ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl18a04 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_462832.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 3111 Score = 252 bits (127), Expect = 4e-64 Identities = 169/183 (92%) Strand = Plus / Plus Query: 51 cagatccggcgccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgc 110 |||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||| Sbjct: 246 cagatccggcgccatggagaagccgagcacgctgctggtccacttcgacaagggctccgc 305 Query: 111 cgccatggcgaatgagatcaaggcggatctggagggcagcgacgtcgccgccaaggtcga 170 ||||||||| |||||||||||||||||| |||||||||||||| ||||||||||| || Sbjct: 306 cgccatggccggtgagatcaaggcggatctcgagggcagcgacgtggccgccaaggtgga 365 Query: 171 ggccatgaagcgcgccgtcatgctcctcctcaatggcgagaccctgccgacgctcttcat 230 |||||||||||||||||||||||||||||||| ||||||||||| || || |||||||| Sbjct: 366 cgccatgaagcgcgccgtcatgctcctcctcaacggcgagaccctccccaccctcttcat 425 Query: 231 cac 233 ||| Sbjct: 426 cac 428
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 252 bits (127), Expect = 4e-64 Identities = 169/183 (92%) Strand = Plus / Minus Query: 51 cagatccggcgccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgc 110 |||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||| Sbjct: 10025978 cagatccggcgccatggagaagccgagcacgctgctggtccacttcgacaagggctccgc 10025919 Query: 111 cgccatggcgaatgagatcaaggcggatctggagggcagcgacgtcgccgccaaggtcga 170 ||||||||| |||||||||||||||||| |||||||||||||| ||||||||||| || Sbjct: 10025918 cgccatggccggtgagatcaaggcggatctcgagggcagcgacgtggccgccaaggtgga 10025859 Query: 171 ggccatgaagcgcgccgtcatgctcctcctcaatggcgagaccctgccgacgctcttcat 230 |||||||||||||||||||||||||||||||| ||||||||||| || || |||||||| Sbjct: 10025858 cgccatgaagcgcgccgtcatgctcctcctcaacggcgagaccctccccaccctcttcat 10025799 Query: 231 cac 233 ||| Sbjct: 10025798 cac 10025796
>dbj|AP003103.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1085F09 Length = 132713 Score = 252 bits (127), Expect = 4e-64 Identities = 169/183 (92%) Strand = Plus / Minus Query: 51 cagatccggcgccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgc 110 |||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||| Sbjct: 106260 cagatccggcgccatggagaagccgagcacgctgctggtccacttcgacaagggctccgc 106201 Query: 111 cgccatggcgaatgagatcaaggcggatctggagggcagcgacgtcgccgccaaggtcga 170 ||||||||| |||||||||||||||||| |||||||||||||| ||||||||||| || Sbjct: 106200 cgccatggccggtgagatcaaggcggatctcgagggcagcgacgtggccgccaaggtgga 106141 Query: 171 ggccatgaagcgcgccgtcatgctcctcctcaatggcgagaccctgccgacgctcttcat 230 |||||||||||||||||||||||||||||||| ||||||||||| || || |||||||| Sbjct: 106140 cgccatgaagcgcgccgtcatgctcctcctcaacggcgagaccctccccaccctcttcat 106081 Query: 231 cac 233 ||| Sbjct: 106080 cac 106078
>dbj|AP002862.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0036E02 Length = 145931 Score = 252 bits (127), Expect = 4e-64 Identities = 169/183 (92%) Strand = Plus / Minus Query: 51 cagatccggcgccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgc 110 |||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||| Sbjct: 120471 cagatccggcgccatggagaagccgagcacgctgctggtccacttcgacaagggctccgc 120412 Query: 111 cgccatggcgaatgagatcaaggcggatctggagggcagcgacgtcgccgccaaggtcga 170 ||||||||| |||||||||||||||||| |||||||||||||| ||||||||||| || Sbjct: 120411 cgccatggccggtgagatcaaggcggatctcgagggcagcgacgtggccgccaaggtgga 120352 Query: 171 ggccatgaagcgcgccgtcatgctcctcctcaatggcgagaccctgccgacgctcttcat 230 |||||||||||||||||||||||||||||||| ||||||||||| || || |||||||| Sbjct: 120351 cgccatgaagcgcgccgtcatgctcctcctcaacggcgagaccctccccaccctcttcat 120292 Query: 231 cac 233 ||| Sbjct: 120291 cac 120289
