ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl18a12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK099930.1| Oryza sativa (japonica cultivar-group) cDNA clon... 94 4e-16
2dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 92 1e-15
3dbj|AP005560.3| Oryza sativa (japonica cultivar-group) genomic D... 92 1e-15
4dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 64 3e-07
5gb|AC093921.2| Oryza sativa (japonica cultivar-group) chromosome... 64 3e-07
6dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 48 0.020
7gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome 46 0.078
8ref|XM_359978.1| Magnaporthe grisea 70-15 hypothetical protein (... 46 0.078
9gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 46 0.078
10gb|AC112160.3| Oryza sativa (japonica cultivar-group) chromosome... 40 4.8
11gb|AC136787.4| Oryza sativa (japonica cultivar-group) chromosome... 40 4.8
12gb|AY258009.2| Streptomyces clavuligerus clavulanic acid biosynt... 40 4.8
13emb|BX572607.1| Rhodopseudomonas palustris CGA009 complete genom... 40 4.8
14emb|AL939120.1|SCO939120 Streptomyces coelicolor A3(2) complete ... 40 4.8
15gb|AY034175.1| Streptomyces clavuligerus clavulanic acid gene cl... 40 4.8
16dbj|AB125331.1| Dicologlossa cuneata mitochondrial cytb gene for... 40 4.8
17gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, comple... 40 4.8
18gb|CP000249.1| Frankia sp. CcI3, complete genome 40 4.8
19gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 40 4.8
20dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.8
21dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.8
22dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.8
23dbj|AP003946.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.8
24dbj|AP006056.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.8
25dbj|AK109163.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.8
26dbj|AK068341.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.8
27gb|AY105796.1| Zea mays PCO081368 mRNA sequence 40 4.8
28gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 4.8
29gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 4.8
30emb|AL731882.2|CNS08C8M Oryza sativa chromosome 12, . BAC OSJNBb... 40 4.8

>dbj|AK099930.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013118L18, full
            insert sequence
          Length = 3398

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 98/115 (85%)
 Strand = Plus / Minus

                                                                        
Query: 241  ccacgatccggctccacaaggacggcgtgacggccgtcgccctcgcgccgggctacggca 300
            ||||||||||||| |||||||| ||||| |||||  ||||| |||||||||||| |||| 
Sbjct: 2290 ccacgatccggcttcacaaggatggcgtcacggcgctcgccgtcgcgccgggctccggcg 2231

                                                                   
Query: 301  gctcgctcgcgtccggttccatcgaccactcggtcaagttctactccttcccaga 355
              ||||| |||||||| |||||||| ||||| ||||||||||  || ||||||||
Sbjct: 2230 cgtcgctggcgtccggctccatcgatcactccgtcaagttctgttctttcccaga 2176



 Score = 69.9 bits (35), Expect = 5e-09
 Identities = 50/55 (90%)
 Strand = Plus / Minus

                                                                   
Query: 141  cagcacgtcgtcaccgcgtccgccgccgacgtcgccatcctgatccacgacgccg 195
            ||||| ||||||||||| |||||||||||||| |||||||| ||||| |||||||
Sbjct: 2402 cagcatgtcgtcaccgcatccgccgccgacgtggccatcctcatccatgacgccg 2348



 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                              
Query: 49   ccatgaaaggccgcgcggttaagcttcgggaggcgcacaaggcgggctcg 98
            |||||||||| |||||||| ||||| || |||||||||||||| ||||||
Sbjct: 2488 ccatgaaagggcgcgcggtgaagctccgagaggcgcacaaggccggctcg 2439



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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 88/102 (86%)
 Strand = Plus / Plus

                                                                           
Query: 241     ccacgatccggctccacaaggacggcgtgacggccgtcgccctcgcgccgggctacggca 300
               ||||||||||||| |||||||| ||||| |||||  ||||| |||||||||||| |||| 
Sbjct: 3065840 ccacgatccggcttcacaaggatggcgtcacggcgctcgccgtcgcgccgggctccggcg 3065899

                                                         
Query: 301     gctcgctcgcgtccggttccatcgaccactcggtcaagttct 342
                 ||||| |||||||| |||||||| ||||| ||||||||||
Sbjct: 3065900 cgtcgctggcgtccggctccatcgatcactccgtcaagttct 3065941



 Score = 69.9 bits (35), Expect = 5e-09
 Identities = 50/55 (90%)
 Strand = Plus / Plus

                                                                      
Query: 141     cagcacgtcgtcaccgcgtccgccgccgacgtcgccatcctgatccacgacgccg 195
               ||||| ||||||||||| |||||||||||||| |||||||| ||||| |||||||
Sbjct: 3065728 cagcatgtcgtcaccgcatccgccgccgacgtggccatcctcatccatgacgccg 3065782



 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 45/50 (90%)
 Strand = Plus / Plus

