ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl18a05 |
|---|---|
| Clone Library Name | barley_pub |
>SRCH_HUMAN (P23327) Sarcoplasmic reticulum histidine-rich calcium-binding| protein precursor Length = 699 Score = 30.8 bits (68), Expect = 0.81 Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 7/36 (19%) Frame = +3 Query: 132 HHAGHQIPREG-------AGHDRPLHRHGAQHAETG 218 HH H++PRE GH P HR Q ETG Sbjct: 416 HHHHHRVPREEDEEVSAELGHQAPSHRQSHQDEETG 451
>FUT1_MOUSE (O09160) Galactoside 2-alpha-L-fucosyltransferase 1 (EC 2.4.1.69)| (GDP-L-fucose:beta-D-galactoside 2-alpha-L-fucosyltransferase 1) (Alpha(1,2)FT 1) (Fucosyltransferase 1) Length = 376 Score = 29.3 bits (64), Expect = 2.4 Identities = 16/39 (41%), Positives = 20/39 (51%) Frame = +3 Query: 132 HHAGHQIPREGAGHDRPLHRHGAQHAETGPRSSPVAPVH 248 HH QI RE H+ R GAQ+ +G R P +P H Sbjct: 177 HHLREQIRREFTLHNHL--REGAQYLLSGLRIGPASPAH 213
>Y227_BACHD (Q9KG85) UPF0309 protein BH0227| Length = 250 Score = 28.5 bits (62), Expect = 4.0 Identities = 12/24 (50%), Positives = 17/24 (70%) Frame = -2 Query: 195 HVDGADDHAQLLLEEFDVPHDVLA 124 ++DGADDH QLL+E + +LA Sbjct: 221 NIDGADDHNQLLIERYQKRIPLLA 244
>CPXI_BACME (P14762) Cytochrome P450(BM-1) (EC 1.14.14.-)| Length = 410 Score = 28.5 bits (62), Expect = 4.0 Identities = 27/96 (28%), Positives = 42/96 (43%) Frame = +1 Query: 100 LVEKSWNLSKDIMRDIKFLEKELGMIVRSIDMELNTPRQDHGAALLLLSMGDLRELAHGI 279 ++EK NLS DI+ D +I +D E T + A +LLL G + +H I Sbjct: 204 VIEKRSNLSDDIISD---------LIQAEVDGETFTDEEIVHATMLLLGAG-VETTSHAI 253 Query: 280 EDCIDSLMYRASWKQQSSLLRRRVQSPKTLLTGLQF 387 + S +Y S L R +PK + L++ Sbjct: 254 ANMFYSFLYDDK-SLYSELRNNRELAPKAVEEMLRY 288
>POL2_BAYMG (Q01365) Genome polyprotein 2 [Contains: Helper component| proteinase (EC 3.4.22.45) (HC-pro); 70 kDa protein] Length = 890 Score = 28.5 bits (62), Expect = 4.0 Identities = 18/60 (30%), Positives = 33/60 (55%) Frame = +1 Query: 121 LSKDIMRDIKFLEKELGMIVRSIDMELNTPRQDHGAALLLLSMGDLRELAHGIEDCIDSL 300 L + ++RD+ F + + + S+D LN G + L++ G+LRELA I + + +L Sbjct: 534 LPRTVVRDLSFNDDD---DLHSVD--LNEAGSRFGEVVSLIARGNLRELAGAIPESLSNL 588
>APEX2_BOVIN (Q5E9N9) DNA-(apurinic or apyrimidinic site) lyase 2 (EC 4.2.99.18)| (Apurinic-apyrimidinic endonuclease 2) (AP endonuclease 2) Length = 514 Score = 28.1 bits (61), Expect = 5.3 Identities = 17/58 (29%), Positives = 25/58 (43%) Frame = -3 Query: 233 RAAPWSCLGVLSSMSMERTIMPSSFSRNLMSRMMSLLRFQLFSTSEKSLGSIILMEPL 60 R W+ G+ S + R PSS S M R++ L + E + +L EPL Sbjct: 3 RLVSWNINGIRSPLQGVRCEEPSSCSAMAMGRILDKLDADIVCLQETKVTRDVLTEPL 60
