Clone Name | bastl18a12 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK099930.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013118L18, full insert sequence Length = 3398 Score = 93.7 bits (47), Expect = 4e-16 Identities = 98/115 (85%) Strand = Plus / Minus Query: 241 ccacgatccggctccacaaggacggcgtgacggccgtcgccctcgcgccgggctacggca 300 ||||||||||||| |||||||| ||||| ||||| ||||| |||||||||||| |||| Sbjct: 2290 ccacgatccggcttcacaaggatggcgtcacggcgctcgccgtcgcgccgggctccggcg 2231 Query: 301 gctcgctcgcgtccggttccatcgaccactcggtcaagttctactccttcccaga 355 ||||| |||||||| |||||||| ||||| |||||||||| || |||||||| Sbjct: 2230 cgtcgctggcgtccggctccatcgatcactccgtcaagttctgttctttcccaga 2176 Score = 69.9 bits (35), Expect = 5e-09 Identities = 50/55 (90%) Strand = Plus / Minus Query: 141 cagcacgtcgtcaccgcgtccgccgccgacgtcgccatcctgatccacgacgccg 195 ||||| ||||||||||| |||||||||||||| |||||||| ||||| ||||||| Sbjct: 2402 cagcatgtcgtcaccgcatccgccgccgacgtggccatcctcatccatgacgccg 2348 Score = 60.0 bits (30), Expect = 5e-06 Identities = 45/50 (90%) Strand = Plus / Minus Query: 49 ccatgaaaggccgcgcggttaagcttcgggaggcgcacaaggcgggctcg 98 |||||||||| |||||||| ||||| || |||||||||||||| |||||| Sbjct: 2488 ccatgaaagggcgcgcggtgaagctccgagaggcgcacaaggccggctcg 2439
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 91.7 bits (46), Expect = 1e-15 Identities = 88/102 (86%) Strand = Plus / Plus Query: 241 ccacgatccggctccacaaggacggcgtgacggccgtcgccctcgcgccgggctacggca 300 ||||||||||||| |||||||| ||||| ||||| ||||| |||||||||||| |||| Sbjct: 3065840 ccacgatccggcttcacaaggatggcgtcacggcgctcgccgtcgcgccgggctccggcg 3065899 Query: 301 gctcgctcgcgtccggttccatcgaccactcggtcaagttct 342 ||||| |||||||| |||||||| ||||| |||||||||| Sbjct: 3065900 cgtcgctggcgtccggctccatcgatcactccgtcaagttct 3065941 Score = 69.9 bits (35), Expect = 5e-09 Identities = 50/55 (90%) Strand = Plus / Plus Query: 141 cagcacgtcgtcaccgcgtccgccgccgacgtcgccatcctgatccacgacgccg 195 ||||| ||||||||||| |||||||||||||| |||||||| ||||| ||||||| Sbjct: 3065728 cagcatgtcgtcaccgcatccgccgccgacgtggccatcctcatccatgacgccg 3065782 Score = 60.0 bits (30), Expect = 5e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 49 ccatgaaaggccgcgcggttaagcttcgggaggcgcacaaggcgggctcg 98 |||||||||| |||||||| ||||| || |||||||||||||| |||||| Sbjct: 3065642 ccatgaaagggcgcgcggtgaagctccgagaggcgcacaaggccggctcg 3065691
>dbj|AP005560.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1178_D01 Length = 121768 Score = 91.7 bits (46), Expect = 1e-15 Identities = 88/102 (86%) Strand = Plus / Plus Query: 241 ccacgatccggctccacaaggacggcgtgacggccgtcgccctcgcgccgggctacggca 300 ||||||||||||| |||||||| ||||| ||||| ||||| |||||||||||| |||| Sbjct: 85806 ccacgatccggcttcacaaggatggcgtcacggcgctcgccgtcgcgccgggctccggcg 85865 Query: 301 gctcgctcgcgtccggttccatcgaccactcggtcaagttct 342 ||||| |||||||| |||||||| ||||| |||||||||| Sbjct: 85866 cgtcgctggcgtccggctccatcgatcactccgtcaagttct 85907 Score = 69.9 bits (35), Expect = 5e-09 Identities = 50/55 (90%) Strand = Plus / Plus Query: 141 cagcacgtcgtcaccgcgtccgccgccgacgtcgccatcctgatccacgacgccg 195 ||||| ||||||||||| |||||||||||||| |||||||| ||||| ||||||| Sbjct: 85694 cagcatgtcgtcaccgcatccgccgccgacgtggccatcctcatccatgacgccg 85748 Score = 60.0 bits (30), Expect = 5e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 49 ccatgaaaggccgcgcggttaagcttcgggaggcgcacaaggcgggctcg 98 |||||||||| |||||||| ||||| || |||||||||||||| |||||| Sbjct: 85608 ccatgaaagggcgcgcggtgaagctccgagaggcgcacaaggccggctcg 85657
