ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl18a06 |
|---|---|
| Clone Library Name | barley_pub |
>gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, complete cds Length = 2910 Score = 684 bits (345), Expect = 0.0 Identities = 391/401 (97%), Gaps = 4/401 (0%) Strand = Plus / Plus Query: 1 tcacacagcagcaccacagcgagctaacttagcaagcgtgccacactccccagagatcga 60 |||||||||| |||| |||||||||||||||| ||||||||||||||||| ||||||||| Sbjct: 2 tcacacagca-caccgcagcgagctaacttag-aagcgtgccacactccc-agagatcga 58 Query: 61 gcgaagatgtttggcgtcggcggcatcgtgagcgacctgacggggggcctccggggcgcc 120 || |||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||| Sbjct: 59 gc-aagatgcttggcgtcggcggcatcgtgagcgacttgacggggggcatccggggcgcc 117 Query: 121 cacctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 118 cacctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggc 177 Query: 181 gccaccgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagctcatc 240 ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 178 gcccacgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagctcatc 237 Query: 241 agctccaccaacgtcgaccacaacaacggtgggcgcgggaaggtgggcgcggaggcgaac 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 238 agctccaccaacgtcgaccacaacaacggtgggcgcgggaaggtgggcgcggaggcgaac 297 Query: 301 ctggagcagtggctcctgccgacgaacctgccgttcatcaccaccggcgagaacaagttc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 298 ctggagcagtggctcctgccgacgaacctgccgttcatcaccaccggcgagaacaagttc 357 Query: 361 gccgtcaccttcgactggtcggtggacaagctgggggtgcc 401 ||||||||||||||||||||||||||||||||||||||||| Sbjct: 358 gccgtcaccttcgactggtcggtggacaagctgggggtgcc 398
>ref|XM_469655.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2613 Score = 202 bits (102), Expect = 6e-49 Identities = 174/198 (87%) Strand = Plus / Plus Query: 117 cgcccacctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgactt 176 ||||| ||||||||||||| |||||||||||||||||||||| |||||| |||||||||| Sbjct: 42 cgcccgcctcaagggctccctcgtcctcatgcgcaagaacgccctcgacatcaacgactt 101 Query: 177 cggcgccaccgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagct 236 ||||||||||||||| |||||| || ||||| |||||||||||||||||||||||||||| Sbjct: 102 cggcgccaccgtcatcgacggcatctccgagttcctcggccgcggcgtcacctgccagct 161 Query: 237 catcagctccaccaacgtcgaccacaacaacggtgggcgcgggaaggtgggcgcggaggc 296 | |||||||| || |||||||| |||||| || | |||| |||||| ||||||| Sbjct: 162 cgtcagctcctccctcgtcgaccccaacaatgggaacagggggagggtggggacggaggc 221 Query: 297 gaacctggagcagtggct 314 || ||||||||||||||| Sbjct: 222 gagcctggagcagtggct 239
>dbj|AK073529.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046E17, full insert sequence Length = 2928 Score = 202 bits (102), Expect = 6e-49 Identities = 174/198 (87%) Strand = Plus / Plus Query: 117 cgcccacctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgactt 176 ||||| ||||||||||||| |||||||||||||||||||||| |||||| |||||||||| Sbjct: 157 cgcccgcctcaagggctccctcgtcctcatgcgcaagaacgccctcgacatcaacgactt 216 Query: 177 cggcgccaccgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagct 236 ||||||||||||||| |||||| || ||||| |||||||||||||||||||||||||||| Sbjct: 217 cggcgccaccgtcatcgacggcatctccgagttcctcggccgcggcgtcacctgccagct 276 Query: 237 catcagctccaccaacgtcgaccacaacaacggtgggcgcgggaaggtgggcgcggaggc 296 | |||||||| || |||||||| |||||| || | |||| |||||| ||||||| Sbjct: 277 cgtcagctcctccctcgtcgaccccaacaatgggaacagggggagggtggggacggaggc 336 Query: 297 gaacctggagcagtggct 314 || ||||||||||||||| Sbjct: 337 gagcctggagcagtggct 354