>HPS6_RAT (Q7M733) Hermansky-Pudlak syndrome 6 protein homolog (Ruby-eye| protein homolog) (Ruby-eye-like protein) (Ru) Length = 809 Score = 28.1 bits (61), Expect = 5.3 Identities = 19/45 (42%), Positives = 21/45 (46%), Gaps = 1/45 (2%) Frame = -1 Query: 283 PLSREPARADLPWTGATGLLRGPVSAC*APCRW-SGRSCPAPSRG 152 PL+ RA L TGA G GPV + W SG P P RG Sbjct: 733 PLTVGLVRALLEQTGAQGRSSGPVQSTFEDILWDSGTPPPTPPRG 777
>RPM1_ARATH (Q39214) Disease resistance protein RPM1 (Resistance to Pseudomonas| syringae protein 3) Length = 926 Score = 28.1 bits (61), Expect = 5.3 Identities = 26/117 (22%), Positives = 53/117 (45%), Gaps = 5/117 (4%) Frame = +1 Query: 61 SGSIKIMLPKLFSLVEKSWNLSKDIMRDIKFLEKELGMIVRSIDMELNTPRQDHGAA--- 231 S ++ + ++ S++E L + +I ++KEL +I++S +E +G+ Sbjct: 3 SATVDFGIGRILSVLENETLLLSGVHGEIDKMKKEL-LIMKSF-LEDTHKHGGNGSTTTT 60 Query: 232 --LLLLSMGDLRELAHGIEDCIDSLMYRASWKQQSSLLRRRVQSPKTLLTGLQFAQK 396 L + + R+LA+ IED +D Y + + + R P+ + AQK Sbjct: 61 TQLFQTFVANTRDLAYQIEDILDEFGYHIHGYRSCAKIWRAFHFPRYMWARHSIAQK 117
>UBR11_SCHPO (O13731) Ubiquitin-protein ligase E3 component N-recognin-11 (EC| 6.-.-.-) (N-end-recognizing protein 11) Length = 2052 Score = 27.7 bits (60), Expect = 6.9 Identities = 23/105 (21%), Positives = 40/105 (38%), Gaps = 10/105 (9%) Frame = -3 Query: 323 CFQLARYMRLSMQXXXXXXXXXXXPMDRSNRAAPWSCLGVLSSMSMERTIMPSSFSRN-- 150 CF A Y RL +D + P SC+ S + + ++P S SR+ Sbjct: 802 CFTQAPYERLFYAIKCIITSITHPKLDIAESLEPLSCIPSSSLTNFTQPLVPFSVSRDPI 861 Query: 149 --------LMSRMMSLLRFQLFSTSEKSLGSIILMEPLKMAASIS 39 ++S + S R S +K +L PL++ ++ Sbjct: 862 SFYHPLHWMLSNLFSYCRVDASSHWDKDTLLALLDHPLRVCVLLA 906
>KE4L_CAEEL (Q9XTQ7) Hypothetical Ke4-like protein H13N06.5 in chromosome X| Length = 462 Score = 27.7 bits (60), Expect = 6.9 Identities = 11/27 (40%), Positives = 14/27 (51%) Frame = +3 Query: 132 HHAGHQIPREGAGHDRPLHRHGAQHAE 212 HH GH G H+ H HGA+ A+ Sbjct: 109 HHHGHAHDHHGHSHEDHGHSHGAESAK 135
>ZC3H6_MOUSE (Q8BYK8) Zinc finger CCCH-type domain-containing protein 6| Length = 1177 Score = 27.3 bits (59), Expect = 9.0 Identities = 18/68 (26%), Positives = 28/68 (41%) Frame = -2 Query: 270 SQLAQISHGQEQQGCSVVLSRRVELHVDGADDHAQLLLEEFDVPHDVLAQIPTLLNQREE 91 SQL QE G S +L G+ + ++ FDV H L +P + ++E Sbjct: 170 SQLKYYRQSQESSGSSFSKESGKKLRSKGSPPGTEYRIKSFDVSHGHL--LPKKIRRKEH 227 Query: 90 LGQHNLDG 67 G + G Sbjct: 228 CGARVIKG 235