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 63.9 bits (32), Expect = 3e-07 Identities = 47/52 (90%) Strand = Plus / Plus Query: 303 tcgctcgcgtccggttccatcgaccactcggtcaagttctactccttcccag 354 ||||| |||||||| |||||||||||||| ||||||||||| || ||||||| Sbjct: 694560 tcgctagcgtccggctccatcgaccactccgtcaagttctattctttcccag 694611 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 159 tccgccgccgacgtcgccat 178 |||||||||||||||||||| Sbjct: 24153109 tccgccgccgacgtcgccat 24153090
>gb|AC093921.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0041A22, complete sequence Length = 117919 Score = 63.9 bits (32), Expect = 3e-07 Identities = 47/52 (90%) Strand = Plus / Plus Query: 303 tcgctcgcgtccggttccatcgaccactcggtcaagttctactccttcccag 354 ||||| |||||||| |||||||||||||| ||||||||||| || ||||||| Sbjct: 39759 tcgctagcgtccggctccatcgaccactccgtcaagttctattctttcccag 39810
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 48.1 bits (24), Expect = 0.020 Identities = 27/28 (96%) Strand = Plus / Minus Query: 255 cacaaggacggcgtgacggccgtcgccc 282 |||||||||||||||||||||| ||||| Sbjct: 1667384 cacaaggacggcgtgacggccgacgccc 1667357
>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome Length = 3730232 Score = 46.1 bits (23), Expect = 0.078 Identities = 23/23 (100%) Strand = Plus / Minus Query: 180 ctgatccacgacgccgtcgcggg 202 ||||||||||||||||||||||| Sbjct: 184556 ctgatccacgacgccgtcgcggg 184534
>ref|XM_359978.1| Magnaporthe grisea 70-15 hypothetical protein (MG05353.4) partial mRNA Length = 1587 Score = 46.1 bits (23), Expect = 0.078 Identities = 29/31 (93%) Strand = Plus / Plus Query: 146 cgtcgtcaccgcgtccgccgccgacgtcgcc 176 |||||||||| ||||||||||||||| |||| Sbjct: 993 cgtcgtcacctcgtccgccgccgacgacgcc 1023
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 46.1 bits (23), Expect = 0.078 Identities = 23/23 (100%) Strand = Plus / Plus Query: 154 ccgcgtccgccgccgacgtcgcc 176 ||||||||||||||||||||||| Sbjct: 3002477 ccgcgtccgccgccgacgtcgcc 3002499 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 157 cgtccgccgccgacgtcgcca 177 ||||||||||||||||||||| Sbjct: 4873585 cgtccgccgccgacgtcgcca 4873605
>gb|AC112160.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1579_G03, complete sequence Length = 121466 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 159 tccgccgccgacgtcgccat 178 |||||||||||||||||||| Sbjct: 39347 tccgccgccgacgtcgccat 39328
>gb|AC136787.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0052B22, complete sequence Length = 156725 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 ccgccgccgacgtcgccatc 179 |||||||||||||||||||| Sbjct: 101834 ccgccgccgacgtcgccatc 101853
>gb|AY258009.2| Streptomyces clavuligerus clavulanic acid biosynthetic gene cluster, partial sequence Length = 13901 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 149 cgtcaccgcgtccgccgccg 168 |||||||||||||||||||| Sbjct: 6647 cgtcaccgcgtccgccgccg 6666
>emb|BX572607.1| Rhodopseudomonas palustris CGA009 complete genome; segment 15/16 Length = 345012 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 154 ccgcgtccgccgccgacgtcgcca 177 ||||| |||||||||||||||||| Sbjct: 173940 ccgcggccgccgccgacgtcgcca 173963
>emb|AL939120.1|SCO939120 Streptomyces coelicolor A3(2) complete genome; segment 17/29 Length = 248550 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 233 ggccgtcgccacgatccggc 252 |||||||||||||||||||| Sbjct: 90760 ggccgtcgccacgatccggc 90779
>gb|AY034175.1| Streptomyces clavuligerus clavulanic acid gene cluster, partial sequence Length = 12162 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 149 cgtcaccgcgtccgccgccg 168 |||||||||||||||||||| Sbjct: 8154 cgtcaccgcgtccgccgccg 8173