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 188 bits (95), Expect = 1e-44 Identities = 131/143 (91%) Strand = Plus / Plus Query: 117 cgcccacctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgactt 176 ||||| ||||||||||||| |||||||||||||||||||||| |||||| |||||||||| Sbjct: 30023301 cgcccgcctcaagggctccctcgtcctcatgcgcaagaacgccctcgacatcaacgactt 30023360 Query: 177 cggcgccaccgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagct 236 ||||||||||||||| |||||| || ||||| |||||||||||||||||||||||||||| Sbjct: 30023361 cggcgccaccgtcatcgacggcatctccgagttcctcggccgcggcgtcacctgccagct 30023420 Query: 237 catcagctccaccaacgtcgacc 259 | |||||||| || |||||||| Sbjct: 30023421 cgtcagctcctccctcgtcgacc 30023443 Score = 135 bits (68), Expect = 1e-28 Identities = 119/136 (87%) Strand = Plus / Plus Query: 124 ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 183 ||||||||| | || || |||||||||||||||| |||||| ||||||||||||||||| Sbjct: 27798757 ctcaagggcacggtggtgctcatgcgcaagaacgtcctcgacctcaacgacttcggcgcc 27798816 Query: 184 accgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagctcatcagc 243 |||||||| |||||| || |||| |||||||| |||||||||||||||||||||||| Sbjct: 27798817 accgtcatcgacggcctcggcgagttcctcggcaagggcgtcacctgccagctcatcagc 27798876 Query: 244 tccaccaacgtcgacc 259 |||||| |||||||| Sbjct: 27798877 tccaccgccgtcgacc 27798892 Score = 60.0 bits (30), Expect = 6e-06 Identities = 36/38 (94%) Strand = Plus / Plus Query: 277 gggaaggtgggcgcggaggcgaacctggagcagtggct 314 ||||||||||| |||||||||| ||||||||||||||| Sbjct: 27799308 gggaaggtgggggcggaggcgagcctggagcagtggct 27799345 Score = 44.1 bits (22), Expect = 0.35 Identities = 34/38 (89%) Strand = Plus / Plus Query: 277 gggaaggtgggcgcggaggcgaacctggagcagtggct 314 |||| |||||| ||||||||| ||||||||||||||| Sbjct: 30023539 gggagggtggggacggaggcgagcctggagcagtggct 30023576 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 73 ggcgtcggcggcatcgtgag 92 |||||||||||||||||||| Sbjct: 24817033 ggcgtcggcggcatcgtgag 24817052
>gb|AC117988.3| Oryza sativa chromosome 3 BAC OSJNBa0057G07 genomic sequence, complete sequence Length = 155106 Score = 188 bits (95), Expect = 1e-44 Identities = 131/143 (91%) Strand = Plus / Minus Query: 117 cgcccacctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgactt 176 ||||| ||||||||||||| |||||||||||||||||||||| |||||| |||||||||| Sbjct: 84450 cgcccgcctcaagggctccctcgtcctcatgcgcaagaacgccctcgacatcaacgactt 84391 Query: 177 cggcgccaccgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagct 236 ||||||||||||||| |||||| || ||||| |||||||||||||||||||||||||||| Sbjct: 84390 cggcgccaccgtcatcgacggcatctccgagttcctcggccgcggcgtcacctgccagct 84331 Query: 237 catcagctccaccaacgtcgacc 259 | |||||||| || |||||||| Sbjct: 84330 cgtcagctcctccctcgtcgacc 84308 Score = 44.1 bits (22), Expect = 0.35 Identities = 34/38 (89%) Strand = Plus / Minus Query: 277 gggaaggtgggcgcggaggcgaacctggagcagtggct 314 |||| |||||| ||||||||| ||||||||||||||| Sbjct: 84212 gggagggtggggacggaggcgagcctggagcagtggct 84175
