ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl18a07 |
|---|---|
| Clone Library Name | barley_pub |
>SND1_BOVIN (Q863B3) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) Length = 910 Score = 61.6 bits (148), Expect = 4e-10 Identities = 35/84 (41%), Positives = 46/84 (54%), Gaps = 9/84 (10%) Frame = +2 Query: 173 RGKVKAATSGDCLLIMGSTKAEIPPEKSITLSYPMAPRLARRGGV---------DEPFAW 325 RG VK SG +++ G + PPE+ I LS A LARR V DEP+A+ Sbjct: 21 RGIVKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLARRAAVAQPDAKDTPDEPWAF 80 Query: 326 DSREFLRKLCVGKEVTFRVDYTAP 397 +REFLRK +GKEV F ++ P Sbjct: 81 PAREFLRKKLIGKEVCFTIENKTP 104 Score = 37.0 bits (84), Expect = 0.011 Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 10/83 (12%) Frame = +2 Query: 179 KVKAATSGDCLLIMGSTKAEIPPEKSITLSYPMAPRLARRGGVDE----------PFAWD 328 KV + D +++ K K+I LS PRL D+ P+ ++ Sbjct: 346 KVMQVLNADAIVV----KLNSGDYKTIHLSSIRPPRLEGENTQDKNKKLRPLYDIPYMFE 401 Query: 329 SREFLRKLCVGKEVTFRVDYTAP 397 +REFLRK +GK+V VDY P Sbjct: 402 AREFLRKKLIGKKVNVTVDYIRP 424
>SND1_MOUSE (Q78PY7) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) Length = 910 Score = 61.2 bits (147), Expect = 6e-10 Identities = 39/103 (37%), Positives = 53/103 (51%), Gaps = 15/103 (14%) Frame = +2 Query: 134 AIMASNTGASGW------LRGKVKAATSGDCLLIMGSTKAEIPPEKSITLSYPMAPRLAR 295 A A ++G+SG RG VK SG +++ G + PPE+ I LS A LAR Sbjct: 2 ASSAQSSGSSGGPAVPTVQRGIVKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLAR 61 Query: 296 RGGV---------DEPFAWDSREFLRKLCVGKEVTFRVDYTAP 397 R DEP+A+ +REFLRK +GKEV F ++ P Sbjct: 62 RAAATQPDGKDTPDEPWAFPAREFLRKKLIGKEVCFTIENKTP 104 Score = 36.2 bits (82), Expect = 0.019 Identities = 15/30 (50%), Positives = 21/30 (70%) Frame = +2 Query: 308 DEPFAWDSREFLRKLCVGKEVTFRVDYTAP 397 D P+ +++REFLRK +GK+V VDY P Sbjct: 395 DIPYMFEAREFLRKKLIGKKVNVTVDYIRP 424
>SND1_RAT (Q66X93) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) (SND p102) (p105 coactivator) Length = 909 Score = 60.8 bits (146), Expect = 7e-10 Identities = 38/100 (38%), Positives = 52/100 (52%), Gaps = 15/100 (15%) Frame = +2 Query: 143 ASNTGASGW------LRGKVKAATSGDCLLIMGSTKAEIPPEKSITLSYPMAPRLARRGG 304 A ++G+SG RG VK SG +++ G + PPE+ I LS A LARR Sbjct: 4 AQSSGSSGGPAVPTVQRGIVKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLARRAA 63 Query: 305 V---------DEPFAWDSREFLRKLCVGKEVTFRVDYTAP 397 DEP+A+ +REFLRK +GKEV F ++ P Sbjct: 64 ATQPDGKDTPDEPWAFPAREFLRKKLIGKEVCFTIENKTP 103 Score = 36.6 bits (83), Expect = 0.015 Identities = 15/30 (50%), Positives = 22/30 (73%) Frame = +2 Query: 308 DEPFAWDSREFLRKLCVGKEVTFRVDYTAP 397 D P+ +++REFLRK +GK+V+ VDY P Sbjct: 394 DIPYMFEAREFLRKKLIGKKVSVTVDYIRP 423
