVTASAADVAILIHD 191 G S+AW P G +++AS D IL+ D Sbjct: 243 GHTPVTSLAWAPNGGWLLSASPVDAVILVWD 273
>AAAS_HUMAN (Q9NRG9) Aladin (Adracalin)| Length = 546 Score = 27.3 bits (59), Expect = 9.4 Identities = 12/31 (38%), Positives = 17/31 (54%) Frame = +3 Query: 99 GSPAFCSVAWFPGGQHVVTASAADVAILIHD 191 G S+AW P G +++AS D AI + D Sbjct: 243 GHTPVTSLAWAPSGGRLLSASPVDAAIRVWD 273 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 33,478,636 Number of Sequences: 219361 Number of extensions: 443418 Number of successful extensions: 1648 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 1591 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1645 length of database: 80,573,946 effective HSP length: 96 effective length of database: 59,515,290 effective search space used: 1428366960 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