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 188 bits (95), Expect = 1e-44 Identities = 131/143 (91%) Strand = Plus / Plus Query: 117 cgcccacctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgactt 176 ||||| ||||||||||||| |||||||||||||||||||||| |||||| |||||||||| Sbjct: 30114723 cgcccgcctcaagggctccctcgtcctcatgcgcaagaacgccctcgacatcaacgactt 30114782 Query: 177 cggcgccaccgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagct 236 ||||||||||||||| |||||| || ||||| |||||||||||||||||||||||||||| Sbjct: 30114783 cggcgccaccgtcatcgacggcatctccgagttcctcggccgcggcgtcacctgccagct 30114842 Query: 237 catcagctccaccaacgtcgacc 259 | |||||||| || |||||||| Sbjct: 30114843 cgtcagctcctccctcgtcgacc 30114865 Score = 135 bits (68), Expect = 1e-28 Identities = 119/136 (87%) Strand = Plus / Plus Query: 124 ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 183 ||||||||| | || || |||||||||||||||| |||||| ||||||||||||||||| Sbjct: 27890081 ctcaagggcacggtggtgctcatgcgcaagaacgtcctcgacctcaacgacttcggcgcc 27890140 Query: 184 accgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagctcatcagc 243 |||||||| |||||| || |||| |||||||| |||||||||||||||||||||||| Sbjct: 27890141 accgtcatcgacggcctcggcgagttcctcggcaagggcgtcacctgccagctcatcagc 27890200 Query: 244 tccaccaacgtcgacc 259 |||||| |||||||| Sbjct: 27890201 tccaccgccgtcgacc 27890216 Score = 60.0 bits (30), Expect = 6e-06 Identities = 36/38 (94%) Strand = Plus / Plus Query: 277 gggaaggtgggcgcggaggcgaacctggagcagtggct 314 ||||||||||| |||||||||| ||||||||||||||| Sbjct: 27890632 gggaaggtgggggcggaggcgagcctggagcagtggct 27890669 Score = 44.1 bits (22), Expect = 0.35 Identities = 34/38 (89%) Strand = Plus / Plus Query: 277 gggaaggtgggcgcggaggcgaacctggagcagtggct 314 |||| |||||| ||||||||| ||||||||||||||| Sbjct: 30114961 gggagggtggggacggaggcgagcctggagcagtggct 30114998 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 73 ggcgtcggcggcatcgtgag 92 |||||||||||||||||||| Sbjct: 24908356 ggcgtcggcggcatcgtgag 24908375
>emb|X64396.1|OSLRNA O.sativa mRNA for lipoxygenase L-2 Length = 2830 Score = 186 bits (94), Expect = 4e-44 Identities = 172/198 (86%) Strand = Plus / Plus Query: 117 cgcccacctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgactt 176 ||||| ||||||||||||| |||||||||||||||||||||| |||||| |||||||||| Sbjct: 139 cgcccgcctcaagggctccctcgtcctcatgcgcaagaacgccctcgacatcaacgactt 198 Query: 177 cggcgccaccgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagct 236 ||||||||||||||| || || || ||||| |||||||||||||||||||||||||||| Sbjct: 199 cggcgccaccgtcatcgagcgcatctccgagttcctcggccgcggcgtcacctgccagct 258 Query: 237 catcagctccaccaacgtcgaccacaacaacggtgggcgcgggaaggtgggcgcggaggc 296 | |||||||| || |||||||| |||||| || | |||| |||||| ||||||| Sbjct: 259 cgtcagctcctccctcgtcgaccccaacaatgggaacagggggagggtggggacggaggc 318 Query: 297 gaacctggagcagtggct 314 || ||||||||||||||| Sbjct: 319 gagcctggagcagtggct 336
>gb|L35931.1|BLYLOXA Barley lipoxygenase 1 (LoxA) gene, complete cds Length = 2818 Score = 176 bits (89), Expect = 4e-41 Identities = 164/189 (86%) Strand = Plus / Plus Query: 124 ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 183 ||||||||| | || || |||||||||||||||| ||| ||| ||||||||||||||||| Sbjct: 123 ctcaagggcacggtggtgctcatgcgcaagaacgtgctggacctcaacgacttcggcgcc 182 Query: 184 accgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagctcatcagc 243 ||| |||| |||||| || |||| |||||||| ||||||||||||||||| |||||| Sbjct: 183 accatcatcgacggcatcggcgagttcctcggcaagggcgtcacctgccagcttatcagc 