>FUBP2_HUMAN (Q92945) Far upstream element-binding protein 2 (FUSE-binding| protein 2) (KH type splicing regulatory protein) (KSRP) (p75) Length = 707 Score = 27.3 bits (59), Expect = 9.0 Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 4/83 (4%) Frame = +3 Query: 135 HAG----HQIPREGAGHDRPLHRHGAQHAETGPRSSPVAPVHXXXXXXXXXXXXLHRQPH 302 HAG HQ P +G G+ P + A H + ++ P ++QP Sbjct: 531 HAGGPPPHQYPPQGWGNTYPQWQPPAPHDPSKAAAAAADP----NAAWAAYYSHYYQQPP 586 Query: 303 VPRELEAAVFSAPPARAVPQDAP 371 P A +APPA+ P P Sbjct: 587 GPVPGPAPAPAAPPAQGEPPQPP 609
>ASPM_CANFA (P62286) Abnormal spindle-like microcephaly-associated protein| homolog (Fragment) Length = 3452 Score = 27.3 bits (59), Expect = 9.0 Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 6/60 (10%) Frame = +1 Query: 76 IMLPKLFSLVEKSWNLSKDI-MRDIKFLEKELGM-----IVRSIDMELNTPRQDHGAALL 237 + L ++ L+ + WNLSK + M I L+K + I+RS ++LN +HG A+L Sbjct: 969 VRLVRIMELLTRDWNLSKKLRMPAISRLQKMHNVDIVLQILRSQGIQLN---DEHGNAIL 1025
>ATPA_KLULA (P49375) ATP synthase alpha chain, mitochondrial precursor (EC| 3.6.3.14) Length = 548 Score = 27.3 bits (59), Expect = 9.0 Identities = 13/30 (43%), Positives = 16/30 (53%) Frame = -2 Query: 324 LLPARAVHEAVDAVLYPVSQLAQISHGQEQ 235 +LP R+VHE V L V L I GQ + Sbjct: 176 ILPRRSVHEPVQTGLKSVDALVPIGRGQRE 205
>LONH1_METTH (O26878) Putative protease La homolog type 1 (EC 3.4.21.-)| Length = 644 Score = 27.3 bits (59), Expect = 9.0 Identities = 17/67 (25%), Positives = 35/67 (52%) Frame = -2 Query: 396 LLGELQPGEERLGGLHAPAEQRRLLLPARAVHEAVDAVLYPVSQLAQISHGQEQQGCSVV 217 LLG+++ + GGL PA +R + A +H+A VLY + ++ + +Q+ + + Sbjct: 208 LLGDVRHDPYQSGGLGTPAHER---VEAGMIHKANKGVLY-IDEIGTMKMKTQQELLTAM 263 Query: 216 LSRRVEL 196 +R + Sbjct: 264 QEKRYSI 270
>ATPA_YEAST (P07251) ATP synthase alpha chain, mitochondrial precursor (EC| 3.6.3.14) Length = 545 Score = 27.3 bits (59), Expect = 9.0 Identities = 13/30 (43%), Positives = 16/30 (53%) Frame = -2 Query: 324 LLPARAVHEAVDAVLYPVSQLAQISHGQEQ 235 +LP R+VHE V L V L I GQ + Sbjct: 173 ILPRRSVHEPVQTGLKAVDALVPIGRGQRE 202 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 43,508,776 Number of Sequences: 219361 Number of extensions: 768358 Number of successful extensions: 3180 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 3106 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3174 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 1370455656 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