>SND1_BRARE (Q7ZT42) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) (4SNc-Tudor domain protein) Length = 897 Score = 60.1 bits (144), Expect = 1e-09 Identities = 36/96 (37%), Positives = 49/96 (51%), Gaps = 9/96 (9%) Frame = +2 Query: 137 IMASNTGASGWLRGKVKAATSGDCLLIMGSTKAEIPPEKSITLSYPMAPRLARRG----- 301 + +S A RG VK SG +++ G + PPE+ I LS A LARR Sbjct: 9 VQSSQASAPQLQRGIVKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGALARRAIQGQP 68 Query: 302 ----GVDEPFAWDSREFLRKLCVGKEVTFRVDYTAP 397 DEP+A+ +REF+RK +GKEV F V+ P Sbjct: 69 DTKDTPDEPWAFQAREFMRKKVIGKEVCFTVENKTP 104 Score = 34.3 bits (77), Expect = 0.072 Identities = 14/27 (51%), Positives = 20/27 (74%) Frame = +2 Query: 308 DEPFAWDSREFLRKLCVGKEVTFRVDY 388 D P+ +++REFLRK +GK+V VDY Sbjct: 397 DIPYMFEAREFLRKKLIGKKVNVTVDY 423
>SND1_HUMAN (Q7KZF4) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) (EBNA2 coactivator p100) Length = 910 Score = 59.7 bits (143), Expect = 2e-09 Identities = 33/84 (39%), Positives = 45/84 (53%), Gaps = 9/84 (10%) Frame = +2 Query: 173 RGKVKAATSGDCLLIMGSTKAEIPPEKSITLSYPMAPRLARRGGV---------DEPFAW 325 RG +K SG +++ G + PPE+ I LS A LARR DEP+A+ Sbjct: 21 RGIIKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLARRAAATQPDAKDTPDEPWAF 80 Query: 326 DSREFLRKLCVGKEVTFRVDYTAP 397 +REFLRK +GKEV F ++ P Sbjct: 81 PAREFLRKKLIGKEVCFTIENKTP 104 Score = 37.0 bits (84), Expect = 0.011 Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 10/83 (12%) Frame = +2 Query: 179 KVKAATSGDCLLIMGSTKAEIPPEKSITLSYPMAPRLARRGGVDE----------PFAWD 328 KV + D +++ K K+I LS PRL D+ P+ ++ Sbjct: 346 KVMQVLNADAIVV----KLNSGDYKTIHLSSIRPPRLEGENTQDKNKKLRPLYDIPYMFE 401 Query: 329 SREFLRKLCVGKEVTFRVDYTAP 397 +REFLRK +GK+V VDY P Sbjct: 402 AREFLRKKLIGKKVNVTVDYIRP 424
>HISX_BRAJA (P59397) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)| Length = 431 Score = 30.4 bits (67), Expect = 1.0 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 4/65 (6%) Frame = +2 Query: 110 LAAGQSQGAIMASNTGASGWLRGKVKAA----TSGDCLLIMGSTKAEIPPEKSITLSYPM 277 + AG S+ ++A +TG + W+ + A TS +LI S + EK++ Sbjct: 232 MIAGPSEVLVIADDTGNADWIAADLLAQAEHDTSAQSILITDSARLAADVEKAVEAQLKT 291 Query: 278 APRLA 292 PR A Sbjct: 292 LPRTA 296
>HCN4_RABIT (Q9TV66) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 4 (Hyperpolarization-activated cation channel 4) (HAC-4) Length = 1175 Score = 30.0 bits (66), Expect = 1.4 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%) Frame = +2 Query: 113 AAG--QSQGAIMASNTGASGWLRGKVKAATSGDCLLIMGS 226 AAG +S+GA + G RG K++T+GDC GS Sbjct: 66 AAGGAESRGAALGGAADGEGPARGAAKSSTNGDCRRFRGS 105