242 Query: 244 tccaccaacgtcgaccacaacaacggtgggcgcgggaaggtgggcgcggaggcgaacctg 303 |||||| ||||||||| ||||||| || |||||||||||||||||||||||| | ||| Sbjct: 243 tccaccgccgtcgaccaagacaacggcggtcgcgggaaggtgggcgcggaggcggagctg 302 Query: 304 gagcagtgg 312 ||||||||| Sbjct: 303 gagcagtgg 311 Score = 52.0 bits (26), Expect = 0.001 Identities = 47/54 (87%) Strand = Plus / Plus Query: 354 caagttcgccgtcaccttcgactggtcggtggacaagctgggggtgcctggcgc 407 |||||||| | |||||||||||||| |||||| ||||| |||||||| ||||| Sbjct: 347 caagttcggcctcaccttcgactgggaggtggagaagctcggggtgccgggcgc 400
>ref|XM_469409.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2601 Score = 172 bits (87), Expect = 6e-40 Identities = 165/191 (86%) Strand = Plus / Plus Query: 124 ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 183 ||||||||| | || || |||||||||||||||| |||||| ||||||||||||||||| Sbjct: 52 ctcaagggcacggtggtgctcatgcgcaagaacgtcctcgacctcaacgacttcggcgcc 111 Query: 184 accgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagctcatcagc 243 |||||||| |||||| || |||| |||||||| |||||||||||||||||||||||| Sbjct: 112 accgtcatcgacggcctcggcgagttcctcggcaagggcgtcacctgccagctcatcagc 171 Query: 244 tccaccaacgtcgaccacaacaacggtgggcgcgggaaggtgggcgcggaggcgaacctg 303 |||||| |||||||| |||||||| || ||||||||||| |||||||||| |||| Sbjct: 172 tccaccgccgtcgacccaaacaacggcaaccgggggaaggtgggggcggaggcgagcctg 231 Query: 304 gagcagtggct 314 ||||||||||| Sbjct: 232 gagcagtggct 242
>gb|AF329371.1|AF329371 Zea mays lipoxygenase mRNA, complete cds Length = 2595 Score = 165 bits (83), Expect = 1e-37 Identities = 229/278 (82%), Gaps = 6/278 (2%) Strand = Plus / Plus Query: 124 ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 183 ||||||||| | || || |||||||||||||||| ||| ||| ||||||||||||||||| Sbjct: 52 ctcaagggcacggtggtgctcatgcgcaagaacgtgctggacctcaacgacttcggcgcc 111 Query: 184 accgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagctcatcagc 243 |||||| | ||| || ||| |||| |||||||| || ||||||||||||||||||||| Sbjct: 112 accgtcgttgacagcatcagcgagttcctcggcaagggggtcacctgccagctcatcagc 171 Query: 244 tccaccaacgtcgaccacaacaacggtgggcgcgggaaggtgggcgcggaggcgaacctg 303 |||||| ||||||| ||||||||| |||||| ||| || ||||||||||||||| Sbjct: 172 tccaccctcgtcgacgccaacaacggcaaccgcgggcgggtcggggcggaggcgaacctg 231 Query: 304 gagcagtggctcctgccgacgaacctgccgttcatcaccaccggcgagaacaagttcgcc 363 ||||||||||| ||||| |||||||| | || ||||||||| |||||||| | Sbjct: 232 gagcagtggct------gacgagcctgccgtcgctgacgaccggcgagtccaagttcggc 285 Query: 364 gtcaccttcgactggtcggtggacaagctgggggtgcc 401 ||||| ||||||||| |||||| |||||||| ||||| Sbjct: 286 gtcacgttcgactgggaggtggagaagctgggagtgcc 323
>gb|AF457968.1| Zea mays clone cho1c.pk002.j23, mRNA sequence Length = 515 Score = 165 bits (83), Expect = 1e-37 Identities = 229/278 (82%), Gaps = 6/278 (2%) Strand = Plus / Plus Query: 124 ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 183 ||||||||| | || || |||||||||||||||| ||| ||| ||||||||||||||||| Sbjct: 114 ctcaagggcacggtggtgctcatgcgcaagaacgtgctggacctcaacgacttcggcgcc 173 Query: 184 accgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagctcatcagc 243 |||||| | ||| || ||| |||| |||||||| || ||||||||||||||||||||| Sbjct: 174 accgtcgttgacagcatcagcgagttcctcggcaagggggtcacctgccagctcatcagc 233 Query: 244 tccaccaacgtcgaccacaacaacggtgggcgcgggaaggtgggcgcggaggcgaacctg 303 |||||| ||||||| ||||||||| |||||| ||| || ||||||||||||||| Sbjct: 234 tccaccctcgtcgacgccaacaacggcaaccgcgggcgggtcggggcggaggcgaacctg 293 Query: 304 gagcagtggctcctgccgacgaacctgccgttcatcaccaccggcgagaacaagttcgcc 363 ||||||||||| ||||| |||||||| | || ||||||||| |||||||| | Sbjct: 294 gagcagtggct------gacgagcctgccgtcgctgacgaccggcgagtccaagttcggc 347 Query: 364 gtcaccttcgactggtcggtggacaagctgggggtgcc 401 ||||| ||||||||| |||||| |||||||| ||||| Sbjct: 348 gtcacgttcgactgggaggtggagaagctgggagtgcc 385
