ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl18a03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Y4837_ARATH (P58223) Probable nucleic acid binding protein At4g1... 29 5.9
2SET1_YEAST (P38827) Histone-lysine N-methyltransferase, H3 lysin... 28 7.7

>Y4837_ARATH (P58223) Probable nucleic acid binding protein At4g18375|
          Length = 606

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +3

Query: 300 KKRTRFNSDDGKRKRLNYRQDDGPMSSQPIETVYRILCPGNKIGGIL 440
           KKR +   ++ +  R   R+      ++    VYRILCP + +GG++
Sbjct: 5   KKRKQIQRNNSESNRNQKRRISHDKINRDELVVYRILCPIDVVGGVI 51



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>SET1_YEAST (P38827) Histone-lysine N-methyltransferase, H3 lysine-4 specific|
           (EC 2.1.1.43) (COMPASS component SET1) (SET domain
           protein 1)
          Length = 1080

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +3

Query: 270 NSRRHNPSTSKKRTRFNSDDGKRKRLNYRQDDGPMSSQPIET 395
           +S +   S   +R R+N +DG R+R N   DD P SS    T
Sbjct: 36  HSHQQYSSQYNQRRRYNHNDGTRRRYN---DDRPHSSNNAST 74


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,913,015
Number of Sequences: 219361
Number of extensions: 629665
Number of successful extensions: 1324
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1324
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2628831825
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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