>PER2_RAT (Q9Z301) Period circadian protein 2 (rPER2)| Length = 1257 Score = 28.1 bits (61), Expect = 5.2 Identities = 22/71 (30%), Positives = 33/71 (46%) Frame = -1 Query: 243 GISALVLPMMRRQSPEVAAFTLPLSHPEAPVFDAMIAPWDWPAASGLRLPIRDPGEGVWP 64 G + V+PM + PE A LP + P APV M+ + +P A+ P + +P Sbjct: 869 GFTMPVVPMGTQ--PEFAVQPLPFAAPLAPVMAFMLPSYPFPPATPNLPQAFFPSQPHFP 926 Query: 63 AG*SLLSRPDP 31 A +L S P Sbjct: 927 AHPTLASEITP 937
>COBQ_MYCTU (P0A532) Cobyric acid synthase| Length = 494 Score = 27.7 bits (60), Expect = 6.8 Identities = 16/50 (32%), Positives = 21/50 (42%) Frame = +1 Query: 151 HRSFRMAKGQGEGCDFWGLPSHHGEHQGRDPAREVHHSVIPYGPKAGSSW 300 H+ R+ +G+G G G HHG D A E GP G+ W Sbjct: 375 HKVLRLPRGEGLGVPASGYEIHHGRITRGDTAEEFLGGARD-GPVFGTMW 423
>COBQ_MYCBO (P0A533) Cobyric acid synthase| Length = 494 Score = 27.7 bits (60), Expect = 6.8 Identities = 16/50 (32%), Positives = 21/50 (42%) Frame = +1 Query: 151 HRSFRMAKGQGEGCDFWGLPSHHGEHQGRDPAREVHHSVIPYGPKAGSSW 300 H+ R+ +G+G G G HHG D A E GP G+ W Sbjct: 375 HKVLRLPRGEGLGVPASGYEIHHGRITRGDTAEEFLGGARD-GPVFGTMW 423
>PER2_MOUSE (O54943) Period circadian protein 2 (mPER2)| Length = 1257 Score = 27.7 bits (60), Expect = 6.8 Identities = 22/71 (30%), Positives = 33/71 (46%) Frame = -1 Query: 243 GISALVLPMMRRQSPEVAAFTLPLSHPEAPVFDAMIAPWDWPAASGLRLPIRDPGEGVWP 64 G + V+PM + PE A LP + P APV M+ + +P A+ P + +P Sbjct: 869 GFTMPVVPMGTQ--PEFAVQPLPFAAPLAPVMAFMLPSYPFPPATPNLPQAFLPSQPHFP 926 Query: 63 AG*SLLSRPDP 31 A +L S P Sbjct: 927 AHPTLASEITP 937
>MYCB2_MOUSE (Q7TPH6) Probable ubiquitin ligase protein MYCBP2 (EC 6.3.2.-) (Myc| binding protein 2) (Protein associated with Myc) (Pam/highwire/rpm-1 protein) Length = 4711 Score = 27.7 bits (60), Expect = 6.8 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%) Frame = -1 Query: 111 SGLRLPIRDPGEGVWPAG*SLLS-RPDPDPN 22 +GL + ++DP +G+ P G L+ + DP PN Sbjct: 2393 AGLEVKVKDPPKGMIPPGTQLVKPKADPQPN 2423
>RIBD2_BUCAI (P57534) 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC| 1.1.1.193) (HTP reductase) Length = 207 Score = 27.7 bits (60), Expect = 6.8 Identities = 15/48 (31%), Positives = 25/48 (52%) Frame = -3 Query: 388 VIHSECDLLSYAKFPQKLPAIPSKWLIDSTTTSQPWGHRV*QSDGLLW 245 V + E D + + FP K+ P + +IDS QP H + ++ G +W Sbjct: 44 VRYKELDKKTLSIFPNKIFQHPIRVIIDSKNRVQP-SHNIIKTKGKIW 90