>gb|AC093017.10| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0024B16 map S2606, complete sequence Length = 124140 Score = 135 bits (68), Expect = 1e-28 Identities = 119/136 (87%) Strand = Plus / Plus Query: 124 ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 183 ||||||||| | || || |||||||||||||||| |||||| ||||||||||||||||| Sbjct: 42887 ctcaagggcacggtggtgctcatgcgcaagaacgtcctcgacctcaacgacttcggcgcc 42946 Query: 184 accgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagctcatcagc 243 |||||||| |||||| || |||| |||||||| |||||||||||||||||||||||| Sbjct: 42947 accgtcatcgacggcctcggcgagttcctcggcaagggcgtcacctgccagctcatcagc 43006 Query: 244 tccaccaacgtcgacc 259 |||||| |||||||| Sbjct: 43007 tccaccgccgtcgacc 43022 Score = 60.0 bits (30), Expect = 6e-06 Identities = 36/38 (94%) Strand = Plus / Plus Query: 277 gggaaggtgggcgcggaggcgaacctggagcagtggct 314 ||||||||||| |||||||||| ||||||||||||||| Sbjct: 43438 gggaaggtgggggcggaggcgagcctggagcagtggct 43475
>gb|AC097368.3| Oryza sativa chromosome 3 BAC OSJNBb0017F17 genomic sequence, complete sequence Length = 119329 Score = 135 bits (68), Expect = 1e-28 Identities = 119/136 (87%) Strand = Plus / Minus Query: 124 ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 183 ||||||||| | || || |||||||||||||||| |||||| ||||||||||||||||| Sbjct: 15136 ctcaagggcacggtggtgctcatgcgcaagaacgtcctcgacctcaacgacttcggcgcc 15077 Query: 184 accgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagctcatcagc 243 |||||||| |||||| || |||| |||||||| |||||||||||||||||||||||| Sbjct: 15076 accgtcatcgacggcctcggcgagttcctcggcaagggcgtcacctgccagctcatcagc 15017 Query: 244 tccaccaacgtcgacc 259 |||||| |||||||| Sbjct: 15016 tccaccgccgtcgacc 15001 Score = 60.0 bits (30), Expect = 6e-06 Identities = 36/38 (94%) Strand = Plus / Minus Query: 277 gggaaggtgggcgcggaggcgaacctggagcagtggct 314 ||||||||||| |||||||||| ||||||||||||||| Sbjct: 14585 gggaaggtgggggcggaggcgagcctggagcagtggct 14548
>gb|AF271894.1|AF271894 Zea mays lipoxygenase (LOX) mRNA, complete cds Length = 2845 Score = 125 bits (63), Expect = 1e-25 Identities = 99/111 (89%) Strand = Plus / Plus Query: 204 cgagctcctcggccgcggcgtcacctgccagctcatcagctccaccaacgtcgaccacaa 263 |||| |||||||||||||||||||||||||||| |||||||||||| |||||||| || Sbjct: 153 cgagttcctcggccgcggcgtcacctgccagcttatcagctccaccgtcgtcgaccctaa 212 Query: 264 caacggtgggcgcgggaaggtgggcgcggaggcgaacctggagcagtggct 314 |||||| ||||||||| ||||||||||||||| ||||||||||||||| Sbjct: 213 caacggcaaccgcgggaagttgggcgcggaggcgagcctggagcagtggct 263 Score = 42.1 bits (21), Expect = 1.4 Identities = 39/45 (86%) Strand = Plus / Plus Query: 347 gcgagaacaagttcgccgtcaccttcgactggtcggtggacaagc 391 |||||||| ||||| |||||||||||||||| |||||| |||| Sbjct: 290 gcgagaaccagttccgcgtcaccttcgactgggaggtggagaagc 334