>gb|AC120539.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0063D09 map S1559, complete sequence Length = 190721 Score = 180 bits (91), Expect = 1e-42 Identities = 139/155 (89%) Strand = Plus / Minus Query: 61 gccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgccatggcg 120 |||||||| ||||| ||||| || || ||||||||||||||||||||| || ||||||| Sbjct: 21432 gccatggagaagccatgcaccctcctggtccacttcgacaagggctccccctccatggcc 21373 Query: 121 aatgagatcaaggcggatctggagggcagcgacgtcgccgccaaggtcgaggccatgaag 180 || ||||||||||| || || ||||||||||||||||||||||||||||| ||||||||| Sbjct: 21372 aacgagatcaaggccgacctcgagggcagcgacgtcgccgccaaggtcgacgccatgaag 21313 Query: 181 cgcgccgtcatgctcctcctcaatggcgagaccct 215 |||||| ||||||| |||||||| ||||||||||| Sbjct: 21312 cgcgccatcatgctgctcctcaacggcgagaccct 21278
>gb|AC123897.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0055G24 map S20116S, complete sequence Length = 174210 Score = 180 bits (91), Expect = 1e-42 Identities = 139/155 (89%) Strand = Plus / Minus Query: 61 gccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgccatggcg 120 |||||||| ||||| ||||| || || ||||||||||||||||||||| || ||||||| Sbjct: 170897 gccatggagaagccatgcaccctcctggtccacttcgacaagggctccccctccatggcc 170838 Query: 121 aatgagatcaaggcggatctggagggcagcgacgtcgccgccaaggtcgaggccatgaag 180 || ||||||||||| || || ||||||||||||||||||||||||||||| ||||||||| Sbjct: 170837 aacgagatcaaggccgacctcgagggcagcgacgtcgccgccaaggtcgacgccatgaag 170778 Query: 181 cgcgccgtcatgctcctcctcaatggcgagaccct 215 |||||| ||||||| |||||||| ||||||||||| Sbjct: 170777 cgcgccatcatgctgctcctcaacggcgagaccct 170743
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 180 bits (91), Expect = 1e-42 Identities = 139/155 (89%) Strand = Plus / Minus Query: 61 gccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgccatggcg 120 |||||||| ||||| ||||| || || ||||||||||||||||||||| || ||||||| Sbjct: 3653760 gccatggagaagccatgcaccctcctggtccacttcgacaagggctccccctccatggcc 3653701 Query: 121 aatgagatcaaggcggatctggagggcagcgacgtcgccgccaaggtcgaggccatgaag 180 || ||||||||||| || || ||||||||||||||||||||||||||||| ||||||||| Sbjct: 3653700 aacgagatcaaggccgacctcgagggcagcgacgtcgccgccaaggtcgacgccatgaag 3653641 Query: 181 cgcgccgtcatgctcctcctcaatggcgagaccct 215 |||||| ||||||| |||||||| ||||||||||| Sbjct: 3653640 cgcgccatcatgctgctcctcaacggcgagaccct 3653606
>dbj|AK120719.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002G07, full insert sequence Length = 3332 Score = 180 bits (91), Expect = 1e-42 Identities = 139/155 (89%) Strand = Plus / Plus Query: 61 gccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgccatggcg 120 |||||||| ||||| ||||| || || ||||||||||||||||||||| || ||||||| Sbjct: 111 gccatggagaagccatgcaccctcctggtccacttcgacaagggctccccctccatggcc 170 Query: 121 aatgagatcaaggcggatctggagggcagcgacgtcgccgccaaggtcgaggccatgaag 180 || ||||||||||| || || ||||||||||||||||||||||||||||| ||||||||| Sbjct: 171 aacgagatcaaggccgacctcgagggcagcgacgtcgccgccaaggtcgacgccatgaag 230 Query: 181 cgcgccgtcatgctcctcctcaatggcgagaccct 215 |||||| ||||||| |||||||| ||||||||||| Sbjct: 231 cgcgccatcatgctgctcctcaacggcgagaccct 265