>LPRF_MYCTU (P65314) Putative lipoprotein lprF precursor| Length = 261 Score = 27.7 bits (60), Expect = 6.8 Identities = 13/22 (59%), Positives = 16/22 (72%) Frame = -1 Query: 339 NSLLSQANGSSTPPRRASLGAI 274 N L+SQA GS P R +SLGA+ Sbjct: 2 NGLISQACGSHRPRRPSSLGAV 23
>LPRF_MYCBO (P65315) Putative lipoprotein lprF precursor| Length = 261 Score = 27.7 bits (60), Expect = 6.8 Identities = 13/22 (59%), Positives = 16/22 (72%) Frame = -1 Query: 339 NSLLSQANGSSTPPRRASLGAI 274 N L+SQA GS P R +SLGA+ Sbjct: 2 NGLISQACGSHRPRRPSSLGAV 23
>AMYI_SACDI (P29760) Glucoamylase S2 precursor (EC 3.2.1.3) (Glucan| 1,4-alpha-glucosidase) (1,4-alpha-D-glucan glucohydrolase) (GAII) Length = 768 Score = 27.3 bits (59), Expect = 8.8 Identities = 11/30 (36%), Positives = 18/30 (60%) Frame = -3 Query: 319 KWLIDSTTTSQPWGHRV*QSDGLLWRDLCL 230 KW +D+T ++PWG Q+DG R + + Sbjct: 444 KWNVDNTAFTEPWGRP--QNDGPALRSIAI 471
>RHG26_HUMAN (Q9UNA1) Rho-GTPase-activating protein 26 (Oligophrenin-1-like| protein) (GTPase regulator associated with focal adhesion kinase) Length = 814 Score = 27.3 bits (59), Expect = 8.8 Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 1/93 (1%) Frame = -1 Query: 342 RNSLLSQANGS-STPPRRASLGAIGYDRVMDFSGGISALVLPMMRRQSPEVAAFTLPLSH 166 RNS+++ + S S+ P + M+ S A+V P P + T PLS Sbjct: 616 RNSIINSSLESVSSNPNSILNSSSSLQPNMNSSDPDLAVVKPTRPNSLPPNPSPTSPLS- 674 Query: 165 PEAPVFDAMIAPWDWPAASGLRLPIRDPGEGVW 67 P P+F A +P + S P+R VW Sbjct: 675 PSWPMFSAPSSPMPTSSTSSDSSPVRSVAGFVW 707
>PFA5_YARLI (Q6C7D1) Palmitoyltransferase PFA5 (EC 2.3.1.-) (Protein fatty| acyltransferase 5) Length = 334 Score = 27.3 bits (59), Expect = 8.8 Identities = 13/27 (48%), Positives = 14/27 (51%) Frame = +1 Query: 190 CDFWGLPSHHGEHQGRDPAREVHHSVI 270 CD WG+P E Q P R HHS I Sbjct: 113 CDGWGMPKWCSECQTHKPDR-THHSAI 138
>AMYH_SACDI (P04065) Glucoamylase S1 precursor (EC 3.2.1.3) (Glucan| 1,4-alpha-glucosidase) (1,4-alpha-D-glucan glucohydrolase) (GAI) Length = 767 Score = 27.3 bits (59), Expect = 8.8 Identities = 11/30 (36%), Positives = 18/30 (60%) Frame = -3 Query: 319 KWLIDSTTTSQPWGHRV*QSDGLLWRDLCL 230 KW +D+T ++PWG Q+DG R + + Sbjct: 443 KWNVDNTAFTEPWGRP--QNDGPALRSIAI 470 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,326,079 Number of Sequences: 219361 Number of extensions: 1207563 Number of successful extensions: 3473 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 3394 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3467 length of database: 80,573,946 effective HSP length: 112 effective length of database: 56,005,514 effective search space used: 1344132336 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