>gb|AF464895.1| Oryza sativa basmati-370 lipoxygenase (Lox) gene, partial cds Length = 1160 Score = 117 bits (59), Expect = 3e-23 Identities = 89/99 (89%) Strand = Plus / Plus Query: 148 cgcaagaacgcgctcgacttcaacgacttcggcgccaccgtcatggacggcgtcaccgag 207 ||||||||||| |||||| ||||||||||||||||||||||| | | ||||| ||||| Sbjct: 1 cgcaagaacgccctcgacatcaacgacttcggcgccaccgtcctcgggcgcgtctccgag 60 Query: 208 ctcctcggccgcggcgtcacctgccagctcatcagctcc 246 ||||||||||||||||||||||||||||| |||||||| Sbjct: 61 ttcctcggccgcggcgtcacctgccagctcgtcagctcc 99
>gb|AF465643.1| Zea mays B73 lipoxygenase gene, complete cds Length = 5013 Score = 117 bits (59), Expect = 3e-23 Identities = 116/135 (85%) Strand = Plus / Plus Query: 124 ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 183 ||||||||| | || || |||||||||||||||| ||| ||| ||||||||||||||||| Sbjct: 200 ctcaagggcacggtggtgctcatgcgcaagaacgtgctggacctcaacgacttcggcgcc 259 Query: 184 accgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagctcatcagc 243 |||||| | ||| || ||| |||| |||||||| || ||||||||||||||||||||| Sbjct: 260 accgtcgttgacagcatcagcgagttcctcggcaagggggtcacctgccagctcatcagc 319 Query: 244 tccaccaacgtcgac 258 |||||| ||||||| Sbjct: 320 tccaccctcgtcgac 334 Score = 67.9 bits (34), Expect = 2e-08 Identities = 93/113 (82%), Gaps = 6/113 (5%) Strand = Plus / Plus Query: 289 gcggaggcgaacctggagcagtggctcctgccgacgaacctgccgttcatcaccaccggc 348 |||||||||||||||||||||||||| ||||| |||||||| | || |||||| Sbjct: 945 gcggaggcgaacctggagcagtggct------gacgagcctgccgtcgctgacgaccggc 998 Query: 349 gagaacaagttcgccgtcaccttcgactggtcggtggacaagctgggggtgcc 401 ||| |||||||| |||||| ||||||||| |||||| |||||||| ||||| Sbjct: 999 gagtccaagttcggcgtcacgttcgactgggaggtggagaagctgggagtgcc 1051
>gb|U83904.1|HVU83904 Hordeum vulgare lipoxygenase isoenzyme 1 (Lox:Hv1) gene, promoter region and partial cds Length = 5236 Score = 115 bits (58), Expect = 1e-22 Identities = 109/126 (86%) Strand = Plus / Plus Query: 124 ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 183 ||||||||| | || || |||||||||||||||| ||| ||| ||||||||||||||||| Sbjct: 3566 ctcaagggcacggtggtgctcatgcgcaagaacgtgctggacctcaacgacttcggcgcc 3625 Query: 184 accgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagctcatcagc 243 ||| |||| |||||| || |||| |||||||| ||||||||||||||||| |||||| Sbjct: 3626 accatcatcgacggcatcggcgagttcctcggcaagggcgtcacctgccagcttatcagc 3685 Query: 244 tccacc 249 |||||| Sbjct: 3686 tccacc 3691 Score = 67.9 bits (34), Expect = 2e-08 Identities = 46/50 (92%) Strand = Plus / Plus Query: 263 acaacggtgggcgcgggaaggtgggcgcggaggcgaacctggagcagtgg 312 ||||||| || |||||||||||||||||||||||| | |||||||||||| Sbjct: 4255 acaacggcggtcgcgggaaggtgggcgcggaggcggagctggagcagtgg 4304 Score = 52.0 bits (26), Expect = 0.001 Identities = 47/54 (87%) Strand = Plus / Plus Query: 354 caagttcgccgtcaccttcgactggtcggtggacaagctgggggtgcctggcgc 407 |||||||| | |||||||||||||| |||||| ||||| |||||||| ||||| Sbjct: 4340 caagttcggcctcaccttcgactgggaggtggagaagctcggggtgccgggcgc 4393