>dbj|AK120713.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002A09, full insert sequence Length = 3332 Score = 180 bits (91), Expect = 1e-42 Identities = 139/155 (89%) Strand = Plus / Plus Query: 61 gccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgccatggcg 120 |||||||| ||||| ||||| || || ||||||||||||||||||||| || ||||||| Sbjct: 111 gccatggagaagccatgcaccctcctggtccacttcgacaagggctccccctccatggcc 170 Query: 121 aatgagatcaaggcggatctggagggcagcgacgtcgccgccaaggtcgaggccatgaag 180 || ||||||||||| || || ||||||||||||||||||||||||||||| ||||||||| Sbjct: 171 aacgagatcaaggccgacctcgagggcagcgacgtcgccgccaaggtcgacgccatgaag 230 Query: 181 cgcgccgtcatgctcctcctcaatggcgagaccct 215 |||||| ||||||| |||||||| ||||||||||| Sbjct: 231 cgcgccatcatgctgctcctcaacggcgagaccct 265
>dbj|AK072825.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023136B14, full insert sequence Length = 1667 Score = 180 bits (91), Expect = 1e-42 Identities = 139/155 (89%) Strand = Plus / Plus Query: 61 gccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgccatggcg 120 |||||||| ||||| ||||| || || ||||||||||||||||||||| || ||||||| Sbjct: 75 gccatggagaagccatgcaccctcctggtccacttcgacaagggctccccctccatggcc 134 Query: 121 aatgagatcaaggcggatctggagggcagcgacgtcgccgccaaggtcgaggccatgaag 180 || ||||||||||| || || ||||||||||||||||||||||||||||| ||||||||| Sbjct: 135 aacgagatcaaggccgacctcgagggcagcgacgtcgccgccaaggtcgacgccatgaag 194 Query: 181 cgcgccgtcatgctcctcctcaatggcgagaccct 215 |||||| ||||||| |||||||| ||||||||||| Sbjct: 195 cgcgccatcatgctgctcctcaacggcgagaccct 229
>dbj|AK069716.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030F21, full insert sequence Length = 3363 Score = 180 bits (91), Expect = 1e-42 Identities = 139/155 (89%) Strand = Plus / Plus Query: 61 gccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgccatggcg 120 |||||||| ||||| ||||| || || ||||||||||||||||||||| || ||||||| Sbjct: 142 gccatggagaagccatgcaccctcctggtccacttcgacaagggctccccctccatggcc 201 Query: 121 aatgagatcaaggcggatctggagggcagcgacgtcgccgccaaggtcgaggccatgaag 180 || ||||||||||| || || ||||||||||||||||||||||||||||| ||||||||| Sbjct: 202 aacgagatcaaggccgacctcgagggcagcgacgtcgccgccaaggtcgacgccatgaag 261 Query: 181 cgcgccgtcatgctcctcctcaatggcgagaccct 215 |||||| ||||||| |||||||| ||||||||||| Sbjct: 262 cgcgccatcatgctgctcctcaacggcgagaccct 296
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 180 bits (91), Expect = 1e-42 Identities = 139/155 (89%) Strand = Plus / Minus Query: 61 gccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgccatggcg 120 |||||||| ||||| ||||| || || ||||||||||||||||||||| || ||||||| Sbjct: 3662454 gccatggagaagccatgcaccctcctggtccacttcgacaagggctccccctccatggcc 3662395 Query: 121 aatgagatcaaggcggatctggagggcagcgacgtcgccgccaaggtcgaggccatgaag 180 || ||||||||||| || || ||||||||||||||||||||||||||||| ||||||||| Sbjct: 3662394 aacgagatcaaggccgacctcgagggcagcgacgtcgccgccaaggtcgacgccatgaag 3662335 Query: 181 cgcgccgtcatgctcctcctcaatggcgagaccct 215 |||||| ||||||| |||||||| ||||||||||| Sbjct: 3662334 cgcgccatcatgctgctcctcaacggcgagaccct 3662300
>ref|XM_956946.1| Neurospora crassa OR74A hypothetical protein (NCU08828.1) partial mRNA Length = 2685 Score = 44.1 bits (22), Expect = 0.19 Identities = 22/22 (100%) Strand = Plus / Plus Query: 95 tcgacaagggctccgccgccat 116 |||||||||||||||||||||| Sbjct: 2162 tcgacaagggctccgccgccat 2183
>ref|XM_330944.1| Neurospora crassa OR74A hypothetical protein (NCU08828.1) partial mRNA Length = 2685 Score = 44.1 bits (22), Expect = 0.19 Identities = 22/22 (100%) Strand = Plus / Plus Query: 95 tcgacaagggctccgccgccat 116 |||||||||||||||||||||| Sbjct: 2162 tcgacaagggctccgccgccat 2183
