>COPB_DROME (P45437) Coatomer subunit beta (Beta-coat protein) (Beta-COP)|
          Length = 964

 Score = 41.2 bits (95), Expect = 7e-04
 Identities = 19/53 (35%), Positives = 28/53 (52%)
 Frame = +1

Query: 73  PCTLLVHFDKGSAAMANEIKADLEGSDVAAKVEAMKRAVMLLLNGETLPTLFI 231
           PC  +++          ++K DLE  D   K+E +KR + LLLNGE  P L +
Sbjct: 6   PCYTIINSPDLEVTNEMQLKRDLEKGDTNVKIETLKRVIKLLLNGERYPGLIM 58

>COPB_RAT (P23514) Coatomer subunit beta (Beta-coat protein) (Beta-COP)|
          Length = 953

 Score = 41.2 bits (95), Expect = 7e-04
 Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
 Frame = +1

Query: 61  AMDKPCTLLVHFDKGSAAMAN-EIKADLEGSDVAAKVEAMKRAVMLLLNGETLPTLFI 231
           A +  C  L++    S   +   +K DLE  DV +K EA+K+ ++++LNGE LP L +
Sbjct: 3   AAENVCYTLINVPMDSEPPSEISLKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLM 60

>COPB_MOUSE (Q9JIF7) Coatomer subunit beta (Beta-coat protein) (Beta-COP)|
          Length = 953

 Score = 41.2 bits (95), Expect = 7e-04
 Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
 Frame = +1

Query: 61  AMDKPCTLLVHFDKGSAAMAN-EIKADLEGSDVAAKVEAMKRAVMLLLNGETLPTLFI 231
           A +  C  L++    S   +   +K DLE  DV +K EA+K+ ++++LNGE LP L +
Sbjct: 3   AAENVCYTLINVPMDSEPPSEISLKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLM 60

>COPB_HUMAN (P53618) Coatomer subunit beta (Beta-coat protein) (Beta-COP)|
          Length = 953

 Score = 41.2 bits (95), Expect = 7e-04
 Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
 Frame = +1

Query: 61  AMDKPCTLLVHFDKGSAAMAN-EIKADLEGSDVAAKVEAMKRAVMLLLNGETLPTLFI 231
           A +  C  L++    S   +   +K DLE  DV +K EA+K+ ++++LNGE LP L +
Sbjct: 3   AAENVCYTLINVPMDSEPPSEISLKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLM 60

>COPB_SCHPO (Q9UUF7) Coatomer subunit beta (Beta-coat protein) (Beta-COP)|
          Length = 940

 Score = 34.7 bits (78), Expect = 0.068
 Identities = 16/52 (30%), Positives = 29/52 (55%)
 Frame = +1

Query: 76  CTLLVHFDKGSAAMANEIKADLEGSDVAAKVEAMKRAVMLLLNGETLPTLFI 231
           C  LV  D   A   + +K  LE  +   K+ AMK  + +++NG++LP++ +
Sbjct: 3   CWTLVQQDFLEAPSVDALKTSLESKNDYVKISAMKTILRVVINGDSLPSILM 54

>NU2C_PROMM (Q7V626) NAD(P)H-quinone oxidoreductase chain 2 (EC 1.6.5.-)|
           (NAD(P)H dehydrogenase I, chain 2) (NDH-1, chain 2)
          Length = 523

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -1

Query: 164 LAATSLPSRSALISFAMAAEPLSKWTSSVHGLSMAP 57
           LAA SL    A ++F +AA P  +WT  V+  S  P
Sbjct: 222 LAALSLVFVLATVAFKIAAVPFHQWTPDVYEGSPTP 257

>VGLL_HCMV6 (Q68672) Glycoprotein L precursor|
          Length = 278

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
 Frame = +1

Query: 10  RYPTRRRPLARVHGRSGAMDKPCTLLVHFDKGSAAMANEIKADLEGSDVAAKV---EAMK 180
           +Y +  RPL  V GR+G    P + L+ +   +   AN +  D    D  A +       
Sbjct: 64  KYESWLRPLVNVTGRNG----PLSQLIRYRPVTPEAANSVLLDDAFLDTLALLYNNPDQL 119

Query: 181 RAVMLLLNGETLP 219
           RA++ LL+ +T P
Sbjct: 120 RALLTLLSSDTAP 132


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,133,959
Number of Sequences: 219361
Number of extensions: 378987
Number of successful extensions: 1349
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1349
length of database: 80,573,946
effective HSP length: 53
effective length of database: 68,947,813
effective search space used: 1654747512
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)