>gb|AF465642.1| Zea mays Golden cross bantam-70 lipoxygenase gene, promoter region and partial cds Length = 3196 Score = 79.8 bits (40), Expect = 6e-12 Identities = 64/72 (88%) Strand = Plus / Plus Query: 188 tcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagctcatcagctcca 247 ||||||||||| || |||| ||||||||||||||||||||||||| ||| ||||||||| Sbjct: 2387 tcatggacggcctcggcgagttcctcggccgcggcgtcacctgccaactcgtcagctcca 2446 Query: 248 ccaacgtcgacc 259 || |||||||| Sbjct: 2447 ccgtcgtcgacc 2458 Score = 52.0 bits (26), Expect = 0.001 Identities = 41/46 (89%) Strand = Plus / Plus Query: 274 cgcgggaaggtgggcgcggaggcgaacctggagcagtggctcctgc 319 |||||||||||||| |||||||| ||||||||||||||| |||| Sbjct: 2744 cgcgggaaggtgggtcaggaggcgagcctggagcagtggctgctgc 2789 Score = 40.1 bits (20), Expect = 5.4 Identities = 41/48 (85%) Strand = Plus / Plus Query: 344 ccggcgagaacaagttcgccgtcaccttcgactggtcggtggacaagc 391 |||||||| || ||||| |||||||||||||||| |||||| |||| Sbjct: 2808 ccggcgaggaccagttccgcgtcaccttcgactgggaggtggagaagc 2855
>gb|AE005807.1| Caulobacter crescentus CB15 section 133 of 359 of the complete genome Length = 8803 Score = 44.1 bits (22), Expect = 0.35 Identities = 25/26 (96%) Strand = Plus / Plus Query: 156 cgcgctcgacttcaacgacttcggcg 181 ||||| |||||||||||||||||||| Sbjct: 4469 cgcgcacgacttcaacgacttcggcg 4494
>ref|NM_003028.1| Homo sapiens Src homology 2 domain containing adaptor protein B (SHB), mRNA Length = 2306 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 101 cggggggcctccggggcgccc 121 ||||||||||||||||||||| Sbjct: 469 cggggggcctccggggcgccc 449
>gb|AY596511.1| Helicosporidium sp. ex Simulium jonesii gamma-carbonic anhydrase mRNA, partial cds Length = 775 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 177 cggcgccaccgtcatggacggcgtcaccg 205 ||||||||| ||||||||||||| ||||| Sbjct: 400 cggcgccacggtcatggacggcgccaccg 428
>emb|X75342.1|HSSHB H.sapiens SHB mRNA Length = 2306 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 101 cggggggcctccggggcgccc 121 ||||||||||||||||||||| Sbjct: 469 cggggggcctccggggcgccc 449
>gb|AC145811.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0088L13 map near C50029S, complete sequence Length = 129900 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 73 ggcgtcggcggcatcgtgag 92 |||||||||||||||||||| Sbjct: 52268 ggcgtcggcggcatcgtgag 52287
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 360 cgccgtcaccttcgactggtcggtggac 387 ||||| ||||||||| |||||||||||| Sbjct: 3465594 cgccggcaccttcgaatggtcggtggac 3465621
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 312 gctcctgccgacgaacctgc 331 |||||||||||||||||||| Sbjct: 137505 gctcctgccgacgaacctgc 137486
>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome Length = 6397126 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 326 acctgccgttcatcaccaccggcg 349 ||||||||||||||| |||||||| Sbjct: 288875 acctgccgttcatcatcaccggcg 288852
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome Length = 6093698 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 326 acctgccgttcatcaccaccggcg 349 ||||||||||||||| |||||||| Sbjct: 153202 acctgccgttcatcatcaccggcg 153225
>gb|AY316746.1| Rhizobium sp. NGR234 megaplasmid 2 contig 2, complete sequence Length = 236455 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 78 cggcggcatcgtgagcgacctgac 101 ||||||||||| |||||||||||| Sbjct: 205636 cggcggcatcgagagcgacctgac 205659
>emb|AL591790.1|SME591790 Sinorhizobium meliloti 1021 complete chromosome; segment 9/12 Length = 323450 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 78 cggcggcatcgtgagcgacctgac 101 ||||||||||| |||||||||||| Sbjct: 80122 cggcggcatcgagagcgacctgac 80099
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 206 agctcctcggccgcggcgtc 225 |||||||||||||||||||| Sbjct: 1962239 agctcctcggccgcggcgtc 1962220