>emb|X80052.1|NCFOX2 N.crassa fox-2 gene Length = 3401 Score = 44.1 bits (22), Expect = 0.19 Identities = 22/22 (100%) Strand = Plus / Plus Query: 95 tcgacaagggctccgccgccat 116 |||||||||||||||||||||| Sbjct: 2665 tcgacaagggctccgccgccat 2686
>gb|AE005990.1| Caulobacter crescentus CB15 section 316 of 359 of the complete genome Length = 10324 Score = 42.1 bits (21), Expect = 0.76 Identities = 27/29 (93%) Strand = Plus / Minus Query: 134 cggatctggagggcagcgacgtcgccgcc 162 |||||||| ||||| |||||||||||||| Sbjct: 542 cggatctgcagggcggcgacgtcgccgcc 514 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 139 ctggagggcagcgacgtcgccgcc 162 ||||||||| |||||||||||||| Sbjct: 508 ctggagggcggcgacgtcgccgcc 531
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 42.1 bits (21), Expect = 0.76 Identities = 24/25 (96%) Strand = Plus / Plus Query: 195 cctcctcaatggcgagaccctgccg 219 |||||||||||||||||| |||||| Sbjct: 7448022 cctcctcaatggcgagactctgccg 7448046
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 42.1 bits (21), Expect = 0.76 Identities = 21/21 (100%) Strand = Plus / Plus Query: 155 tcgccgccaaggtcgaggcca 175 ||||||||||||||||||||| Sbjct: 4038174 tcgccgccaaggtcgaggcca 4038194
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 gccgccaaggtcgaggccat 176 |||||||||||||||||||| Sbjct: 2893165 gccgccaaggtcgaggccat 2893146
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 161 ccaaggtcgaggccatgaag 180 |||||||||||||||||||| Sbjct: 1720007 ccaaggtcgaggccatgaag 1720026 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 161 ccaaggtcgaggccatgaag 180 |||||||||||||||||||| Sbjct: 728522 ccaaggtcgaggccatgaag 728541
>dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003 Length = 4170692 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 197 tcctcaatggcgagaccctg 216 |||||||||||||||||||| Sbjct: 4156014 tcctcaatggcgagaccctg 4156033
>gb|CP000264.1| Jannaschia sp. CCS1, complete genome Length = 4317977 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 126 gatcaaggcggatctggagg 145 |||||||||||||||||||| Sbjct: 1763887 gatcaaggcggatctggagg 1763868
>ref|XM_396102.2| PREDICTED: Apis mellifera similar to GA21972-PA (LOC412647), partial mRNA Length = 1205 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 atccaccaccgataccccac 20 |||||||||||||||||||| Sbjct: 245 atccaccaccgataccccac 264
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 153 cgtcgccgccaaggtcgagg 172 |||||||||||||||||||| Sbjct: 4994308 cgtcgccgccaaggtcgagg 4994327
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 161 ccaaggtcgaggccatgaag 180 |||||||||||||||||||| Sbjct: 759001 ccaaggtcgaggccatgaag 759020
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 gcgacgtcgccgccaaggtc 168 |||||||||||||||||||| Sbjct: 1266036 gcgacgtcgccgccaaggtc 1266017 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,267,485 Number of Sequences: 3902068 Number of extensions: 1267485 Number of successful extensions: 24404 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 26 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 23892 Number of HSP's gapped (non-prelim): 512 length of query: 233 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 211 effective length of database: 17,147,199,772 effective search space: 3618059151892 effective search space used: 3618059151892 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