                                                                 
Query: 49      ccatgaaaggccgcgcggttaagcttcgggaggcgcacaaggcgggctcg 98
               |||||||||| |||||||| ||||| || |||||||||||||| ||||||
Sbjct: 3065642 ccatgaaagggcgcgcggtgaagctccgagaggcgcacaaggccggctcg 3065691



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>dbj|AP005560.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1178_D01
          Length = 121768

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 88/102 (86%)
 Strand = Plus / Plus

                                                                         
Query: 241   ccacgatccggctccacaaggacggcgtgacggccgtcgccctcgcgccgggctacggca 300
             ||||||||||||| |||||||| ||||| |||||  ||||| |||||||||||| |||| 
Sbjct: 85806 ccacgatccggcttcacaaggatggcgtcacggcgctcgccgtcgcgccgggctccggcg 85865

                                                       
Query: 301   gctcgctcgcgtccggttccatcgaccactcggtcaagttct 342
               ||||| |||||||| |||||||| ||||| ||||||||||
Sbjct: 85866 cgtcgctggcgtccggctccatcgatcactccgtcaagttct 85907



 Score = 69.9 bits (35), Expect = 5e-09
 Identities = 50/55 (90%)
 Strand = Plus / Plus

                                                                    
Query: 141   cagcacgtcgtcaccgcgtccgccgccgacgtcgccatcctgatccacgacgccg 195
             ||||| ||||||||||| |||||||||||||| |||||||| ||||| |||||||
Sbjct: 85694 cagcatgtcgtcaccgcatccgccgccgacgtggccatcctcatccatgacgccg 85748



 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 45/50 (90%)
 Strand = Plus / Plus

                                                               
Query: 49    ccatgaaaggccgcgcggttaagcttcgggaggcgcacaaggcgggctcg 98
             |||||||||| |||||||| ||||| || |||||||||||||| ||||||
Sbjct: 85608 ccatgaaagggcgcgcggtgaagctccgagaggcgcacaaggccggctcg 85657



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5,
              complete sequence
          Length = 29737217

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 47/52 (90%)
 Strand = Plus / Plus

                                                                  
Query: 303    tcgctcgcgtccggttccatcgaccactcggtcaagttctactccttcccag 354
              ||||| |||||||| |||||||||||||| ||||||||||| || |||||||
Sbjct: 694560 tcgctagcgtccggctccatcgaccactccgtcaagttctattctttcccag 694611



 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 159      tccgccgccgacgtcgccat 178
                ||||||||||||||||||||
Sbjct: 24153109 tccgccgccgacgtcgccat 24153090



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>gb|AC093921.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0041A22, complete sequence
          Length = 117919

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 47/52 (90%)
 Strand = Plus / Plus

                                                                 
Query: 303   tcgctcgcgtccggttccatcgaccactcggtcaagttctactccttcccag 354
             ||||| |||||||| |||||||||||||| ||||||||||| || |||||||
Sbjct: 39759 tcgctagcgtccggctccatcgaccactccgtcaagttctattctttcccag 39810



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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 48.1 bits (24), Expect = 0.020
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                           
Query: 255     cacaaggacggcgtgacggccgtcgccc 282
               |||||||||||||||||||||| |||||
Sbjct: 1667384 cacaaggacggcgtgacggccgacgccc 1667357



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>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome
          Length = 3730232

 Score = 46.1 bits (23), Expect = 0.078
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 180    ctgatccacgacgccgtcgcggg 202
              |||||||||||||||||||||||
Sbjct: 184556 ctgatccacgacgccgtcgcggg 184534



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>ref|XM_359978.1| Magnaporthe grisea 70-15 hypothetical protein (MG05353.4) partial
            mRNA
          Length = 1587

 Score = 46.1 bits (23), Expect = 0.078
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                           
Query: 146  cgtcgtcaccgcgtccgccgccgacgtcgcc 176
            |||||||||| ||||||||||||||| ||||
Sbjct: 993  cgtcgtcacctcgtccgccgccgacgacgcc 1023



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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 46.1 bits (23), Expect = 0.078
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 154     ccgcgtccgccgccgacgtcgcc 176
               |||||||||||||||||||||||
Sbjct: 3002477 ccgcgtccgccgccgacgtcgcc 3002499



 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 157     cgtccgccgccgacgtcgcca 177
               |||||||||||||||||||||
Sbjct: 4873585 cgtccgccgccgacgtcgcca 4873605



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>gb|AC112160.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1579_G03,
             complete sequence
          Length = 121466

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 159   tccgccgccgacgtcgccat 178
             ||||||||||||||||||||
Sbjct: 39347 tccgccgccgacgtcgccat 39328



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>gb|AC136787.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0052B22,
              complete sequence
          Length = 156725