>dbj|AB125331.1| Dicologlossa cuneata mitochondrial cytb gene for cytochrome b, complete cds Length = 1141 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 164 cgccgacgtcgccatcctga 183 |||||||||||||||||||| Sbjct: 987 cgccgacgtcgccatcctga 1006
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 257 caaggacggcgtgacggccg 276 |||||||||||||||||||| Sbjct: 110729 caaggacggcgtgacggccg 110748
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 158 gtccgccgccgacgtcgcca 177 |||||||||||||||||||| Sbjct: 2558529 gtccgccgccgacgtcgcca 2558510
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 154 ccgcgtccgccgccgacgtcgcca 177 ||||| |||||||||||||||||| Sbjct: 1228379 ccgcgaccgccgccgacgtcgcca 1228356
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 158 gtccgccgccgacgtcgcca 177 |||||||||||||||||||| Sbjct: 4041971 gtccgccgccgacgtcgcca 4041952
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 ccgccgccgacgtcgccatc 179 |||||||||||||||||||| Sbjct: 16786272 ccgccgccgacgtcgccatc 16786291
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 ccgccgccgacgtcgccatc 179 |||||||||||||||||||| Sbjct: 5117204 ccgccgccgacgtcgccatc 5117223
>dbj|AP003946.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OJ1147_D11 Length = 138444 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 ccgccgccgacgtcgccatc 179 |||||||||||||||||||| Sbjct: 76242 ccgccgccgacgtcgccatc 76261
>dbj|AP006056.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:B1172G12 Length = 171974 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 ccgccgccgacgtcgccatc 179 |||||||||||||||||||| Sbjct: 159318 ccgccgccgacgtcgccatc 159337
>dbj|AK109163.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-155-G10, full insert sequence Length = 769 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 ccgccgccgacgtcgccatc 179 |||||||||||||||||||| Sbjct: 223 ccgccgccgacgtcgccatc 242
>dbj|AK068341.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013149K10, full insert sequence Length = 2132 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 ccgccgccgacgtcgccatc 179 |||||||||||||||||||| Sbjct: 38 ccgccgccgacgtcgccatc 57
>gb|AY105796.1| Zea mays PCO081368 mRNA sequence Length = 544 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 81 gcgcacaaggcgggctcgggctcc 104 ||||||||||||| |||||||||| Sbjct: 86 gcgcacaaggcggcctcgggctcc 109
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 ccgccgccgacgtcgccatc 179 |||||||||||||||||||| Sbjct: 16880042 ccgccgccgacgtcgccatc 16880061
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 158 gtccgccgccgacgtcgcca 177 |||||||||||||||||||| Sbjct: 4041958 gtccgccgccgacgtcgcca 4041939
>emb|AL731882.2|CNS08C8M Oryza sativa chromosome 12, . BAC OSJNBb0028H07 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 132682 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 158 gtccgccgccgacgtcgcca 177 |||||||||||||||||||| Sbjct: 78392 gtccgccgccgacgtcgcca 78373 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,760,385 Number of Sequences: 3902068 Number of extensions: 1760385 Number of successful extensions: 42134 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 31 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 41018 Number of HSP's gapped (non-prelim): 1116 length of query: 364 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 342 effective length of database: 17,147,199,772 effective search space: 5864342322024 effective search space used: 5864342322024 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)