>gb|AC124918.5| Rattus norvegicus 4 BAC CH230-4H1 (Children's Hospital Oakland Research Institute) complete sequence Length = 228052 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 233 agctcatcagctccaccaac 252 |||||||||||||||||||| Sbjct: 82121 agctcatcagctccaccaac 82102
>ref|XM_967239.1| PREDICTED: Tribolium castaneum similar to CG11980-PC, isoform C (LOC661050), mRNA Length = 1156 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 246 caccaacgtcgaccacaaca 265 |||||||||||||||||||| Sbjct: 239 caccaacgtcgaccacaaca 220
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 330 gccgttcatcaccaccggcg 349 |||||||||||||||||||| Sbjct: 1867059 gccgttcatcaccaccggcg 1867040
>emb|AL731878.4|CNS08C8I Oryza sativa chromosome 3, . BAC OSJNBb0116P11 of library OSJNBb from chromosome 3 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 128559 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 73 ggcgtcggcggcatcgtgag 92 |||||||||||||||||||| Sbjct: 103984 ggcgtcggcggcatcgtgag 104003
>gb|AC079160.5| Homo sapiens BAC clone RP11-176K15 from 4, complete sequence Length = 147727 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 299 acctggagcagtggctcctg 318 |||||||||||||||||||| Sbjct: 78731 acctggagcagtggctcctg 78750
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome Length = 3304561 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 176 tcggcgccaccgtcatggacggcg 199 ||||||||| |||||||||||||| Sbjct: 2990742 tcggcgccatcgtcatggacggcg 2990719
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 73 ggcgtcggcggcatcgtgagcgac 96 |||||||||||||||||| ||||| Sbjct: 5079435 ggcgtcggcggcatcgtgcgcgac 5079412
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 73 ggcgtcggcggcatcgtgagcgac 96 |||||||||||||||||| ||||| Sbjct: 590306 ggcgtcggcggcatcgtgcgcgac 590329 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 146 tgcgcaagaacgcgctcgacttca 169 ||||||||||| |||||||||||| Sbjct: 206796 tgcgcaagaacccgctcgacttca 206773
>dbj|AK109329.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-201-B01, full insert sequence Length = 1556 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 73 ggcgtcggcggcatcgtgag 92 |||||||||||||||||||| Sbjct: 613 ggcgtcggcggcatcgtgag 594
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 40.1 bits (20), Expect = 5.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 192 ggacggcgtcaccgagctcctcggccgcggcg 223 ||||||||| | |||| ||||||||||||||| Sbjct: 1448865 ggacggcgtgatcgagttcctcggccgcggcg 1448834
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 73 ggcgtcggcggcatcgtgagcgac 96 |||||||||||||||||| ||||| Sbjct: 657733 ggcgtcggcggcatcgtgcgcgac 657756 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,337,129 Number of Sequences: 3902068 Number of extensions: 2337129 Number of successful extensions: 51607 Number of sequences better than 10.0: 41 Number of HSP's better than 10.0 without gapping: 45 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 50473 Number of HSP's gapped (non-prelim): 1126 length of query: 407 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 385 effective length of database: 17,147,199,772 effective search space: 6601671912220 effective search space used: 6601671912220 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