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 160    ccgccgccgacgtcgccatc 179
              ||||||||||||||||||||
Sbjct: 101834 ccgccgccgacgtcgccatc 101853



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>gb|AY258009.2| Streptomyces clavuligerus clavulanic acid biosynthetic gene cluster,
            partial sequence
          Length = 13901

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 149  cgtcaccgcgtccgccgccg 168
            ||||||||||||||||||||
Sbjct: 6647 cgtcaccgcgtccgccgccg 6666



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>emb|BX572607.1| Rhodopseudomonas palustris CGA009 complete genome; segment 15/16
          Length = 345012

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 154    ccgcgtccgccgccgacgtcgcca 177
              ||||| ||||||||||||||||||
Sbjct: 173940 ccgcggccgccgccgacgtcgcca 173963



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>emb|AL939120.1|SCO939120 Streptomyces coelicolor A3(2) complete genome; segment 17/29
          Length = 248550

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 233   ggccgtcgccacgatccggc 252
             ||||||||||||||||||||
Sbjct: 90760 ggccgtcgccacgatccggc 90779



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>gb|AY034175.1| Streptomyces clavuligerus clavulanic acid gene cluster, partial
            sequence
          Length = 12162

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 149  cgtcaccgcgtccgccgccg 168
            ||||||||||||||||||||
Sbjct: 8154 cgtcaccgcgtccgccgccg 8173



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>dbj|AB125331.1| Dicologlossa cuneata mitochondrial cytb gene for cytochrome b,
            complete cds
          Length = 1141

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 164  cgccgacgtcgccatcctga 183
            ||||||||||||||||||||
Sbjct: 987  cgccgacgtcgccatcctga 1006



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>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome
          Length = 3561584

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 257    caaggacggcgtgacggccg 276
              ||||||||||||||||||||
Sbjct: 110729 caaggacggcgtgacggccg 110748



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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 158     gtccgccgccgacgtcgcca 177
               ||||||||||||||||||||
Sbjct: 2558529 gtccgccgccgacgtcgcca 2558510



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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 154     ccgcgtccgccgccgacgtcgcca 177
               ||||| ||||||||||||||||||
Sbjct: 1228379 ccgcgaccgccgccgacgtcgcca 1228356



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 158     gtccgccgccgacgtcgcca 177
               ||||||||||||||||||||
Sbjct: 4041971 gtccgccgccgacgtcgcca 4041952



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 160      ccgccgccgacgtcgccatc 179
                ||||||||||||||||||||
Sbjct: 16786272 ccgccgccgacgtcgccatc 16786291



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 160     ccgccgccgacgtcgccatc 179
               ||||||||||||||||||||
Sbjct: 5117204 ccgccgccgacgtcgccatc 5117223



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>dbj|AP003946.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OJ1147_D11
          Length = 138444

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 160   ccgccgccgacgtcgccatc 179
             ||||||||||||||||||||
Sbjct: 76242 ccgccgccgacgtcgccatc 76261



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>dbj|AP006056.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:B1172G12
          Length = 171974

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 160    ccgccgccgacgtcgccatc 179
              ||||||||||||||||||||
Sbjct: 159318 ccgccgccgacgtcgccatc 159337



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>dbj|AK109163.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-155-G10, full
           insert sequence
          Length = 769

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 160 ccgccgccgacgtcgccatc 179
           ||||||||||||||||||||
Sbjct: 223 ccgccgccgacgtcgccatc 242



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>dbj|AK068341.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013149K10, full
           insert sequence
          Length = 2132

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 160 ccgccgccgacgtcgccatc 179
           ||||||||||||||||||||
Sbjct: 38  ccgccgccgacgtcgccatc 57



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>gb|AY105796.1| Zea mays PCO081368 mRNA sequence
          Length = 544

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 81  gcgcacaaggcgggctcgggctcc 104
           ||||||||||||| ||||||||||
Sbjct: 86  gcgcacaaggcggcctcgggctcc 109



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 160      ccgccgccgacgtcgccatc 179
                ||||||||||||||||||||
Sbjct: 16880042 ccgccgccgacgtcgccatc 16880061



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 158     gtccgccgccgacgtcgcca 177
               ||||||||||||||||||||
Sbjct: 4041958 gtccgccgccgacgtcgcca 4041939



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>emb|AL731882.2|CNS08C8M Oryza sativa chromosome 12, . BAC OSJNBb0028H07 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 132682

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 158   gtccgccgccgacgtcgcca 177
             ||||||||||||||||||||
Sbjct: 78392 gtccgccgccgacgtcgcca 78373


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,760,385
Number of Sequences: 3902068
Number of extensions: 1760385
Number of successful extensions: 42134
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 41018
Number of HSP's gapped (non-prelim): 1116
length of query: 364
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 342
effective length of database: 17,147,199,772
effective search space: 5864342322024
effective search space used: 5864342322024
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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